NO20G01140.1, NO20G01140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G01140.1
Unique NameNO20G01140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1905
Alignment locationchr20:355403..357522 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:355403..357522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO20G01140.1 vs.
Match: OQR88826.1 (hypothetical protein THRCLA_10075, partial [Thraustotheca clavata])

HSP 1 Score: 91.3 bits (225), Expect = 1.100e-14
Identity = 61/212 (28.77%), Postives = 106/212 (50.00%), Query Frame = 0 
Query:   79 VSELLSIMRLLILCCQDTESAVGVGLFGLHPWIKRVLASDNEEEGQEDDEATEVLREYAEEI----ASRCARVRGGFPLQRLALCSDSAFSSLHLPVRVPIYSHFRTTTITHAQNHQPGKENESKDLIVLISPIAYRMSSQADTGYFLWPAATILTRFILINSSFFAGKRVMEIGAGLGLCGLVAGRVAKEVLLTDHNLACVRQMQEHVRLN 287
            ++ +  I+ ++    +D ++ V     G+H  + R+L  +NE           +++E A  I    +S+ A   G           +++F    LP+  P     R   +  A  H   +++E+ + +VLI  +  RM+ Q  TGY LW AA IL R+I +N   F G+ V+E+G+GLGLCG+VA   + ++ LTD+    +  +Q +V LN
Sbjct:   25 INNVYKILLMVAAVIEDEDNCVHAAQLGMHLVVMRLLMHENE-----------LIQEGASAIVVNSSSKNANTSG----------INTSFPYKTLPLEPPT----REWPLLQALPHDV-RDDENDEQVVLIRAVKTRMTGQPKTGYLLWGAAVILARWIHLNRQLFHGQTVLEVGSGLGLCGIVAAAYSDQITLTDYQQDTLDALQYNVNLN 210
The following BLAST results are available for this feature:
BLAST of NO20G01140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OQR88826.11.100e-1428.77hypothetical protein THRCLA_10075, partial [Thraus... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G01140NO20G01140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G01140.1NO20G01140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G01140.1.cds1NO20G01140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01140.1.cds2NO20G01140.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G01140.1 ID=NO20G01140.1|Name=NO20G01140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1905bp
GCACAGGGCTAGCCAGCGGAAATGGGACAAGGCATCTAAATTGCGCTCCA
AAACCTCCCCACCCCACGATGCTCCGCACGACCTTGGCCCGGGAAGAAGT
GGCAGTCCGCAACGCCGTGGATAAGCTCTTGAGTCGGCAGCTGCAACAAC
AGGAGGATGGTCAATTCATGAGCTACGACAAAGAACAGACGCTCCAAGCT
CTATTGCGAACGCCGCGCCGTCGCTTTCTCTTCTTGGAAGCCGGTGGCGT
GAAAGCATTGGTCGAGCTACTGAAAACACACGGTTTCGACCGTCCTATAC
CTGTATCTGAGCTCCTGAGCATTATGCGTTTACTTATCCTATGCTGTCAG
GACACGGAGAGTGCCGTGGGAGTAGGGCTGTTCGGCCTACATCCGTGGAT
AAAACGGGTGCTGGCCTCGGACAATGAAGAGGAAGGCCAGGAGGATGACG
