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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:240231..243245 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G00720.1 vs.
Match: EWM30572.1 (glycosyl family 5 [Nannochloropsis gaditana]) HSP 1 Score: 643.7 bits (1659), Expect = 6.500e-181 Identity = 329/586 (56.14%), Postives = 417/586 (71.16%), Query Frame = 0
Query: 10 EATPTLPL--SGMN-TSDSTEASPLHCRRQWAIKRHILSLLVTAPLLLMLLLQDVTPPT-------KMHRLLLQQPQLNKDGGSEMTREIATDFVMRKGDQLLLHGAPFRFISFNVPNLHVVEDESWHRASLWEQEDALQTIARMGGQVVRTYPLSIVGGLNNGTYTHVLGKGLYNEALLCDLDQLLVVADRLNVRLIIPFIDHWEWWGGIPQFTKLYNASFGDFYRSSEVKKGFKDLVNHVIMRRNTLTGRLYRDDPAILAWESGNELDYVDMD----EDRLSLP--LPSRGEMDKWMSELAAYIKGLDPNHLIVDGRLLNDREVSKVQLEDPHIDLISDHFYPNAANITFEERLEHVVSFTKGHKPFMVGEFGLVTPELVDVLAKRVIAEPAVAGALLWSLRSHNVNGGFYWHHEYDNYWAYHYPGFTSNSTDCEKDIMVIMEKHAYAIQGLPVPSASVPTRPEMIEGSSTEALAWRGAVGAQFYELERQEVMEMQEETGGLPEKGAAGAPSLKISAGLRSGGKWVKVSDKLLDSTNPYIPFNDSTAQPGKTYRYRIYGVNDAGQSVASSPLMITASVAPASSP 580
+ PTLP +G +++T P + + I ++T P L MLL +V +HR L + ++ FV+RK D+L L+G FRFISFNVPNLHVVEDE+WHR S WEQEDAL+TI+RMGGQVVR YP+SIVGGLNNGTYTH+LGKG+YNEAL DLD+LLVVA RL +R+IIPFIDHWEWWGG+ QF +L+NASF DFY S +K GF D V +++MR+NTLTG+LYRDDP ILAWE+GNELDYV+ D LS P LPS MDKW SELAA++K DPNHL++DGRLLN+R+VS++QL DPHIDLISDHFYPN + +FE RL ++SF+K HKPF+VGEFG+V+ + +D LAKRVI EPAVAGALLWSLRSH+ GGFYWH+EYD++WAYHY GF SN EK +M ++EKHAYAI+ VP+ ++P P++I+GS+T+A+AW+G+VGAQ YELER+EV + G+ GA + + GKW+++S+ L DS NPY+PF D+TAQPGK Y YRIY V+ AG+S S + I AS A AS P
Sbjct: 13 QVAPTLPFVRNGFQCVNEATMVQPCQNSTRKKYRCFIQLAILTIPAL-MLLFPEVKDRLGSSGFFPSVHRNLKHDMHSSAAKSFHGAKDALDQFVVRKKDRLFLNGEAFRFISFNVPNLHVVEDETWHRVSQWEQEDALETISRMGGQVVRIYPMSIVGGLNNGTYTHILGKGMYNEALFQDLDRLLVVAHRLEIRVIIPFIDHWEWWGGVSQFARLFNASFSDFYESPLIKAGFLDFVEYLLMRKNTLTGQLYRDDPTILAWETGNELDYVNDDTPHTNTHLSAPLMLPSLAVMDKWTSELAAFLKKRDPNHLVIDGRLLNNRDVSRMQLLDPHIDLISDHFYPN-TDFSFEARLTRMLSFSKRHKPFLVGEFGMVSSQTMDALAKRVIEEPAVAGALLWSLRSHSAQGGFYWHYEYDDFWAYHYLGFDSNPGTEEKKVMAVVEKHAYAIRNQTVPAPTIPRPPKLIDGSTTQAIAWQGSVGAQHYELERKEVALGYQLDTGMTASGADRTSTWQ-------EGKWIRISNNLSDSMNPYVPFMDATAQPGKIYEYRIYAVSSAGRSAPSPTMSIHASSA-ASRP 588
