NO19G00030.3, NO19G00030.3 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO19G00030.3
Unique Name	NO19G00030.3
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	5296
Alignment location	chr19:3068..10880 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr19	genome	chr19:3068..10880 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO19G00030.3 vs.
Match: EWM23491.1 (propionyl- carboxylase [Nannochloropsis gaditana])

HSP 1 Score: 625.2 bits (1611), Expect = 1.800e-175
Identity = 307/348 (88.22%), Postives = 330/348 (94.83%), Query Frame = 0

Query:   94 EVRQGGGPVARAKHEQRGKLYVRERIERLVDPGTPFLELSALAGRDMYGKEKVPAGGIVTGIGRVAGVECMLVANDATVKGGTYYPITVKKHLRAQEIAAQNRLPCISMVDSGGAFLPKQDEVFPDRDHFGRIFYNQANMSAAGIPQIAVVMGSCTAGGAYVPAMSDESVIVKGTGTIFLGGPPLVKAATGEVVSAEDLGGADVHCRVSGVADHYATDDVHALEITRAIVASLNVPRSSTAAFSPSNKAQDAFEEPLYSGQELGGLIPMDPKKPFDVRSVIGRVVDGSRFQEFKALYGPTIVTGFARIHGILTGIVANNGILFSESALKAAHFIELCSQRNIPLVFLQ 442
            +V QGGG +AR+KHEQRGKLYVRERIERLVDPGTPFLELS LAGR++Y ++KVPAGGIVTGIGRVAG+ECMLVANDATVKGGTYYPITVKKHLRAQEIA+QN+LPCI +VDSGGAFLP+QDEVFPDRDHFGRIF+NQANMSAAGIPQIAVVMGSCTAGGAYVPAMSDESVIVKG+GTIFLGGPPLVKAATGEVVSAEDLGGADVHCR SGV DHYATDD+HALEITR+IVASLNVP + TAAFSP+ K    +EEPLYS  ELGGL+P+DPK+PFDVRSVI RVVDGSRFQEFKA YGPTIVTGFARIHGILTGIVANNGILFSESALKAAHFIELCSQR+IPLVFLQ
Sbjct:   73 QVYQGGGELARSKHEQRGKLYVRERIERLVDPGTPFLELSPLAGRELYDQDKVPAGGIVTGIGRVAGLECMLVANDATVKGGTYYPITVKKHLRAQEIASQNKLPCIYLVDSGGAFLPRQDEVFPDRDHFGRIFFNQANMSAAGIPQIAVVMGSCTAGGAYVPAMSDESVIVKGSGTIFLGGPPLVKAATGEVVSAEDLGGADVHCRTSGVVDHYATDDLHALEITRSIVASLNVPEARTAAFSPNGKTGGPYEEPLYSPDELGGLVPLDPKRPFDVRSVIARVVDGSRFQEFKAFYGPTIVTGFARIHGILTGIVANNGILFSESALKAAHFIELCSQRHIPLVFLQ 420

The following BLAST results are available for this feature:

BLAST of NO19G00030.3 vs.

