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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:66963..69814 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G00170.1 vs.
Match: EWM30653.1 (Phosphorylated CTD interacting factor 1, WW domain protein [Nannochloropsis gaditana]) HSP 1 Score: 511.5 bits (1316), Expect = 4.300e-141 Identity = 340/775 (43.87%), Postives = 435/775 (56.13%), Query Frame = 0
Query: 40 RKKKAALKPSFFVGGGRGRRQNEEDLMLGLLEEMGARMTQ-----------------------EQAGLKEEDYETEVSMRPLSSDEEDEEQE-----DVEEA-------------KGEVEEEEKEEEMEEKEQRQEEKPKATRTHYP-------IPSIVSTV---ITTGGCVSPHELWNPTLYVDKGTLNLPWWDSSSPGNSTGGSSTRILALPPPPPPHI-PSIHPHVEVARTRGVKELVDWFIGAALRQGNAADRAVLFTPMTSQLGKIMFLRRSFQIWMQDNKLQEREEKEGGRGLAV--GSACRRVLTDPVLPQTATCQQDLGLAKALTGEVIKLPPDIAVELCEALGLKALGLVSSLHEQTQHPPFLASSLPPTSMLRRKQSRLDQPPVLRSRHHAPCLYLPLSTLSDARLTLLEKNEALDVSLLKGHALRINEKHYQKLKTLYTKQ--HISRGPPRQARKHRPSSSSSSSSSPSSSACRFSSSLTKEEEDLFHERLGCLLFRYQALAATGRED--------------PSFHDADDACERSLPPRVFDVLASLFGAQMECFASPFNCRYSVFCSSQWDLDGYFGSVGSFFAFRPLNGMYVAHPPPLPTMVECMVKHMDRLLARCGPTRHLGFIVVVPAAFVSSSVPILNKLLQGEHPASSFLAWSLTVPADQYAFVAGSDHYQPRHYVRPEPSSNNSDADLLLLALLSPGARASSNYELTGGRQRQLLEAFASFKHEEARDSLGPPPPDMILPVSAREKEKDGGAEEWWW 745
++K + P G G EEDLM LLEEMGARMTQ ++ G EED E E + +EE + ++ D +E KG+ + + E E K + + P P ++S +++ VSP ELWNP+L +D+ TLNLPW D++ G+ P P + PHVEVAR RG+ EL WF+ AL+ R T + L R+ Q W +NK+ E + +G+ G R L DPVLP ++ C++D LAK LT I+LPP+ AVELCEALG KAL L+SSL +SSLP ++ RR+ SRLD PPVLRSR HAPCLYLPLS+LS ARL LLE NEAL++SLLKGHALRIN KHYQKLK LY ++ H + PP + P+ SS+ S SSS+ F L+ +ED FHERLGCLLFRYQALAAT R+ PS ADDA ER+LPPRV+DVLASLF +MECFASPFNCRY +CSSQ + D +FGSVGSFF F+PL GM++AHPP +V+ M+KHMD LL+RC +R LGF VV+ + VS + + P S F AWS+ V A YAF+AGSD+YQPR Y+ ++ DLLL+ALLSP A A Y+L R+ ++ EAF S+K+E ARD L PPP D+ P S R+ K GG EWWW