AGGCAACGGAGGTCCTGCGAGAATATGCTGAGGAGATCGCCAGCCGCTGC
GCTCGCGTTCGTGGGGGTTTCCCCCTTCAAAGATTGGCATTATGCTCAGA
TTCGGCATTCTCGTCGTTACATTTGCCCGTACGTGTGCCTATTTATTCTC
ACTTTCGCACCACCACCATCACCCACGCTCAAAACCATCAGCCAGGGAAA
GAAAATGAAAGCAAGGATCTCATCGTTCTGATTTCACCCATCGCCTATCG
TATGAGCAGTCAAGCGGATACTGGTTATTTTCTATGGCCGGCTGCTACTA
TTCTCACTCGATTCATTTTGATAAATTCTTCTTTTTTTGCTGGGAAGAGG
GTGATGGAGATCGGAGCAGGGTTGGGGTTGTGTGGTTTAGTTGCAGGGAG
GGTTGCCAAAGAGGTGTTGCTGACTGATCATAATTTAGCATGTGTGCGGC
AAATGCAGGAGCATGTGAGATTGAATCGTGATGATGGGATAGGGGGATGG
GAGGAAGATCGAGTGACATCGAATGAAGGAGAGGCAGCGGCAGAGGCAGG
ATCAGCGGGAGCAACTTTAGGAGCAACAGTAGCGCTTGTGCATCCAAGCA
CAATGAAAGTGCGGTGGTTAGATTGGGATCGGCTGGAGGCCGTGTCGAAA
TTCACGTGGCAAGTGTCGGAGAAGGCAGAAGAGAAGGGGATACGAGGGGG
GCGGGAAGAGGAGGAAGGAGCAAAGAGCGAGGTGGACGAAGAGTATGATA
GAAAGGAGAATGCTGATTATCACTGTGTTTCAGAGGAGGAGATCGAAAGC
TTTGGCCGGCCGCGATGGAGCAGTGGCTTGCTCGATGTGGTGATAGGGAG
TGACTGTATTTGCGACGAGCCTAGCGCGGTGGGAGTGGCCCGCCTCCTTA
GCTTGACCTTGAAGCCGGGCACTGGAGTGGGGTATATCACTGCTCCTGCC
CCCCAGCATAGGTATGGCGTCCACGCTCTTCCGCGAGAGCTGGAGGCATG
CGGGCTGAGCTTTGAACAGGAGGAGGTTACTGACGAGGAGCTGTTGGAAG
ACCTTCAGGAGGCGGCATACATGCGCTTTCACCTCTTCACGGTGCGGAGG
ATGAAGGAGGAGGGGCAGCAAGGAAGAGAGGCAGCAGTAGCAGTAGTAGT
AGCAGCTGCAGCTACAGCAACAGCAGCAGTAGCGGCAACAGCAGCAGCAG
CAGCAGCAACAACAACAACAGCAGCAACAGCAACAGCAGCAACAGCAGCA
GGAGTAGTAGCAGCAGCAGCAGCACTAGCAGCAGCCACAACAGCAGCAAC
AGCAACAGCAGTAGCAGTAGCAGGAGGAGTTATGGGAGCAGCACCAACAG
CAGTAACAGGAGGAGCTGTCGATGCATGCGCACTGCCCAGCATAGGTTCA
ATAGACGTGACAGAGGAAATGTAAATGTACGAAAGCCAGGTACACATACC
CACAC
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protein sequence of NO20G01140.1

>NO20G01140.1-protein ID=NO20G01140.1-protein|Name=NO20G01140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=602bp
MLRTTLAREEVAVRNAVDKLLSRQLQQQEDGQFMSYDKEQTLQALLRTPR
RRFLFLEAGGVKALVELLKTHGFDRPIPVSELLSIMRLLILCCQDTESAV
GVGLFGLHPWIKRVLASDNEEEGQEDDEATEVLREYAEEIASRCARVRGG
FPLQRLALCSDSAFSSLHLPVRVPIYSHFRTTTITHAQNHQPGKENESKD
LIVLISPIAYRMSSQADTGYFLWPAATILTRFILINSSFFAGKRVMEIGA
GLGLCGLVAGRVAKEVLLTDHNLACVRQMQEHVRLNRDDGIGGWEEDRVT
SNEGEAAAEAGSAGATLGATVALVHPSTMKVRWLDWDRLEAVSKFTWQVS
EKAEEKGIRGGREEEEGAKSEVDEEYDRKENADYHCVSEEEIESFGRPRW
SSGLLDVVIGSDCICDEPSAVGVARLLSLTLKPGTGVGYITAPAPQHRYG
VHALPRELEACGLSFEQEEVTDEELLEDLQEAAYMRFHLFTVRRMKEEGQ
QGREAAVAVVVAAAATATAAVAATAAAAAATTTTAATATAATAAGVVAAA
AALAAATTAATATAVAVAGGVMGAAPTAVTGGAVDACALPSIGSIDVTEE
M*