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G00720.1 ID=NO02G00720.1|Name=NO02G00720.1|organism=Nannochloropsis oceanica|type=mRNA|length=2774bp ACAGGAGCCAGGGTCTTCTCGATAGGCTGGGATTGTTGTCGTCTCGGGTT GACTTAGCTGTTTGCTCTGAAAGAGACGAAGGGCCTGCATAAGCTATGAC GCCCATACAGCTCCTATGGACAGAAGCCACGCCCACTCTGCCCTTAAGCG GGATGAATACCTCCGACAGCACCGAGGCCTCGCCCCTCCACTGCCGCCGG CAATGGGCCATCAAACGACACATCTTGTCCCTCCTCGTCACCGCTCCATT GCTTTTAATGTTGCTGCTGCAAGACGTCACGCCCCCTACAAAGATGCACC GCCTTCTGTTGCAGCAGCCGCAGCTCAACAAAGACGGAGGTAGCGAGATG ACCAGAGAAATCGCGACGGATTTTGTCATGCGGAAAGGTGACCAGCTGCT TTTGCACGGCGCACCCTTTCGCTTCATTTCTTTCAATGTGCCGAACTTGC ACGTGGTCGAGGACGAGAGCTGGCATCGTGCCTCACTGTGGGAGCAGGAG GACGCGCTGCAGACCATTGCGCGGATGGGTGGGCAGGTAGTGCGCACATA CCCCCTGTCGATCGTGGGAGGGCTGAACAACGGGACTTACACGCACGTGC TTGGGAAAGGGTTGTACAACGAAGCTCTTCTCTGTGACCTGGATCAGCTG CTAGTGGTGGCGGATCGGTTGAACGTCCGCTTGATCATCCCTTTCATCGA CCATTGGGAGTGGTGGGGAGGCATCCCGCAGTTTACCAAGCTGTACAATG CATCGTTCGGAGATTTTTATCGTTCTTCGGAGGTCAAGAAGGGCTTTAAG GACCTGGTCAATCATGTGATTATGCGGAGGAACACCTTGACTGGTCGATT GTACCGGGATGACCCTGCCATTTTGGCGTGGGAGAGCGGGAATGAATTGG ATTACGTAGATATGGATGAGGATAGGCTGAGCTTGCCCTTGCCAAGCCGC GGGGAAATGGACAAGTGGATGAGTGAATTGGCGGCATATATCAAAGGATT GGATCCGAATCATTTGATTGTCGATGGCCGATTGCTCAACGACCGGGAAG TGAGTAAGGTGCAGCTGGAAGACCCCCACATTGACTTGATTTCAGATCAT TTCTACCCTAATGCGGCGAACATTACTTTCGAAGAGCGGCTCGAGCACGT GGTCTCGTTCACAAAAGGTCATAAGCCTTTTATGGTGGGGGAGTTTGGGC TGGTGACCCCTGAATTGGTGGACGTGCTTGCAAAGCGCGTCATTGCTGAG CCGGCGGTAGCGGGGGCGTTGCTATGGTCCTTGCGCTCGCACAACGTCAA TGGTGGATTTTATTGGCATCACGAATACGACAATTACTGGGCGTACCACT ATCCGGGCTTCACCTCCAACTCAACTGACTGCGAAAAGGATATCATGGTC ATCATGGAAAAGCATGCCTATGCTATCCAAGGTCTGCCTGTCCCATCCGC CTCCGTGCCAACCCGCCCCGAGATGATTGAAGGGAGCAGCACCGAGGCTC TTGCGTGGCGGGGGGCTGTCGGCGCGCAGTTCTACGAGCTGGAGCGACAG GAGGTGATGGAAATGCAGGAGGAGACAGGGGGTTTGCCAGAGAAAGGAGC