Sbjct: 45 KRKISVASPVVVRSRGIGTHNGEEDLMRDLLEEMGARMTQSINHFDAERRTNGLLSPSSVCKEKEQGGNEEDKEEEKQEADVEKNEEKQAKKPKKHHDTKEVNATRGSEGANRCGKGDGIPKRRRGEGEAKARGTKGGPGLATQEVSKQDQDKQTPQVLSNACVHLSSIARVSPLELWNPSLLIDQATLNLPWRDATGTGHRD--------TFPRPGTAFLLQGPDPHVEVARARGLVELARWFVSTALKHATEHPR----TEAGGSPPQAAILHRALQAWRWNNKVVEERGRVDSKGVKGWNGKGPRPRLRDPVLPGSSACERDFRLAKCLTSREIQLPPEAAVELCEALGRKALTLLSSLPS--------SSSLPSSAPPRRRASRLDHPPVLRSRRHAPCLYLPLSSLSPARLALLEANEALELSLLKGHALRINTKHYQKLKALYIQRPFHPASSPPSAS----PAPVLSSTPSSSSSSPPF---LSAAQEDEFHERLGCLLFRYQALAATARDSLASSSLPPSLPTSLPSCPVADDADERALPPRVYDVLASLFQVRMECFASPFNCRYRTYCSSQRETDCWFGSVGSFFEFQPLTGMFLAHPPRATEVVQAMIKHMDYLLSRCSSSRLLGFFVVLSSGLVSVDSSTATTI-RSPPPFSPFQAWSIRVAATDYAFIAGSDYYQPRRYIHSGSDDSDGLDDLLLVALLSPAAAADPAYQLNSTREEEVREAFGSYKNELARDRLEPPPKDLTNPASVRD-AKGGGTAEWWW 790
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G00170.1 ID=NO02G00170.1|Name=NO02G00170.1|organism=Nannochloropsis oceanica|type=mRNA|length=2360bp AATAACAGGGATCGACCAAATAGGAGAATACTATCCGTCCTTGCCAACCT CCCAACCCAAAATGCTGCGTCCTGCTGCTGCCTTTCGACCACCGCACAAA CACGGTACGCAAATTAAGAAGAAATGCCTAAGACACCTCGATGCTTCTCC TGCTAAAAGTGCCGGTGGTGTCGCAGTCAGGAAAAAAAAGGCAGCGCTGA AACCCTCCTTCTTCGTTGGCGGCGGGCGAGGGAGGCGGCAGAATGAGGAG GACCTGATGCTGGGCCTATTGGAGGAGATGGGGGCCCGCATGACGCAAGA GCAAGCCGGGTTAAAGGAGGAGGATTATGAGACAGAAGTGTCAATGCGGC CTTTATCCTCTGATGAAGAGGATGAGGAGCAGGAGGACGTCGAGGAGGCG AAGGGGGAGGTAGAGGAGGAGGAAAAAGAAGAGGAGATGGAGGAGAAGGA GCAGCGGCAGGAGGAGAAACCGAAAGCAACAAGGACACACTATCCCATTC CATCAATTGTCAGCACTGTGATAACCACCGGAGGCTGCGTCTCTCCCCAC GAGCTTTGGAATCCTACTCTCTACGTCGACAAGGGCACCCTTAATCTTCC CTGGTGGGACAGCAGCAGCCCCGGCAACAGTACTGGTGGAAGCAGCACAA GAATTCTCGCCCTTCCTCCTCCTCCACCCCCCCATATTCCTTCTATTCAC CCGCACGTGGAGGTGGCGCGGACCCGAGGCGTGAAGGAGCTGGTTGATTG GTTCATTGGCGCGGCGCTCAGACAAGGGAATGCTGCTGACCGGGCAGTCC TCTTTACGCCTATGACGAGTCAGCTGGGGAAAATAATGTTCCTGAGGCGA TCTTTTCAGATCTGGATGCAGGACAATAAGTTGCAGGAGAGGGAGGAAAA GGAGGGAGGGAGAGGGTTAGCTGTTGGAAGCGCGTGTCGCCGCGTGCTGA CGGATCCCGTGCTGCCACAAACGGCGACGTGCCAGCAGGACCTGGGCTTG GCAAAGGCTTTGACGGGAGAGGTGATCAAACTTCCTCCCGATATCGCAGT CGAGCTTTGCGAGGCTCTCGGCCTCAAAGCGCTTGGTCTCGTTTCCTCCC TTCATGAGCAAACGCAGCATCCCCCCTTCCTTGCTTCCTCCCTCCCTCCT ACTTCCATGCTCCGCCGCAAGCAAAGCCGACTAGACCAGCCCCCCGTCCT