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mRNA from alignment at chr20:355403..357522-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G01140.1 ID=NO20G01140.1|Name=NO20G01140.1|organism=Nannochloropsis oceanica|type=mRNA|length=2120bp|location=Sequence derived from alignment at chr20:355403..357522- (Nannochloropsis oceanica)
GCACAGGGCTAGCCAGCGGAAATGGGACAAGGCATCTAAATTGCGCTCCA
AAACCTCCCCACCCCACGATGCTCCGCACGACCTTGGCCCGGGAAGAAGT
GGCAGTCCGCAACGCCGTGGATAAGCTCTTGAGTCGGCAGCTGCAACAAC
AGGAGGATGGTCAATTCATGAGCTACGACAAAGAACAGACGCTCCAAGCT
CTATTGCGAACGCCGCGCCGTCGCTTTCTCTTCTTGGAAGCCGGTGGCGT
GAAAGCATTGGTCGAGCTACTGAAAACACACGGTTTCGACCGTCCTATAC
CTGTATCTGAGCTCCTGAGCATTATGCGTTTACTTATCCTATGCTGTCAG
GACACGGAGAGTGCCGTGGGAGTAGGGCTGTTCGGCCTACATCCGTGGAT
AAAACGGGTGCTGGCCTCGGACAATGAAGAGGAAGGCCAGGAGGATGACG
AGGCAACGGAGGTCCTGCGAGAATATGCTGAGGAGATCGCCAGCCGCTGC
GCTCGCGTTCGTGGGGGTTTCCCCCTTCAAAGATTGGCATTATGCTCAGA
TTCGGCATTCTCGTCGTTACATTTGCCCGTACGTGTGCCTATTTATTCTC
ACTTTCGCACCACCACCATCACCCACGCTCAAAACCATCAGCCAGGGAAA
GAAAATGAAAGCAAGGATCTCATCGTTCTGATTTCACCCATCGCCTATCG
TATGAGCAGTCAAGCGGATACTGGTTATTTTCTATGGCCGGCTGCTACTA
TTCTCACTCGATTCATTTTGATAAATTCTTCTTTTTTTGCTGGGAAGAGG
GTGATGGAGATCGGAGCAGGGTTGGGGTTGTGTGGTTTAGTTGCAGGGAG
GGTTGCCAAAGAGGTGTTGCTGACTGATCATAATTTAGCATGTGTGCGGC
AAATGCAGGAGCATGTGAGATTGAATCGTGATGATGGGATAGGGGGATGG
GAGGAAGATCGAGTGACATCGAATGAAGGAGAGGCAGCGGCAGAGGCAGG
ATCAGCGGGAGCAACTTTAGGAGCAACAGTAGCGCTTGTGCATCCAAGCA
CAATGAAAGTGCGGTGGTTAGATTGGGATCGGCTGGAGGCCGTGTCGAAA
TTCACGTGGCAAGTGTCGGAGAAGGCAGAAGAGAAGGGGATACGAGGGGG
GCGGGAAGAGGAGGAAGGAGCAAAGAGCGAGGTGGACGAAGAGTATGATA
GAAAGGAGAATGCTGATTATCACTGTGTTTCAGAGGAGGAGATCGAAAGC
TTTGGCCGGCCGCGATGGAGCAGTGGCTTGCTCGATGTGGTGATAGGGAG
TGACTGTATTTGCGACGAGCCTAGCGCGGTGGGAGTGGCCCGCCTCCTTA
GCTTGACCTTGAAGCCGGGCACTGGAGTGGGGTATATCACTGCTCCTGCC
CCCCAGCATAGGTAAGATATATGATTTGTTCTTAGAAATGGGATAGAAAA
GATTAATTAATTTCTTAATTAAATGAATCAATAAATAAGATAAAATAAAA
GGATGATGAATGAAAGAGAGGAAGACAGGGATGAATTAATGAATTAGAAT
AGATGAATAGGTCAATGAATGAATGCATGAGTAATGAAAGCAAAACTTAC
AAATGCACGCACCGAATTAAAAACAGGTATGGCGTCCACGCTCTTCCGCG
AGAGCTGGAGGCATGCGGGCTGAGCTTTGAACAGGAGGAGGTTACTGACG
AGGAGCTGTTGGAAGACCTTCAGGAGGCGGCATACATGCGCTTTCACCTC
TTCACGGTGCGGAGGATGAAGGAGGAGGGGCAGCAAGGAAGAGAGGCAGC
AGTAGCAGTAGTAGTAGCAGCTGCAGCTACAGCAACAGCAGCAGTAGCGG
CAACAGCAGCAGCAGCAGCAGCAACAACAACAACAGCAGCAACAGCAACA
GCAGCAACAGCAGCAGGAGTAGTAGCAGCAGCAGCAGCACTAGCAGCAGC
CACAACAGCAGCAACAGCAACAGCAGTAGCAGTAGCAGGAGGAGTTATGG
