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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr20 | genome | chr20:504717..508139 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO20G01660.1 vs.
Match: CBJ28300.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 124.8 bits (312), Expect = 6.800e-25 Identity = 56/69 (81.16%), Postives = 62/69 (89.86%), Query Frame = 0
Query: 24 SVDTGSQVCALLWSQHNKELVSSHGFSGNQLCLWKYPSMAKIKELKGHTARFLHLDQSPDGMTVVSAAA 93
SVDTGSQVC+L WS+HNKELVSSHGFS NQLCLWKYP+M KIKE +GHT+R LH+D SPDG TVVSAAA
Sbjct: 497 SVDTGSQVCSLQWSRHNKELVSSHGFSENQLCLWKYPNMLKIKEFRGHTSRVLHMDTSPDGSTVVSAAA 565
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO20G01660.1 ID=NO20G01660.1|Name=NO20G01660.1|organism=Nannochloropsis oceanica|type=mRNA|length=1527bp ATGGCTTCCTACATGTTATCTTTATCATATAGACGTCGTACAGTGGTGCG GAGAAGTTGTCAAACGCCCAGCGTGGACACTGGCAGTCAGGTCTGTGCCT TGCTCTGGTCCCAGCACAACAAGGAGCTCGTCTCCTCCCACGGCTTCTCG GGAAACCAACTCTGCCTTTGGAAGTACCCCTCCATGGCCAAGATCAAGGA GCTCAAAGGACACACGGCGCGATTCCTCCACCTCGATCAGTCCCCGGACG GGATGACAGTTGTCTCAGCAGCCGCGAGACCCTCCGGTTTTGGGAGATCA TGGGCCAGCCACAAGACAAGCAAAAGCAATTCGTGGGAAAAGGCATCTTG CCTCCTCCTCTCAACACCATCAGCATGGCTCGCTCCTCATCTGGGACATT TGGTGGAATCAGATAAAGGGGGAAGGAGGGAGGGGGGGGAGGAGGGGGGG AAGGAGGGGGGGAGGGCGAAAGAGCAAGGGGAGGGGAAGGAGGGGGAGGA CGAGGGGAAGGACGAGGGGAAAGAGGGGCAGGAGGAGGAGGAGGAGGAGG AGGAGGAGGAGGGTGGAGGAGGAGAAAGAGGGGGAGAAGGAGGAGGAGGA GGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGTAGGAAGAAG GTGGAAGAGGAAGAGGAATAAGAGGAAGAAGAAGACGAACAAGAAGGGGG AGGAGAGGGAGAAGAAGAACAGGAAGAAGAGGAAGAAGAAGACGAACAAT GAAGAAGAAGGAGGAGAGGAAGAAGAAGAGGAAGAAGAAGAAGAAAAGGA GGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAG AAGAAGAAAAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAA GGGGGTAGAGGAGGAGGGGGAGGAGGAGGGAGACGAGGAGGGGGTGGAAG GGGAAGGGGAGGAGGAGGAAAAGGCGGTGGAAGCAGAGGGGGAGGAGAAG CAGGAGGAGGAGGAGGAGAAGGGGGAGGAGGAGGAAGGGAAAGGGGAGGA GGGGGCGGAGGCGGTGGAAGCAGAGGAGGAGGAGGAGGGGAAGGAGGAGG CGGAGGAGGAGGAGGAGGACGAGGCAGAGGAGGACGAGGCAGAGGAGGAG GAGGAGGTCATGGGCGGGCCATCCGAGGACTGTATTGGTGTGACACCTGT GAACAGCTCGTGTCCTGGGACGGCAATGGGGCACGTAACATCCTACGGGT GTACAGGAGTATGGTCCGTGGAGAAGCTCGTCCCCATGATCTTCGGTTTG