BLAST of NO19G00030.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM23491.1	1.800e-175	88.22	propionyl- carboxylase [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO19G00030	NO19G00030	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO19G00030.3	NO19G00030.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO19G00030.3.cds1	NO19G00030.3.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G00030.3.cds2	NO19G00030.3.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G00030.3.cds3	NO19G00030.3.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G00030.3.cds4	NO19G00030.3.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G00030.3.cds5	NO19G00030.3.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G00030.3.cds6	NO19G00030.3.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G00030.3.cds7	NO19G00030.3.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G00030.3.cds8	NO19G00030.3.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G00030.3.cds9	NO19G00030.3.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G00030.3.cds10	NO19G00030.3.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr19:3068..10880-
coding sequence from alignment at chr19:3068..10880-

mRNA sequence

>NO19G00030.3 ID=NO19G00030.3|Name=NO19G00030.3|organism=Nannochloropsis oceanica|type=mRNA|length=5296bp
ATGCTGGCGGCTTGGCTCCGCACTGGGGCGGCAGCAAGGGCAGCGAGGGC
AGCACCAGCGGCATGGACATCCCCCCTCTTTCAGCTTCAGCATCAACGCC
TTGCCTTCGCCATCACACCTGCCTCATTGCGGGCACCGGCCTCCTCCTCT
TCCATTGCTTCTCGTAACATGCCTTTGTTTCCCGTACTACCTGACCCGGC
CGAGCCCTGGTCGGAGGACTTCAAGAGCAACAAGCTGGAAATGGATCACC
TTGTCTCCCAGCTTGACACCGTCGTGGAAGAGGTCCGTCAAGGCGGAGGC
CCCGTAGCCCGGGCGAAGCACGAGCAGCGGGGGAAGCTGTATGTAAGAGA
GCGTATCGAACGGTTGGTGGACCCCGGGACGCCATTTTTGGAGCTGTCGG
CCTTGGCAGGACGGGATATGTACGGCAAGGAAAAGGTGCCAGCCGGGGGC
ATCGTGACGGGCATCGGGCGCGTAGCAGGTGTGGAGTGTATGCTGGTGGC
CAACGACGCCACGGTCAAGGGGGGCACGTACTACCCCATCACCGTCAAGA
AGCACCTTCGGGCCCAGGAGATCGCGGCTCAGAACCGGCTGCCCTGCATC