AGCTGGAGCACCATCGCTCAAGATTTCAGCAGGCTTGAGGAGTGGAGGGA AGTGGGTCAAGGTCTCGGACAAGCTACTGGATAGCACCAATCCCTACATC CCATTCAACGATTCGACGGCCCAGCCCGGCAAGACTTACCGCTACCGTAT ATACGGCGTCAATGATGCAGGCCAAAGCGTCGCTTCTTCCCCTTTAATGA TAACTGCCTCTGTCGCTCCTGCGTCCTCCCCTCCCTCTTCCTCTTCTCCT CCTCCTCCTTCTCCTTCTTCTCCTCCTTCTCCTTCTCCTCCTCCTCCTCT TCCTTCTCCTCTCCACCTCCCACCGCCGCGGGATCAAGTCCCCCCTTCTC TTTCCACGCCGGCGATTGTGTCTTTTGCGCCTTTCAAGCCGGAGCAAGCA CCTGTCTCGACACACACATCAGAGACAACAGCAGCAGCAGCGGCAGCTTT GACTCGACCAACTTCCTTGCGTCCGATACCTGTCTCGAAAGAAGCACCGG CGCCGTAGGAAATTCAATAGATGATCGTGAGTGGAGCACAAACGGGCCTG TGAGATAAGGATGAGAATGAGTGTGGATTGGGAAATGTTGTTGAAAAGAA AAGGATGAAGGATGGAGGGAAAGGTAGACGATGATCGCTAGGAACAATAA CGCAATTTTAGTGATTGCCGATAGTAGCAGCAACAAATAAGATTGCCAAT TGCAGCTGCAACAAAAGTATCAGCTCCAGAAGCGACGCTGGCGAAAGGTG AGGCAGAGACACATAGTTGAAGTCTATGAGTTAAATGGTCTTGATTGCTA AGTATGCAATGGTCTTGATGAGGAGCAAAGAAGGCAGGAACTATCGAGGT TTAATCACCAAGTGAGCCATTATGAGGGGAAAGCTTTCGAAAATTATCTC CGTATCAGTAATGCCATATAGCAGACTAGATTTTAAAAGTACATGTTGCA ATGTACGTATGCCCCAAAGCGTCAGATGACGTCTTAAAAAATAGATAAAG ACCAGGGAGCGCGTGACAATCGTGTATTTCCACGCGGTGCCATGGCAGGA AACACTCTCGAAATGCCAGTCCCGCTTCCTCCACTAGCACTGAAATGAGG TTGAAAATATGATCAAGCGAGGGGCGCTCCTTGTTCTCTAGAATACCCCT TGCAAGGGTGAGCAACGATGGTGA back to topprotein sequence of NO02G00720.1 >NO02G00720.1-protein ID=NO02G00720.1-protein|Name=NO02G00720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=671bp MTPIQLLWTEATPTLPLSGMNTSDSTEASPLHCRRQWAIKRHILSLLVTA PLLLMLLLQDVTPPTKMHRLLLQQPQLNKDGGSEMTREIATDFVMRKGDQ LLLHGAPFRFISFNVPNLHVVEDESWHRASLWEQEDALQTIARMGGQVVR TYPLSIVGGLNNGTYTHVLGKGLYNEALLCDLDQLLVVADRLNVRLIIPF IDHWEWWGGIPQFTKLYNASFGDFYRSSEVKKGFKDLVNHVIMRRNTLTG RLYRDDPAILAWESGNELDYVDMDEDRLSLPLPSRGEMDKWMSELAAYIK GLDPNHLIVDGRLLNDREVSKVQLEDPHIDLISDHFYPNAANITFEERLE HVVSFTKGHKPFMVGEFGLVTPELVDVLAKRVIAEPAVAGALLWSLRSHN VNGGFYWHHEYDNYWAYHYPGFTSNSTDCEKDIMVIMEKHAYAIQGLPVP SASVPTRPEMIEGSSTEALAWRGAVGAQFYELERQEVMEMQEETGGLPEK GAAGAPSLKISAGLRSGGKWVKVSDKLLDSTNPYIPFNDSTAQPGKTYRY RIYGVNDAGQSVASSPLMITASVAPASSPPSSSSPPPPSPSSPPSPSPPP