GTCAACCGCGGCAAGATATGCGGACACTCTATGTGTAGCCTTCCCTCTGA CCTCCTTTTTAGTCCTCCTCCCCCTTCTCCTCCTGGCCCTGTGTGGGCCG TCCGGGGACTTTGCCTGATCAAAAAATCTGTCAAAGTCGCTAGTAAAACT CGGACAATAATAAGGGATGAATATGCAACAAATTCTTGTGGCCCGATTGG GAGCCAAGAATGGAAAAAACAAACAAA back to topprotein sequence of NO20G01660.1 >NO20G01660.1-protein ID=NO20G01660.1-protein|Name=NO20G01660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=446bp MASYMLSLSYRRRTVVRRSCQTPSVDTGSQVCALLWSQHNKELVSSHGFS GNQLCLWKYPSMAKIKELKGHTARFLHLDQSPDGMTVVSAAARPSGFGRS WASHKTSKSNSWEKASCLLLSTPSAWLAPHLGHLVESDKGGRREGGEEGG KEGGRAKEQGEGKEGEDEGKDEGKEGQEEEEEEEEEEGGGGERGGEGGGG GGEGGGGGGGEGGVGRRWKRKRNKRKKKTNKKGEEREKKNRKKRKKKTNN EEEGGEEEEEEEEEEKEEEEEEEEEEEEEEEEEEEEKEEEEEEEEEEEEE GGRGGGGGGGRRGGGGRGRGGGGKGGGSRGGGEAGGGGGEGGGGGRERGG GGGGGGSRGGGGGEGGGGGGGGGRGRGGRGRGGGGGHGRAIRGLYWCDTC EQLVSWDGNGARNILRVYRSMVRGEARPHDLRFGQPRQDMRTLYV* back to topmRNA from alignment at chr20:504717..508139- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO20G01660.1 ID=NO20G01660.1|Name=NO20G01660.1|organism=Nannochloropsis oceanica|type=mRNA|length=3423bp|location=Sequence derived from alignment at chr20:504717..508139- (Nannochloropsis oceanica) ATGGCTTCCTACATGTTATCTTTATCATATAGACGTCGTACAGTGGTGCG
GAGAAGTTGTCAAACGCCCAGGTAGCACAAGCATAGGAAAGCCTCAGTCG
CCTCCTCGCCTCGGGGGGAGGGACTCTCGATCGTACCATCAAGTTTTGGA
ACACCCACACAGGCTCCCTCCTCAACAGCGTGGACACTGGCAGTCAGGTA
GGCAAGCCCTCCCTCCCTCCCTCCCTTTCTCCCTCCCTTCCATCTTTCCT
TGCTTCCTCCTCTCTCTGGCCAGCATGATCCGCACACAAATCGGTCTGTG
AAAGTAGTCGTCTATTTATTGCCCTCAATCTAATCCTTATGTCATTATCA
CCACACAATGAATGATGAGTCTACTTCCACGCAATACCAATCTTATTACA
TTACACGCGGTACCAATCTAATAACATTACATAAAATTACACGCGGTGCC
AATCTAATCACATTACCCTTAATTTCGCGACAGGTCTGTGCCTTGCTCTG
GTCCCAGCACAACAAGGAGCTCGTCTCCTCCCACGGCTTCTCGGGAAACC
AACTCTGGTATGTCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
TCTCATGTTAAACCCTTTTTAATGCCCCTACACGATGATGTTTGCTTTTT
TTGATCCTCCCTCCCTCCCTCCCTCCATCCCTCCCTCCTTCCCTCGCTCC
CTCAGCCTTTGGAAGTACCCCTCCATGGCCAAGATCAAGGAGCTCAAAGG
ACACACGGCGCGATTCCTCCACCTCGATCAGGTACAGAGCGCCCTCCTTC
CCTCCCTACCTCGCTCTCTATATCCCTCCCTCTTGTCCTCCCTGCTTCTC
CCCTTTTGTATGTCGCACAGGCACTGGCGAGTCCTCGTACCGTCAACCTC
CCCTCCCTCCCCTCCCTCCCTTCCCTCCTCGACCTACTGCAGTCCAACAC
ACTTCTGCCCATACTCACTGACTAACCCTCCTCTCTCTCCCTCCATCCCT