TCCATGGTCGACTCCGGCGGCGCCTTCCTCCCCAAGCAGGATGAGGTCTT
CCCCGACCGAGACCACTTCGGACGCATTTTCTACAACCAGGCCAACATGT
CGGCCGCCGGCATCCCCCAAATCGCGGTCGTGATGGGGTCCTGCACTGCT
GGAGGTGCCTATGTGCCCGCAATGTCAGACGAGAGTGTGATTGTCAAGGG
CACGGGTACCATATTCCTGGGAGGCCCGCCCCTGGTGAAGGCTGCGACAG
GCGAAGTCGTCTCGGCCGAAGACTTGGGCGGTGCCGACGTGCACTGTCGC
GTCTCGGGCGTGGCGGACCACTACGCCACTGACGACGTCCATGCCCTCGA
AATCACCAGGGCCATCGTGGCCAGCTTAAATGTCCCGCGCTCCAGCACTG
CGGCTTTCTCCCCGTCTAACAAGGCTCAAGACGCCTTCGAAGAGCCGCTC
TATTCCGGCCAGGAGCTGGGCGGGCTCATTCCGATGGACCCCAAAAAGCC
TTTTGACGTCCGCAGTGTTATCGGGCGGGTGGTGGACGGCTCTCGATTCC
AGGAGTTCAAGGCACTGTATGGCCCCACCATCGTCACGGGCTTCGCGCGT
ATTCATGGCATTCTCACCGGCATCGTGGCCAACAACGGCATCTTATTCTC
GGAGTCTGCCCTCAAGGCCGCTCACTTCATAGAGCTCTGCTCCCAACGCA
ATATCCCTCTCGTCTTTCTCCAGGTAGGGATCCCTTCATCCAAACCTCCC
TCCCCCTCCCTTTCTCCTTCTTTCTGTTCCCCTTTCTCTCCTCCTTCACT
CGCTCCCTTCGTCGTAATCACAGCTGGCGTGTCATCCCTATTTGCTGCTC
TTGCTTCCTTTTTCCTTTTTCCCCTACATTCCTCTCCTTCATTGCCGAGA
CACCTTGATCCATGATGAATATCTGCTTCCACACCTCGCTTTTTCGTTCG
CATACTCCCCACCTAACCTTCACGAGCCTTGATTGTCGTTCCGAGTCCGA
TGAGGCTCATCCGCCCTCCCTCTCCCTTTTTTGCTCTTTCCTTCCTTCCC
CTCCTCAGAACATCACGGGCTTCATGGTGGGTCGGAAGTACGAGAATGAG
GGTATCGCCAAAAACGGGGCTAAGCTCGTCACAGCGGTCTCCACCTCCAA
GGTAGGCGCGCCCTCCCTCCCTCTTCTCTTCCTTCCCGTTTCCTCCGCCC
CCCTTCCTTCCCTCCTTTCTTTTCGCTCTCATCCTCATTGTACTTCTCTT
TCTTCCGGGGTAAGCGAACACTACCAGCCTTTACTTCTTTCCTCTCTGCA
CTCTCTTCCTCATTCCTGCATTTTCCCCTCCGCGCAAGGATGTCAACTGC
TTTTCATCCTCGGCGCTTCCTTGTCCACCCTCCTCTCTTTTCTGTCCCTT
CTCTGCATCCTTGTGTGCGTGCTTTATTACGAAGTGAGCGATGCCGGAAT
GTGCGGGCGACCTGGTCCTCCTCCACTGATTCTCTCGCTCTTTCCTCCCT
CTCTTCCTCGCTAATTTCCTCTCCCTAGGTCCCTAAGCTGACCCTTCTGA
TCGCGGGCTCTTACGGTGCGGGCAACTATGGCATGTGCGGACGTGCCTTT
TCCCCTCGCTTTTTGTTTATGTGGCCAAACGCCAAGATCAGCGTGATGGG
AGGGGAGCAAGCTGCAAATGTACTAGCCACTGTTGCCGCTCAAGGAAAGG
AATGGACAGCAGAAGAAGAAACCGCTTTCAAGGCTCCTATTCTAGAGAAA
TTCAACCGCGAATCTTCTTGCTACTACTCCTCGGCGCGTCTGTGGGACGA
CGGCGTGATCCGACCCCAAGATACCCGCCAAGTCCTGGGGCTGGCGTTGG
CTGTGGCGGTAAAGGAGCAGATGGAAAAGACAAGATTTGGAGTGTTTCGG