CCGCTCGCGGCATCACGCCCCTTGCCTGTATCTCCCCCTCTCCACTCTCT CAGATGCACGACTCACTTTATTGGAAAAAAATGAGGCGCTTGACGTTTCT TTGTTGAAGGGGCACGCGTTGAGGATCAACGAGAAGCATTATCAGAAGCT CAAGACGCTCTACACCAAGCAGCACATCAGTCGGGGACCGCCTCGTCAAG CACGCAAACACCGACCTTCCTCTTCCTCGTCCTCCTCTTCATCCCCCTCT TCCTCTGCCTGTCGGTTCTCTTCCTCGTTGACGAAAGAGGAAGAAGACCT TTTTCATGAACGCTTAGGTTGTCTCCTTTTCCGGTACCAGGCGCTCGCAG CCACTGGGCGTGAAGACCCCTCTTTTCACGACGCCGACGATGCCTGCGAA CGCTCTCTTCCTCCACGGGTATTTGACGTGCTCGCCTCCCTGTTTGGCGC GCAGATGGAGTGTTTCGCCTCGCCCTTCAACTGTCGATATTCGGTTTTTT GTTCGAGTCAGTGGGACTTAGATGGGTACTTTGGCTCCGTCGGCTCCTTT TTCGCGTTTCGGCCCTTGAACGGCATGTATGTCGCGCACCCCCCGCCGCT TCCGACCATGGTTGAATGCATGGTTAAGCACATGGACCGTCTCTTGGCCC GTTGCGGCCCCACTCGCCACCTCGGCTTCATCGTGGTCGTACCTGCCGCG TTCGTGTCGTCGTCCGTGCCCATTCTTAACAAACTCCTACAGGGGGAGCA CCCTGCCTCGTCCTTCCTGGCTTGGTCCTTGACAGTCCCAGCGGATCAAT ATGCCTTCGTCGCGGGAAGCGACCACTACCAGCCGCGCCATTATGTGCGA CCCGAGCCCTCCAGCAATAACAGCGACGCCGATCTCCTCTTACTAGCTTT GCTAAGCCCAGGGGCGCGTGCTTCCTCAAATTATGAGCTTACCGGAGGGC GGCAGCGGCAGCTACTCGAGGCCTTTGCAAGTTTCAAACATGAAGAAGCG AGGGATAGTTTGGGACCCCCGCCGCCAGACATGATCCTGCCTGTGTCAGC GCGCGAGAAGGAAAAAGATGGCGGAGCGGAAGAATGGTGGTGGTAGTACG ACTTGTAGTTGGAAAAGATAATGTAATTGAATAGAAAAAGAAATAAACAA TGTAGAAAAG back to topprotein sequence of NO02G00170.1 >NO02G00170.1-protein ID=NO02G00170.1-protein|Name=NO02G00170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=745bp MLRPAAAFRPPHKHGTQIKKKCLRHLDASPAKSAGGVAVRKKKAALKPSF FVGGGRGRRQNEEDLMLGLLEEMGARMTQEQAGLKEEDYETEVSMRPLSS DEEDEEQEDVEEAKGEVEEEEKEEEMEEKEQRQEEKPKATRTHYPIPSIV STVITTGGCVSPHELWNPTLYVDKGTLNLPWWDSSSPGNSTGGSSTRILA LPPPPPPHIPSIHPHVEVARTRGVKELVDWFIGAALRQGNAADRAVLFTP MTSQLGKIMFLRRSFQIWMQDNKLQEREEKEGGRGLAVGSACRRVLTDPV LPQTATCQQDLGLAKALTGEVIKLPPDIAVELCEALGLKALGLVSSLHEQ TQHPPFLASSLPPTSMLRRKQSRLDQPPVLRSRHHAPCLYLPLSTLSDAR LTLLEKNEALDVSLLKGHALRINEKHYQKLKTLYTKQHISRGPPRQARKH RPSSSSSSSSSPSSSACRFSSSLTKEEEDLFHERLGCLLFRYQALAATGR EDPSFHDADDACERSLPPRVFDVLASLFGAQMECFASPFNCRYSVFCSSQ WDLDGYFGSVGSFFAFRPLNGMYVAHPPPLPTMVECMVKHMDRLLARCGP TRHLGFIVVVPAAFVSSSVPILNKLLQGEHPASSFLAWSLTVPADQYAFV