CAGTCCCCGGACGGGATGACAGTTGTCTCAGCAGCCGCGAGACCCTCCGG
TTTTGGGAGATCATGGGCCAGCCACAAGGTAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAAGAAAAGCCAGGAGGGTGTTGGGCTTGCCATAT
CCGCTCACTCCACTTTTTCATGTCGCTATTTATCATTCATGTATTTATCG
ATCTCTCCTTTCCACCATCTTTTCCTCAGACAAGCAAAAGCAATTCGTGG
GAAAAGGCATCTTGCCTCCTCCTCTCAACACCATCAGCATGGCTCGCTCC
TCATCTGGGACATTTGGTGGAATCAGATAAAGGGGGAAGGAGGGAGGGGG
GGGAGGAGGGGGGGAAGGAGGGGGGGAGGGCGAAAGAGCAAGTATGCAAT
TATCTCTGGAAGCGTATGTGTGTGAGAGTGTCTGTGTTACTTTGTATAGG
GTAGAAGGAAGGTTCTCTGATCTTGCTAGCAGCAGCAGCTGCTGCTGCAG
TATAAGTAGTGCTGCGACAAACATCTCTGGCAGCAGTACCATGACAGCAG
AGAGAGCTGCAGCGGTAAGAGTGAGAGAAGCAGAAATAGTCATGGGCATT
CCAAATGAAATATGGGAATCGGGAAAGGCAGGTCAAGTGTTCCCGGACTG
ATAAGTGGTACGAGAAAAACAAGGCGTGTATATGTATTGTCTCACGGGGA
AGATGGAAGTCGAGGAAGTTTAGGCAATCCTCTTGTCTTTAGATCGAGTT
GGACCACGGATGGACATGGCTTTGGATGGACCGAGATATCATATATTTTG
TATATATATGCTTGTATAATATATACCAACTATGTATATGTTTTGTTTGA
TCGACATTTAGGAGCGTGTACATGACCATCGGCATGTAGCGGCAAAGATT
GCGGATCGGTGGGGAGAGGACTATCATCAAGTAGAGATCGAACTCAATCG
TGCAGAACTACCCTCCACCTTCCTGTTTCCCTGGGCATGGGTATGGTAAG
AAGACAGGTTCATCATGATAGGGAAGGGATATGTGGGAGCCAGTGCAACA
TCAGCACCAGCATCAACACCGGCAGTTGGAGGATGGGAAGGAGGAGGGGG
AGGAAGACGAGGGAAAAGAACCCGGGCTACGGAAGCAGCAGCAGCCGCCG
GCACACAGCTGACCATACGGGTGGCAGTCGCAGAAGCACGAGCCCAGGCA
GCTACAGGAGGAGGAGGAGGAGGGGGAACGAGAGGAATCCCGACTTTACT
CTCTTTACCCGGAGAAAAGGCAACACGAGCACGTGCAACCATTGCCAGAA
TCCGTGCGGCACTTGCAAGAGGGGGAGAAGGGAAAGAGAAAGATAGTGAG
GGCGCTCCCACGAGGAGGAAGAGGGGGAGGGGAAGGAGGGGGAGGACGAG
GGGAAGGACGAGGGGAAAGAGGGGCAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGGTGGAGGAGGAGAAAGAGGGGGAGAAGGAGGAGGAGGAGGAG
GAGAAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGTAGGAAGAAGGTGG
AAGAGGAAGAGGAATAAGAGGAAGAAGAAGACGAACAAGAAGGGGGAGGA
GAGGGAGAAGAAGAACAGGAAGAAGAGGAAGAAGAAGACGAACAATGAAG
AAGAAGGAGGAGAGGAAGAAGAAGAGGAAGAAGAAGAAGAAAAGGAGGAG
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAGA
AGAAAAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAGGGG
GTAGAGGAGGAGGGGGAGGAGGAGGGAGACGAGGAGGGGGTGGAAGGGGA
AGGGGAGGAGGAGGAAAAGGCGGTGGAAGCAGAGGGGGAGGAGAAGCAGG
AGGAGGAGGAGGAGAAGGGGGAGGAGGAGGAAGGGAAAGGGGAGGAGGGG
GCGGAGGCGGTGGAAGCAGAGGAGGAGGAGGAGGGGAAGGAGGAGGCGGA