ATGTGAGCAGACGGAGAAGAACAAAAGTAATAGAAGAATAACGGAGAGGG
CATGATTGGCTTGTTATCTCGGCTGCATTGAAGGAGGGCAGAAGAAGCGG
GGATAGGGTCAGCGGGTATGATCACAGAAGAAGAGATGGAAATCCATAGT
AGCATGCAGAACGGATCAATTCCCATGTCCTAATTGTATAAGAGCAATCT
TAGGGTTAATAGAGCAAAGGATATGAGGGAGGATAGCATAATCGGAGGAA
AAGGTTATCCACTCAGGGTGTACATTCACTGGTGCAATGTGTCAGGTTCG
AGAGAGGAAGCGAGTACAAAAGAATTCAAAAAGAGAGGGAAAGCAAAGAT
AGGTCAAGATAAGCACGCTGCTTGTATTAACGAGGAATGTGATGAATAAA
AGAGGGTACTTAATGATTAAAAAAGGAACTGAAAGAAAAGATCATTCGAT
TGATCAAAGGAGGGTAGTGTCATATATCGGTTGATCAAAGTGGGTAAGTG
TCATATAGGTAGTGTTAGGCCAATTTACGGGGTAGTGTCATGTATTGGAG
GAGGAGATCATCGACCAAGCTTCTTCTGTCGACCTTTAAATGAGGATTTC
ATCAAAGTCATCGAAAGGAATGCTTAAAACTCTTGATCAGACTTCCCCTG
TGTTGACTTGTTTATACCCTTCATTCACACTGTCCTAAGTGTTAGGCCTA
TTTAGTGGTAAATAAGCCCCCTTGGAAGGGGCGCTCAAGGAGCGCTGCAA
TGGGCGCGGAGCACTTCATATCCAAATTAGAAGAAGAAAGTCCCTTCAAA
TGGAAATAAGCTATTCGATGCTGACTATCAAGCCTTGTAGTATTGCTTCC
TCATTTACATCACACTATATGTAGGAGGGGTGGAACTTGGACCAAGTTCC
TCCGTTCCGATCCTTCCACAACGCAACAAAGTCAACCAAATAGCCAGATC
TACTTCCAAGGAACACAATGTTTCTTTCTACGGTATTTATGCATCCTTCT
TCGAGGTCATCTTTGGTTTCTTCCTCGCTTCATCTGACCTCTTCTGCTTT
CTCCTGACTTTCTCCGACCCCGACGTTTTCTTTCTTTTCTTTTTTGGGGG
GATCAAGCCAGTGTGTCCTGCAGGTGGTGTCACAAGCTCCATTGGTCCAG
GGTAAAACGCTGATCCCGCAGACACTATTGTCTCCAGCTGTGATGCTTCT
GTGTTTTCTGCTATTTTTCTGGGACGTCTCTTCATTTTCGCTACTTTTTC
TCATTCACTGTCATAATCGTCTTCTGCTTCTTGCTGTCGTTGTACTTCTT
CTGCTTCACTCTCTTGTTCTAGTTTCTCCGCCACATCGTATTGTCGTGTT
TCCTCTTGCACTTCTTGCTCATCATCTTCTTCTTCTTCTTGCTCATCATC
TCTTTCTTCTTCTTGTTCTTGTTCTCCCACGTTATATTGACGTATTTCAT
TTTGTTCCCCGTATGCTTCCTCTCCTTCGTTTTCCATCCTCCTGCGTTCT
CTCATTTTTGGGGCTGCTTGCTCTTTTTCTTTCTTGCCACTTCTTGTCTT
CGTTTTCTTGCTGTGTTCTTTTTCCGTTTTCTTGCTGCCTCTTTCTTAAT
ATCCACCTTGTGTGCCTTGTTCAATGATTGAAAAAGTCCATACCCGATGT
TATTGCAGTCACACAGCTCTGTCATAGTATCTTTATAGTGTCGGACCAGT
TGTTTCATAGAACGCAACACCAAACGTAGCGCTGTCTTATCATATTTCAA
CATCTTTCTCGAATTTTTTACCACTGCCTTCTCGCTTGCAGTGATACACC
TGGACAAGTACTCCACGGTCAATCGGTCTGGTTCCACCTCCTTTTCCTGC
TCTCCCTCCTCCTCTTCTTCATTAGCTGCACTCTCCTCCTCATCATGATT