GAGCAGCACCAACAGCAGTAACAGGAGGAGCTGTCGATGCATGCGCACTG
CCCAGCATAGGTTCAATAGACGTGACAGAGGAAATGTAAATGTACGAAAG
CCAGGTACACATACCCACAC
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Coding sequence (CDS) from alignment at chr20:355403..357522-

>NO20G01140.1 ID=NO20G01140.1|Name=NO20G01140.1|organism=Nannochloropsis oceanica|type=CDS|length=1806bp|location=Sequence derived from alignment at chr20:355403..357522- (Nannochloropsis oceanica)
ATGCTCCGCACGACCTTGGCCCGGGAAGAAGTGGCAGTCCGCAACGCCGT
GGATAAGCTCTTGAGTCGGCAGCTGCAACAACAGGAGGATGGTCAATTCA
TGAGCTACGACAAAGAACAGACGCTCCAAGCTCTATTGCGAACGCCGCGC
CGTCGCTTTCTCTTCTTGGAAGCCGGTGGCGTGAAAGCATTGGTCGAGCT
ACTGAAAACACACGGTTTCGACCGTCCTATACCTGTATCTGAGCTCCTGA
GCATTATGCGTTTACTTATCCTATGCTGTCAGGACACGGAGAGTGCCGTG
GGAGTAGGGCTGTTCGGCCTACATCCGTGGATAAAACGGGTGCTGGCCTC
GGACAATGAAGAGGAAGGCCAGGAGGATGACGAGGCAACGGAGGTCCTGC
GAGAATATGCTGAGGAGATCGCCAGCCGCTGCGCTCGCGTTCGTGGGGGT
TTCCCCCTTCAAAGATTGGCATTATGCTCAGATTCGGCATTCTCGTCGTT
ACATTTGCCCGTACGTGTGCCTATTTATTCTCACTTTCGCACCACCACCA
TCACCCACGCTCAAAACCATCAGCCAGGGAAAGAAAATGAAAGCAAGGAT
CTCATCGTTCTGATTTCACCCATCGCCTATCGTATGAGCAGTCAAGCGGA
TACTGGTTATTTTCTATGGCCGGCTGCTACTATTCTCACTCGATTCATTT
TGATAAATTCTTCTTTTTTTGCTGGGAAGAGGGTGATGGAGATCGGAGCA
GGGTTGGGGTTGTGTGGTTTAGTTGCAGGGAGGGTTGCCAAAGAGGTGTT
GCTGACTGATCATAATTTAGCATGTGTGCGGCAAATGCAGGAGCATGTGA
GATTGAATCGTGATGATGGGATAGGGGGATGGGAGGAAGATCGAGTGACA
TCGAATGAAGGAGAGGCAGCGGCAGAGGCAGGATCAGCGGGAGCAACTTT
AGGAGCAACAGTAGCGCTTGTGCATCCAAGCACAATGAAAGTGCGGTGGT
TAGATTGGGATCGGCTGGAGGCCGTGTCGAAATTCACGTGGCAAGTGTCG
GAGAAGGCAGAAGAGAAGGGGATACGAGGGGGGCGGGAAGAGGAGGAAGG
AGCAAAGAGCGAGGTGGACGAAGAGTATGATAGAAAGGAGAATGCTGATT
ATCACTGTGTTTCAGAGGAGGAGATCGAAAGCTTTGGCCGGCCGCGATGG
AGCAGTGGCTTGCTCGATGTGGTGATAGGGAGTGACTGTATTTGCGACGA
GCCTAGCGCGGTGGGAGTGGCCCGCCTCCTTAGCTTGACCTTGAAGCCGG
GCACTGGAGTGGGGTATATCACTGCTCCTGCCCCCCAGCATAGGTATGGC
GTCCACGCTCTTCCGCGAGAGCTGGAGGCATGCGGGCTGAGCTTTGAACA
GGAGGAGGTTACTGACGAGGAGCTGTTGGAAGACCTTCAGGAGGCGGCAT
ACATGCGCTTTCACCTCTTCACGGTGCGGAGGATGAAGGAGGAGGGGCAG
CAAGGAAGAGAGGCAGCAGTAGCAGTAGTAGTAGCAGCTGCAGCTACAGC
AACAGCAGCAGTAGCGGCAACAGCAGCAGCAGCAGCAGCAACAACAACAA
CAGCAGCAACAGCAACAGCAGCAACAGCAGCAGGAGTAGTAGCAGCAGCA
GCAGCACTAGCAGCAGCCACAACAGCAGCAACAGCAACAGCAGTAGCAGT
AGCAGGAGGAGTTATGGGAGCAGCACCAACAGCAGTAACAGGAGGAGCTG
TCGATGCATGCGCACTGCCCAGCATAGGTTCAATAGACGTGACAGAGGAA
ATGTAA
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Synonyms
Publications