AGSDHYQPRHYVRPEPSSNNSDADLLLLALLSPGARASSNYELTGGRQRQ LLEAFASFKHEEARDSLGPPPPDMILPVSAREKEKDGGAEEWWW* back to topmRNA from alignment at chr2:66963..69814+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G00170.1 ID=NO02G00170.1|Name=NO02G00170.1|organism=Nannochloropsis oceanica|type=mRNA|length=2852bp|location=Sequence derived from alignment at chr2:66963..69814+ (Nannochloropsis oceanica) AATAACAGGGATCGACCAAATAGGAGAATACTATCCGTCCTTGCCAACCT
CCCAACCCAAAATGCTGCGTCCTGCTGCTGCCTTTCGACCACCGCACAAA
CACGGTACGCAAATTAAGAAGAAATGCCTAAGACACCTCGATGCTTCTCC
TGCTAAAAGTGCCGGTGGTGTCGCAGTCAGGAAAAAAAAGGCAGCGCTGA
AACCCTCCTTCTTCGTTGGCGGCGGGCGAGGGAGGCGGCAGAATGAGGAG
GACCTGATGCTGGGCCTATTGGAGGAGATGGGGGCCCGCATGACGCAAGA
GCAAGCCGGGTTAAAGGAGGAGGATTATGAGACAGAAGTGTCAATGCGGC
CTTTATCCTCTGATGAAGAGGATGAGGAGCAGGAGGACGTCGAGGAGGCG
AAGGGGGAGGTAGAGGAGGAGGAAAAAGAAGAGGAGATGGAGGAGAAGGA
GCAGCGGCAGGAGGAGAAACCGAAAGCAACAAGGACACACTATCCCATTC
CATCAATTGTCAGCACTGTGATAACCACCGGAGGCTGCGTCTCTCCCCAC
GAGCTTTGGAATCCTACTCTCTACGTCGACAAGGGCACCCTTAATCTTCC
CTGGTGGGACAGCAGCAGCCCCGGCAACAGTACTGGTGGAAGCAGCACAA
GAATTCTCGCCCTTCCTCCTCCTCCACCCCCCCATATTCCTTCTATTCAC
CCGCACGTGGAGGTGGCGCGGACCCGAGGCGTGAAGGAGCTGGTTGATTG
GTTCATTGGCGCGGCGCTCAGACAAGGGAATGCTGCTGACCGGGCAGTCC
TCTTTACGCCTATGACGAGTCAGCTGGGGAAAATAATGTTCCTGAGGCGA
TCTTTTCAGATCTGGATGCAGGACAATAAGTTGCAGGAGAGGGAGGAAAA
GGAGGGAGGGAGAGGGTTAGCTGTTGGAAGCGCGTGTCGCCGCGTGCTGA
CGGATCCCGTGCTGCCACAAACGGCGACGTGCCAGCAGGACCTGGGCTTG
GCAAAGGCTTTGACGGGAGAGGTGGTAAGTTGATGTCCCAATTATTCTTA
TTCCAGGTCTCTTCTCACCTCTTCAAGTCCCTTCACAGACTCACCGTCCT
CGGCGTTTCCCCTCCCTTGTTCTCCCCCAGATCAAACTTCCTCCCGATAT
CGCAGTCGAGCTTTGCGAGGCTCTCGGCCTCAAAGCGCTTGGTCTCGTTT
CCTCCCTTCATGAGCAAACGCAGCATCCCCCCTTCCTTGCTTCCTCCCTC
CCTCCTACTTCCATGCTCCGCCGCAAGCAAAGCCGACTAGACCAGCCCCC
CGTCCTCCGCTCGCGGCATCACGCCCCTTGCCTGTATCTCCCCCTCTCCA
CTCTCTCAGATGCACGACTCACTTTATTGGAAAAAAATGAGGCGCTTGAC
GTTTCTTTGTTGAAGGGGCACGCGTTGAGGATCAACGAGAAGCATTATCA
GAAGCTCAAGGTAGGGAGGACTGAAGGGAGGAGTGGCGGGAGGGGAATAG
ATAAAAAAGGGCGAAGGGAAAGATCAATTTACAATATGCTTTATCCTCTC