TTCATCAGTATCCGTAGCTGACCGATCCGAGCCCTCGTCTTCTGCGGCCC
GTTCCGTGTTCTCACCAAGAAGCTCTTTCTGCAACCCAATTATTGTCATG
AGCCCTGCACCAGGCAACGGTATTGATCGGACTCTTTCCTCCGCCTCTGG
CTTTCGTTCCTTCGCGTTCGCCCTCAACCTCATGGTCCTTATTGCCTCAG
GCCATTCCGTGTCTTTCTTTCCTTCCACCCAACTTCTCAAAGTTGAACAC
AAACGCTTGGCCACCTCGGCTCCTTCCTTTTGTGTCAAGGTCGTGCTTGT
CAAATGTGGTTCAAGCGCCAACAAGTGTCGTCTTAGCGTGACCATGTATT
AAAAAAAAAATGGCCGAGATATAAGCCACTTTCCTTCTCAGTTGCAAAGC
ATCCAAGGGGGCCTCACGGGTGAAAATCCCTAGATCGACGAATTCACCTC
TTTTGCAGGCTTGGATGAAACTACCCAGTCCAGATTCAACCCATCTCTCA
GCCAACACACTGTTCGCTTGTGGCGTCTTTGTGGGTGTTTATATATGTGA
GTGTTCGAGGCGGTGGGTGCGGATGCACATGGCTGTCCATCCCCCCGACG
CAATATCACTCTACCAGTACCTTGCATTCATCCGCAGTTCCTTTCGCATG
CAGTTCCTTGATCACAACGTTAGTACCATATCGTAGCCTGGACGCATACT
CCCGCACTGCTTTGGAAATTCGATCCCCAGACTGAATTCTTCGGTCTCGG
TCCGCCATCGATTCTTCTTCCGTCGGAGGGCGCTTCACTCTGTTAGGATT
CTGATGAGGTCCCATGGACTTGACTCAGGAACGTTAGAATTCGGCGATGG
TGACGATGACAAAGAAGTCCGCCACACGCTCAACAAAAAGCCCTGT

protein sequence of NO19G00030.3

>NO19G00030.3-protein ID=NO19G00030.3-protein|Name=NO19G00030.3|organism=Nannochloropsis oceanica|type=polypeptide|length=505bp
MLAAWLRTGAAARAARAAPAAWTSPLFQLQHQRLAFAITPASLRAPASSS
SIASRNMPLFPVLPDPAEPWSEDFKSNKLEMDHLVSQLDTVVEEVRQGGG
PVARAKHEQRGKLYVRERIERLVDPGTPFLELSALAGRDMYGKEKVPAGG
IVTGIGRVAGVECMLVANDATVKGGTYYPITVKKHLRAQEIAAQNRLPCI
SMVDSGGAFLPKQDEVFPDRDHFGRIFYNQANMSAAGIPQIAVVMGSCTA
GGAYVPAMSDESVIVKGTGTIFLGGPPLVKAATGEVVSAEDLGGADVHCR
VSGVADHYATDDVHALEITRAIVASLNVPRSSTAAFSPSNKAQDAFEEPL
YSGQELGGLIPMDPKKPFDVRSVIGRVVDGSRFQEFKALYGPTIVTGFAR
IHGILTGIVANNGILFSESALKAAHFIELCSQRNIPLVFLQVGIPSSKPP
SPSLSPSFCSPFSPPSLAPFVVITAGVSSLFAALASFFLFPLHSSPSLPR
HLDP*

mRNA from alignment at chr19:3068..10880-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO19G00030.3 ID=NO19G00030.3|Name=NO19G00030.3|organism=Nannochloropsis oceanica|type=mRNA|length=7813bp|location=Sequence derived from alignment at chr19:3068..10880- (Nannochloropsis oceanica)