PLPSPLHLPPPRDQVPPSLSTPAIVSFAPFKPEQAPVSTHTSETTAAAAA ALTRPTSLRPIPVSKEAPAP* back to topmRNA from alignment at chr2:240231..243245+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G00720.1 ID=NO02G00720.1|Name=NO02G00720.1|organism=Nannochloropsis oceanica|type=mRNA|length=3015bp|location=Sequence derived from alignment at chr2:240231..243245+ (Nannochloropsis oceanica) ACAGGAGCCAGGGTCTTCTCGATAGGCTGGGATTGTTGTCGTCTCGGGTT
GACTTAGCTGTTTGCTCTGAAAGAGACGAAGGGCCTGCATAAGCTATGAC
GCCCATACAGCTCCTATGGACAGAAGCCACGCCCACTCTGCCCTTAAGCG
GGATGAATACCTCCGACAGCACCGAGGTCAGTCACTTATATGCGCATGAA
TATTAACGCTGTCGACAGATCGTTCTTACCCTGCCCCAACGCTATCTCTA
TCTTCTCTTCAAAAAGGCCTCGCCCCTCCACTGCCGCCGGCAATGGGCCA
TCAAACGACACATCTTGTCCCTCCTCGTCACCGCTCCATTGCTTTTAATG
TTGCTGCTGCAAGACGTCACGCCCCCTACAAAGATGCACCGCCTTCTGTT
GCAGCAGCCGCAGCTCAACAAAGACGGAGGTAGCGAGATGACCAGAGAAA
TCGCGACGGATTTTGTCATGCGGAAAGGTGACCAGCTGCTTTTGCACGGC
GCACCCTTTCGCTTCATTTCTTTCAATGTGCCGAACTTGCACGTGGTCGA
GGACGAGAGCTGGCATCGTGCCTCACTGTGGGAGCAGGAGGACGCGCTGC
AGACCATTGCGCGGATGGGTGGGCAGGTAGTGCGCACATACCCCCTGTCG
ATCGTGGGAGGGCTGAACAACGGGACTTACACGCACGTGCTTGGGAAAGG
GTTGTACAACGAAGCTCTTCTCTGTGACCTGGATCAGCTGCTAGTGGTGG
CGGATCGGTTGAACGTCCGCTTGATCATCCCTTTCATCGACCATTGGGAG
TGGTGGGGAGGCATCCCGCAGTTTACCAAGCTGTACAATGCATCGTTCGG
AGATTTTTATCGTTCTTCGGAGGTCAAGAAGGGCTTTAAGGACCTGGTCA
ATCATGTGATTATGCGGAGGAACACCTTGACTGGTCGATTGTACCGGGAT
GACCCTGCCATTTTGGCGTGGGAGAGCGGGAATGAATTGGATTACGTAGA
TATGGATGAGGATAGGCTGAGCTTGCCCTTGCCAAGCCGCGGGGAAATGG
ACAAGTGGATGAGTGAATTGGCGGCATATATCAAAGGATTGGATCCGAAT
CATTTGATTGTCGATGGCCGATTGCTCAACGACCGGGAAGTGAGTAAGGT
GCAGCTGGAAGACCCCCACATTGACTTGATTTCAGATCATTTCTACCCTA
ATGCGGCGAACATTACTTTCGAAGAGCGGCTCGAGCACGTGGTCTCGTTC
ACAAAAGGTCATAAGCCTTTTATGGTGGGGGAGTTTGGGCTGGTGACCCC
TGAATTGGTGGACGTGCTTGCAAAGCGCGTCATTGCTGAGCCGGCGGTAG
CGGGGGCGTTGCTATGGTCCTTGCGCTCGCACAACGTCAATGGTGGATTT
TATTGGCATCACGAATACGACAATTACTGGGCGTACCACTATCCGGGTAA
AATACAGACAAAATACTGCTCGTTATCTGTTCTACTAATTTCTATGACCC
TCTCGTCGTCGAAAAGTGAATTTCAAATTGTGCACTCATCGGCAACCTAT