TGAATTTTACTGATTTATTGTCTTATCTTCCTCTGCAGACGCTCTACACC
AAGCAGCACATCAGTCGGGGACCGCCTCGTCAAGCACGCAAACACCGACC
TTCCTCTTCCTCGTCCTCCTCTTCATCCCCCTCTTCCTCTGCCTGTCGGT
TCTCTTCCTCGTTGACGAAAGAGGAAGAAGACCTTTTTCATGAACGCTTA
GGTTGTCTCCTTTTCCGGTACCAGGCGCTCGCAGCCACTGGGCGTGAAGA
CCCCTCTTTTCACGACGCCGACGATGCCTGCGAACGCTCTCTTCCTCCAC
GGGTATTTGACGTGCTCGCCTCCCTGTTTGGCGCGCAGATGGAGTGTTTC
GCCTCGCCCTTCAACTGTCGATATTCGGTTTTTTGTTCGAGTCAGTGGGA
CTTAGATGGGTACTTTGGCTCCGTCGGCTCCTTTTTCGCGTTTCGGCCCT
TGAACGGCATGTATGTCGCGCACCCCCCGCCGCTTCCGACCATGGTTGAA
TGCATGGTTAAGGTAAGGATGACAGGACGATGTAAGGGAGTCCAAGAGAA
TCGCGGACGTCCCCATATATGGACATGTCGCACCAATGCTGGCGCACTCC
CCGTATCTTTTTGTCCAGCGAAGCAAAATCCCTCCCGGATCCAATCCTTG
TACAGCTCATGTTAAGAGCTGGAAGGCCGGCGTGTCGGACGGGCATTTCC
ATGTATTCAACCATTTGAGAGTGAGCTCACGCGCACACACATATCATATA
ACCCCACGATCACACCCCAGCACATGGACCGTCTCTTGGCCCGTTGCGGC
CCCACTCGCCACCTCGGCTTCATCGTGGTCGTACCTGCCGCGTTCGTGTC
GTCGTCCGTGCCCATTCTTAACAAACTCCTACAGGGGGAGCACCCTGCCT
CGTCCTTCCTGGCTTGGTCCTTGACAGTCCCAGCGGATCAATATGCCTTC
GTCGCGGGAAGCGACCACTACCAGCCGCGCCATTATGTGCGACCCGAGCC
CTCCAGCAATAACAGCGACGCCGATCTCCTCTTACTAGCTTTGCTAAGCC
CAGGGGCGCGTGCTTCCTCAAATTATGAGCTTACCGGAGGGCGGCAGCGG
CAGCTACTCGAGGCCTTTGCAAGTTTCAAACATGAAGAAGCGAGGGATAG
TTTGGGACCCCCGCCGCCAGACATGATCCTGCCTGTGTCAGCGCGCGAGA
AGGAAAAAGATGGCGGAGCGGAAGAATGGTGGTGGTAGTACGACTTGTAG
TTGGAAAAGATAATGTAATTGAATAGAAAAAGAAATAAACAATGTAGAAA
AG back to topCoding sequence (CDS) from alignment at chr2:66963..69814+ >NO02G00170.1 ID=NO02G00170.1|Name=NO02G00170.1|organism=Nannochloropsis oceanica|type=CDS|length=2235bp|location=Sequence derived from alignment at chr2:66963..69814+ (Nannochloropsis oceanica) ATGCTGCGTCCTGCTGCTGCCTTTCGACCACCGCACAAACACGGTACGCA AATTAAGAAGAAATGCCTAAGACACCTCGATGCTTCTCCTGCTAAAAGTG CCGGTGGTGTCGCAGTCAGGAAAAAAAAGGCAGCGCTGAAACCCTCCTTC TTCGTTGGCGGCGGGCGAGGGAGGCGGCAGAATGAGGAGGACCTGATGCT GGGCCTATTGGAGGAGATGGGGGCCCGCATGACGCAAGAGCAAGCCGGGT TAAAGGAGGAGGATTATGAGACAGAAGTGTCAATGCGGCCTTTATCCTCT GATGAAGAGGATGAGGAGCAGGAGGACGTCGAGGAGGCGAAGGGGGAGGT