ATGCTGGCGGCTTGGCTCCGCACTGGGGCGGCAGCAAGGGCAGCGAGGGC
AGCACCAGCGGCATGGACATCCCCCCTCTTTCAGCTTCAGCATCAACGCC
TTGCCTTCGCCATCACACCTGCCTCATTGCGGGCACCGGCCTCCTCCTCT
TCCATTGCTTCTCGTAACATGCCTTTGTTTCCCGTACTACCTGACCCGGC
CGAGCCCTGGTCGGAGGACTTCAAGAGCAACAAGCTGGAAATGGATCACC
TTGTCTCCCAGCTTGACACCGTCGTGGAAGAGGTGAGTTGGCGATGCACA
TGGTCGCTCTACCCTAATCTCTCTCACATATTACGAAGCATGCTCTGTGC
TTATATTTGTCTGAAGCTCGACCATAGTATGTTCTCACACCCTCATCAAA
TCCCTCCATTTCTCTCTCACCTCCGTTTCCCCATCCGTCAGGTCCGTCAA
GGCGGAGGCCCCGTAGCCCGGGCGAAGCACGAGCAGCGGGGGAAGCTGTA
TGTAAGAGAGCGTATCGAACGGTTGGTGGACCCCGGGACGCCATTTTTGG
AGCTGTCGGCCTTGGCAGGACGGGATATGTACGGCAAGGAAAAGGTGCCA
GCCGGGGGCATCGTGACGGGTAAGCGTGTACCTAGAGGGAGGGAAGGAAG
GAGGGAGGGGGGGAAGGCGGGGGGGGGGAAAGAGGGGAGAAGGGGGGGCT
GATGAAGGGGAGGAGGGGCGGGTGGTGGCTTCATCCGTGTGAATATGGTC
AGACCAAGTGGCCGGGAGATTTCTAGTCTTGTAGGAGGCATAGCCCAACT
GCTATGCTGCCCACTCTTGTCACACTCCCTCTGCCCTTTCCGCCTCCTTC
TCCTTCTCACTCTCGGCTCGTCATTTGTCCCGCTACTTCTGTACAGGCAT
CGGGCGCGTAGCAGGTGTGGAGTGTATGCTGGTGGCCAACGACGCCACGG
TCAAGGGGGTGGGTGACGAGAGACTGAGAGGGAGGCGGTCGGGCAGGCGC
ACAGGAGGAAGCAAAGGGAGGAGACGATGAGAGAAGAGAAAGAGAAGAAC
ATAAAATGATTTGCAACCGATCTTCCTCGCTTCCTTCCTTCCTCCCCCCT
CCCCACCTTCCTGATCAGGGCACGTACTACCCCATCACCGTCAAGAAGCA
CCTTCGGGCCCAGGAGATCGCGGCTCAGAACCGGCTGCCCTGCATCTCCA
TGGTCGACTCCGGCGGCGCCTTCCTCCCCAAGCAGGATGAGGTCTTCCCC
GACCGAGGCACGTCGTATTTGCCTCTCTCTCTCCTTTCTTCTGTCCCTCC
CACACTCTCCTCCCTTACTCCCTCCTGCTGTCCGAAGGGGATGGGTGAAA
TCCTCCACTGCACGAAAGGCCCGTCTATCTTTCAACTGAAGCCCCCGATT
CACCTCCGTCCTTCTTTGCCTTCCTCGCTCCTTCCCCCCCCAGACCACTT
CGGACGCATTTTCTACAACCAGGCCAACATGTCGGCCGCCGGCATCCCCC
AAATCGCGGTCGTGATGGGGTCCTGCACTGCTGGAGGTAGCCGCCCCTCC
CTCCCTCCCTCCTTCCCTTCCTTCCTTCCCTCCTCCTTCCGTACGCTCAC
TATCGTCCTCACCCTCCCATACTCCTCCCTCGCACTCCTCTACGTCTCTT
CGTCTCTCCCTCCCTTTCTCCTTTCTCCGTAGGTGCCTATGTGCCCGCAA
TGTCAGACGAGAGTGTGATTGTCAAGGGCACGGGTACCATATTCCTGGGA
GGCCCGCCCCTGGTGAAGGCTGCGACAGGCGAAGTCGTCTCGGCCGAAGA
CTTGGGTAGGTGGAACGAGCGCGAGTGTGCGTCGTCTTCCTCCTCCCTGC
CTCTACATCATCGCATTCTTCCCTCCTTCGCCTTTGATCAATGATGCGGG