CCCCTTTTTTGCCTTTCCATCTCTACACCCTACACAATCACACGCAGGCT
TCACCTCCAACTCAACTGACTGCGAAAAGGATATCATGGTCATCATGGAA
AAGCATGCCTATGCTATCCAAGGTCTGCCTGTCCCATCCGCCTCCGTGCC
AACCCGCCCCGAGATGATTGAAGGGAGCAGCACCGAGGCTCTTGCGTGGC
GGGGGGCTGTCGGCGCGCAGTTCTACGAGCTGGAGCGACAGGAGGTGATG
GAAATGCAGGAGGAGACAGGGGGTTTGCCAGAGAAAGGAGCAGCTGGAGC
ACCATCGCTCAAGATTTCAGCAGGCTTGAGGAGTGGAGGGAAGTGGGTCA
AGGTCTCGGACAAGCTACTGGATAGCACCAATCCCTACATCCCATTCAAC
GATTCGACGGCCCAGCCCGGCAAGACTTACCGCTACCGTATATACGGCGT
CAATGATGCAGGCCAAAGCGTCGCTTCTTCCCCTTTAATGATAACTGCCT
CTGTCGCTCCTGCGTCCTCCCCTCCCTCTTCCTCTTCTCCTCCTCCTCCT
TCTCCTTCTTCTCCTCCTTCTCCTTCTCCTCCTCCTCCTCTTCCTTCTCC
TCTCCACCTCCCACCGCCGCGGGATCAAGTCCCCCCTTCTCTTTCCACGC
CGGCGATTGTGTCTTTTGCGCCTTTCAAGCCGGAGCAAGCACCTGTCTCG
ACACACACATCAGAGACAACAGCAGCAGCAGCGGCAGCTTTGACTCGACC
AACTTCCTTGCGTCCGATACCTGTCTCGAAAGAAGCACCGGCGCCGTAGG
AAATTCAATAGATGATCGTGAGTGGAGCACAAACGGGCCTGTGAGATAAG
GATGAGAATGAGTGTGGATTGGGAAATGTTGTTGAAAAGAAAAGGATGAA
GGATGGAGGGAAAGGTAGACGATGATCGCTAGGAACAATAACGCAATTTT
AGTGATTGCCGATAGTAGCAGCAACAAATAAGATTGCCAATTGCAGCTGC
AACAAAAGTATCAGCTCCAGAAGCGACGCTGGCGAAAGGTGAGGCAGAGA
CACATAGTTGAAGTCTATGAGTTAAATGGTCTTGATTGCTAAGTATGCAA
TGGTCTTGATGAGGAGCAAAGAAGGCAGGAACTATCGAGGTTTAATCACC
AAGTGAGCCATTATGAGGGGAAAGCTTTCGAAAATTATCTCCGTATCAGT
AATGCCATATAGCAGACTAGATTTTAAAAGTACATGTTGCAATGTACGTA
TGCCCCAAAGCGTCAGATGACGTCTTAAAAAATAGATAAAGACCAGGGAG
CGCGTGACAATCGTGTATTTCCACGCGGTGCCATGGCAGGAAACACTCTC
GAAATGCCAGTCCCGCTTCCTCCACTAGCACTGAAATGAGGTTGAAAATA
TGATCAAGCGAGGGGCGCTCCTTGTTCTCTAGAATACCCCTTGCAAGGGT
GAGCAACGATGGTGA back to topCoding sequence (CDS) from alignment at chr2:240231..243245+ >NO02G00720.1 ID=NO02G00720.1|Name=NO02G00720.1|organism=Nannochloropsis oceanica|type=CDS|length=2013bp|location=Sequence derived from alignment at chr2:240231..243245+ (Nannochloropsis oceanica) ATGACGCCCATACAGCTCCTATGGACAGAAGCCACGCCCACTCTGCCCTT AAGCGGGATGAATACCTCCGACAGCACCGAGGCCTCGCCCCTCCACTGCC GCCGGCAATGGGCCATCAAACGACACATCTTGTCCCTCCTCGTCACCGCT