GGAGGAGGAGGAGGACGAGGCAGAGGAGGACGAGGCAGAGGAGGAGGAGG
AGGTCATGGGCGGGCCATCCGAGGACTGTATTGGTGTGACACCTGTGAAC
AGCTCGTGTCCTGGGACGGCAATGGGGCACGTAACATCCTACGGGTGTAC
AGGAGTATGGTCCGTGGAGAAGCTCGTCCCCATGATCTTCGGTTTGGTCA
ACCGCGGCAAGATATGCGGACACTCTATGTGTAGCCTTCCCTCTGACCTC
CTTTTTAGTCCTCCTCCCCCTTCTCCTCCTGGCCCTGTGTGGGCCGTCCG
GGGACTTTGCCTGATCAAAAAATCTGTCAAAGTCGCTAGTAAAACTCGGA
CAATAATAAGGGATGAATATGCAACAAATTCTTGTGGCCCGATTGGGAGC
CAAGAATGGAAAAAACAAACAAA back to topCoding sequence (CDS) from alignment at chr20:504717..508139- >NO20G01660.1 ID=NO20G01660.1|Name=NO20G01660.1|organism=Nannochloropsis oceanica|type=CDS|length=1338bp|location=Sequence derived from alignment at chr20:504717..508139- (Nannochloropsis oceanica) ATGGCTTCCTACATGTTATCTTTATCATATAGACGTCGTACAGTGGTGCG GAGAAGTTGTCAAACGCCCAGCGTGGACACTGGCAGTCAGGTCTGTGCCT TGCTCTGGTCCCAGCACAACAAGGAGCTCGTCTCCTCCCACGGCTTCTCG GGAAACCAACTCTGCCTTTGGAAGTACCCCTCCATGGCCAAGATCAAGGA GCTCAAAGGACACACGGCGCGATTCCTCCACCTCGATCAGTCCCCGGACG GGATGACAGTTGTCTCAGCAGCCGCGAGACCCTCCGGTTTTGGGAGATCA TGGGCCAGCCACAAGACAAGCAAAAGCAATTCGTGGGAAAAGGCATCTTG CCTCCTCCTCTCAACACCATCAGCATGGCTCGCTCCTCATCTGGGACATT TGGTGGAATCAGATAAAGGGGGAAGGAGGGAGGGGGGGGAGGAGGGGGGG AAGGAGGGGGGGAGGGCGAAAGAGCAAGGGGAGGGGAAGGAGGGGGAGGA CGAGGGGAAGGACGAGGGGAAAGAGGGGCAGGAGGAGGAGGAGGAGGAGG AGGAGGAGGAGGGTGGAGGAGGAGAAAGAGGGGGAGAAGGAGGAGGAGGA GGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGTAGGAAGAAG GTGGAAGAGGAAGAGGAATAAGAGGAAGAAGAAGACGAACAAGAAGGGGG AGGAGAGGGAGAAGAAGAACAGGAAGAAGAGGAAGAAGAAGACGAACAAT GAAGAAGAAGGAGGAGAGGAAGAAGAAGAGGAAGAAGAAGAAGAAAAGGA GGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAG AAGAAGAAAAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAA GGGGGTAGAGGAGGAGGGGGAGGAGGAGGGAGACGAGGAGGGGGTGGAAG GGGAAGGGGAGGAGGAGGAAAAGGCGGTGGAAGCAGAGGGGGAGGAGAAG CAGGAGGAGGAGGAGGAGAAGGGGGAGGAGGAGGAAGGGAAAGGGGAGGA GGGGGCGGAGGCGGTGGAAGCAGAGGAGGAGGAGGAGGGGAAGGAGGAGG CGGAGGAGGAGGAGGAGGACGAGGCAGAGGAGGACGAGGCAGAGGAGGAG GAGGAGGTCATGGGCGGGCCATCCGAGGACTGTATTGGTGTGACACCTGT GAACAGCTCGTGTCCTGGGACGGCAATGGGGCACGTAACATCCTACGGGT GTACAGGAGTATGGTCCGTGGAGAAGCTCGTCCCCATGATCTTCGGTTTG GTCAACCGCGGCAAGATATGCGGACACTCTATGTGTAG back to top
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