AAGAGGAGCTGTAAGAGGTTAAGACGAGCGACTGCGAACGAGTCTATGTC
TGGGTGTGCGTGCAGATCTATCTGTGTGTATCATGCTGACGTAGCCCTTG
TTTTTATCTTATAAATAATTTTCCGTCCTTTTCCTTCCCTCCCTCCCTCC
CTCCCCAGGCGGTGCCGACGTGCACTGTCGCGTCTCGGGCGTGGCGGACC
ACTACGCCACTGACGACGTCCATGCCCTCGAAATCACCAGGTAGAACCTC
CTTTTTCTCATTCCGTGGATCCTTTGTCTCTTCCATCCCCCGTTCCCTCT
CTCCTTCCTTTTCTCCCTCCCTATTCTCCCTCCCTCTCATTTTCTTTTCT
CCTTCCCTTCCTCTCTCCTTTTCTTCCGCTCTCCCTTCCATCCCCCTTTT
TTCCCGCCCTCCTTATTGGTCCAATTTCATCTCTCCCGCCCTCCCCCTCC
CTGTCCTTATTTATTGTATAGACCAGCGCAAATCTTACAACCTTGCTTCT
TCCCCCTTTCCCTTTCTCCCTTCCTTTCTCCCTTCCTTATCTCCCTCCAT
CATCTCTCTATTTCCCTTCTTCTTTCTTCTTCTTCGCCCAAATGCACAAG
AATTTCTCAAACCTTTCTCTCCTTCGCTCTTTCTTTTCCTCCCTCTCCTC
CTCCTACCCTTAGGGCCATCGTGGCCAGCTTAAATGTCCCGCGCTCCAGC
ACTGCGGCTTTCTCCCCGTCTAACAAGGCTCAAGGTAGCCAGACAGGGAG
GGAGAAAAGGAGGAAGGGAGGGAAGGACGAACGATGTATTCTTTTCGACT
CTTGTCTCTTGTTTCACCGAACAACCTCCGCTTGTCCATAACACTTCAAT
CCTGCCTCCTGTCGTCCCTCCTTTCCTCCCTCCCTGTTTCTTCCCCTTCT
CGAAGATGCTTTTAGGAAATCCCGGCATTCCACAGAAGCCGCGAGTCAGT
CCCACCATCCACACTCCCGCATAATAACTCTCCCCGTGGTACGCTCATTC
TTCCAATCGCGCACCCTTATCATCCTTTCTTTTCCCCTCTCCCCCGTACT
AGACGCCTTCGAAGAGCCGCTCTATTCCGGCCAGGAGCTGGGCGGGCTCA
TTCCGATGGACCCCAAAAAGCCTTTTGACGTCCGCAGTGTTATCGGGCGG
GTGGTGGACGGCTCTCGATTCCAGGAGTTCAAGGCACTGTATGGCCCCAC
CATCGTCACGGGCTTCGCGCGTATTCATGGCATTCTCACCGGTACTTCTC
TCCCTCTCCACTTCTATCCTTCCTTCTTTTTCTTCTTCCCTTTCCCCTCT
TTCTTTTTTTCTATAAAATAGTTTCTTGGCCCATTTCATCACTTTCACTA
TTGTTGATACTGGCGGTAAAAATATCTTTCTTTTCTCCCTCCCTCCCTCC
GTCCCTCCATCCTAGGCATCGTGGCCAACAACGGCATCTTATTCTCGGAG
TCTGCCCTCAAGGCCGCTCACTTCATAGAGCTCTGCTCCCAACGCAATAT
CCCTCTCGTCTTTCTCCAGGTAGGGATCCCTTCATCCAAACCTCCCTCCC
CCTCCCTTTCTCCTTCTTTCTGTTCCCCTTTCTCTCCTCCTTCACTCGCT
CCCTTCGTCGTAATCACAGCTGGCGTGTCATCCCTATTTGCTGCTCTTGC
TTCCTTTTTCCTTTTTCCCCTACATTCCTCTCCTTCATTGCCGAGACACC
TTGATCCATGATGAATATCTGCTTCCACACCTCGCTTTTTCGTTCGCATA
CTCCCCACCTAACCTTCACGAGCCTTGATTGTCGTTCCGAGTCCGATGAG
GCTCATCCGCCCTCCCTCTCCCTTTTTTGCTCTTTCCTTCCTTCCCCTCC
TCAGAACATCACGGGCTTCATGGTGGGTCGGAAGTACGAGAATGAGGGTA