CCATTGCTTTTAATGTTGCTGCTGCAAGACGTCACGCCCCCTACAAAGAT GCACCGCCTTCTGTTGCAGCAGCCGCAGCTCAACAAAGACGGAGGTAGCG AGATGACCAGAGAAATCGCGACGGATTTTGTCATGCGGAAAGGTGACCAG CTGCTTTTGCACGGCGCACCCTTTCGCTTCATTTCTTTCAATGTGCCGAA CTTGCACGTGGTCGAGGACGAGAGCTGGCATCGTGCCTCACTGTGGGAGC AGGAGGACGCGCTGCAGACCATTGCGCGGATGGGTGGGCAGGTAGTGCGC ACATACCCCCTGTCGATCGTGGGAGGGCTGAACAACGGGACTTACACGCA CGTGCTTGGGAAAGGGTTGTACAACGAAGCTCTTCTCTGTGACCTGGATC AGCTGCTAGTGGTGGCGGATCGGTTGAACGTCCGCTTGATCATCCCTTTC ATCGACCATTGGGAGTGGTGGGGAGGCATCCCGCAGTTTACCAAGCTGTA CAATGCATCGTTCGGAGATTTTTATCGTTCTTCGGAGGTCAAGAAGGGCT TTAAGGACCTGGTCAATCATGTGATTATGCGGAGGAACACCTTGACTGGT CGATTGTACCGGGATGACCCTGCCATTTTGGCGTGGGAGAGCGGGAATGA ATTGGATTACGTAGATATGGATGAGGATAGGCTGAGCTTGCCCTTGCCAA GCCGCGGGGAAATGGACAAGTGGATGAGTGAATTGGCGGCATATATCAAA GGATTGGATCCGAATCATTTGATTGTCGATGGCCGATTGCTCAACGACCG GGAAGTGAGTAAGGTGCAGCTGGAAGACCCCCACATTGACTTGATTTCAG ATCATTTCTACCCTAATGCGGCGAACATTACTTTCGAAGAGCGGCTCGAG CACGTGGTCTCGTTCACAAAAGGTCATAAGCCTTTTATGGTGGGGGAGTT TGGGCTGGTGACCCCTGAATTGGTGGACGTGCTTGCAAAGCGCGTCATTG CTGAGCCGGCGGTAGCGGGGGCGTTGCTATGGTCCTTGCGCTCGCACAAC GTCAATGGTGGATTTTATTGGCATCACGAATACGACAATTACTGGGCGTA CCACTATCCGGGCTTCACCTCCAACTCAACTGACTGCGAAAAGGATATCA TGGTCATCATGGAAAAGCATGCCTATGCTATCCAAGGTCTGCCTGTCCCA TCCGCCTCCGTGCCAACCCGCCCCGAGATGATTGAAGGGAGCAGCACCGA GGCTCTTGCGTGGCGGGGGGCTGTCGGCGCGCAGTTCTACGAGCTGGAGC GACAGGAGGTGATGGAAATGCAGGAGGAGACAGGGGGTTTGCCAGAGAAA GGAGCAGCTGGAGCACCATCGCTCAAGATTTCAGCAGGCTTGAGGAGTGG AGGGAAGTGGGTCAAGGTCTCGGACAAGCTACTGGATAGCACCAATCCCT ACATCCCATTCAACGATTCGACGGCCCAGCCCGGCAAGACTTACCGCTAC CGTATATACGGCGTCAATGATGCAGGCCAAAGCGTCGCTTCTTCCCCTTT AATGATAACTGCCTCTGTCGCTCCTGCGTCCTCCCCTCCCTCTTCCTCTT CTCCTCCTCCTCCTTCTCCTTCTTCTCCTCCTTCTCCTTCTCCTCCTCCT CCTCTTCCTTCTCCTCTCCACCTCCCACCGCCGCGGGATCAAGTCCCCCC TTCTCTTTCCACGCCGGCGATTGTGTCTTTTGCGCCTTTCAAGCCGGAGC AAGCACCTGTCTCGACACACACATCAGAGACAACAGCAGCAGCAGCGGCA GCTTTGACTCGACCAACTTCCTTGCGTCCGATACCTGTCTCGAAAGAAGC ACCGGCGCCGTAG back to top
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