AGAGGAGGAGGAAAAAGAAGAGGAGATGGAGGAGAAGGAGCAGCGGCAGG AGGAGAAACCGAAAGCAACAAGGACACACTATCCCATTCCATCAATTGTC AGCACTGTGATAACCACCGGAGGCTGCGTCTCTCCCCACGAGCTTTGGAA TCCTACTCTCTACGTCGACAAGGGCACCCTTAATCTTCCCTGGTGGGACA GCAGCAGCCCCGGCAACAGTACTGGTGGAAGCAGCACAAGAATTCTCGCC CTTCCTCCTCCTCCACCCCCCCATATTCCTTCTATTCACCCGCACGTGGA GGTGGCGCGGACCCGAGGCGTGAAGGAGCTGGTTGATTGGTTCATTGGCG CGGCGCTCAGACAAGGGAATGCTGCTGACCGGGCAGTCCTCTTTACGCCT ATGACGAGTCAGCTGGGGAAAATAATGTTCCTGAGGCGATCTTTTCAGAT CTGGATGCAGGACAATAAGTTGCAGGAGAGGGAGGAAAAGGAGGGAGGGA GAGGGTTAGCTGTTGGAAGCGCGTGTCGCCGCGTGCTGACGGATCCCGTG CTGCCACAAACGGCGACGTGCCAGCAGGACCTGGGCTTGGCAAAGGCTTT GACGGGAGAGGTGATCAAACTTCCTCCCGATATCGCAGTCGAGCTTTGCG AGGCTCTCGGCCTCAAAGCGCTTGGTCTCGTTTCCTCCCTTCATGAGCAA ACGCAGCATCCCCCCTTCCTTGCTTCCTCCCTCCCTCCTACTTCCATGCT CCGCCGCAAGCAAAGCCGACTAGACCAGCCCCCCGTCCTCCGCTCGCGGC ATCACGCCCCTTGCCTGTATCTCCCCCTCTCCACTCTCTCAGATGCACGA CTCACTTTATTGGAAAAAAATGAGGCGCTTGACGTTTCTTTGTTGAAGGG GCACGCGTTGAGGATCAACGAGAAGCATTATCAGAAGCTCAAGACGCTCT ACACCAAGCAGCACATCAGTCGGGGACCGCCTCGTCAAGCACGCAAACAC CGACCTTCCTCTTCCTCGTCCTCCTCTTCATCCCCCTCTTCCTCTGCCTG TCGGTTCTCTTCCTCGTTGACGAAAGAGGAAGAAGACCTTTTTCATGAAC GCTTAGGTTGTCTCCTTTTCCGGTACCAGGCGCTCGCAGCCACTGGGCGT GAAGACCCCTCTTTTCACGACGCCGACGATGCCTGCGAACGCTCTCTTCC TCCACGGGTATTTGACGTGCTCGCCTCCCTGTTTGGCGCGCAGATGGAGT GTTTCGCCTCGCCCTTCAACTGTCGATATTCGGTTTTTTGTTCGAGTCAG TGGGACTTAGATGGGTACTTTGGCTCCGTCGGCTCCTTTTTCGCGTTTCG GCCCTTGAACGGCATGTATGTCGCGCACCCCCCGCCGCTTCCGACCATGG TTGAATGCATGGTTAAGCACATGGACCGTCTCTTGGCCCGTTGCGGCCCC ACTCGCCACCTCGGCTTCATCGTGGTCGTACCTGCCGCGTTCGTGTCGTC GTCCGTGCCCATTCTTAACAAACTCCTACAGGGGGAGCACCCTGCCTCGT CCTTCCTGGCTTGGTCCTTGACAGTCCCAGCGGATCAATATGCCTTCGTC GCGGGAAGCGACCACTACCAGCCGCGCCATTATGTGCGACCCGAGCCCTC CAGCAATAACAGCGACGCCGATCTCCTCTTACTAGCTTTGCTAAGCCCAG GGGCGCGTGCTTCCTCAAATTATGAGCTTACCGGAGGGCGGCAGCGGCAG CTACTCGAGGCCTTTGCAAGTTTCAAACATGAAGAAGCGAGGGATAGTTT GGGACCCCCGCCGCCAGACATGATCCTGCCTGTGTCAGCGCGCGAGAAGG AAAAAGATGGCGGAGCGGAAGAATGGTGGTGGTAG back to top
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