TCGCCAAAAACGGGGCTAAGCTCGTCACAGCGGTCTCCACCTCCAAGGTA
GGCGCGCCCTCCCTCCCTCTTCTCTTCCTTCCCGTTTCCTCCGCCCCCCT
TCCTTCCCTCCTTTCTTTTCGCTCTCATCCTCATTGTACTTCTCTTTCTT
CCGGGGTAAGCGAACACTACCAGCCTTTACTTCTTTCCTCTCTGCACTCT
CTTCCTCATTCCTGCATTTTCCCCTCCGCGCAAGGATGTCAACTGCTTTT
CATCCTCGGCGCTTCCTTGTCCACCCTCCTCTCTTTTCTGTCCCTTCTCT
GCATCCTTGTGTGCGTGCTTTATTACGAAGTGAGCGATGCCGGAATGTGC
GGGCGACCTGGTCCTCCTCCACTGATTCTCTCGCTCTTTCCTCCCTCTCT
TCCTCGCTAATTTCCTCTCCCTAGGTCCCTAAGCTGACCCTTCTGATCGC
GGGCTCTTACGGTGCGGGCAACTATGGCATGTGCGGACGTGCCTTTTCCC
CTCGCTTTTTGTTTATGTGGCCAAACGCCAAGATCAGCGTGATGGGAGGG
GAGCAAGCTGCAAATGTACTAGCCACTGTTGCCGCTCAAGGAAAGGAATG
GACAGCAGAAGAAGGTGAGGGAGAAATGGGGGAAGGGCAGGGGGAGTGAT
TTCTGTTGATCCATGTTGTCCGACACGAGCATGAGAGAGCATCCAGTCAT
GAGGTGTGGGGGGTGAGACAGCAAGCTTTGCCCGCACTAGCGAAGAACTG
GACAGCGATCGAAGGTGAGAGAGACGGACGAGAGCGAAAGGGGTGGGAAA
TAGAGATGGGGTGGAACTCTTTCTGAAGCCCAGAACCAGTCGGAAATCAA
GAAGGATAACCATCAAGGTATCTATTTCTCTATTCTTCCCCGCCTCCCTC
AGTTTCGGTAGCTATCTTTGAGATCCAGTAACTGTCTTCAAGGCTTAGTA
CGCTCGTGAGTCTTATTGCTGACACTCTCTGCCCACATATTCTCTCCTGC
TCCTCTCCCTTTCTCTCTTCTTCCAAACTTCATAGAAACCGCTTTCAAGG
CTCCTATTCTAGAGAAATTCAACCGCGAATCTTCTTGCTACTACTCCTCG
GCGCGTCTGTGGGACGACGGCGTGATCCGACCCCAAGATACCCGCCAAGT
CCTGGGGCTGGCGTTGGCTGTGGCGGTAAAGGAGCAGATGGAAAAGACAA
GATTTGGAGTGTTTCGGATGTGAGCAGACGGAGAAGAACAAAAGTAATAG
AAGAATAACGGAGAGGGCATGATTGGCTTGTTATCTCGGCTGCATTGAAG
GAGGGCAGAAGAAGCGGGGATAGGGTCAGCGGGTATGATCACAGAAGAAG
AGATGGAAATCCATAGTAGCATGCAGAACGGATCAATTCCCATGTCCTAA
TTGTATAAGAGCAATCTTAGGGTTAATAGAGCAAAGGATATGAGGGAGGA
TAGCATAATCGGAGGAAAAGGTTATCCACTCAGGGTGTACATTCACTGGT
GCAATGTGTCAGGTTCGAGAGAGGAAGCGAGTACAAAAGAATTCAAAAAG
AGAGGGAAAGCAAAGATAGGTCAAGATAAGCACGCTGCTTGTATTAACGA
GGAATGTGATGAATAAAAGAGGGTACTTAATGATTAAAAAAGGAACTGAA
AGAAAAGATCATTCGATTGATCAAAGGAGGGTAGTGTCATATATCGGTTG
ATCAAAGTGGGTAAGTGTCATATAGGTAGTGTTAGGCCAATTTACGGGGT
AGTGTCATGTATTGGAGGAGGAGATCATCGACCAAGCTTCTTCTGTCGAC
CTTTAAATGAGGATTTCATCAAAGTCATCGAAAGGAATGCTTAAAACTCT
TGATCAGACTTCCCCTGTGTTGACTTGTTTATACCCTTCATTCACACTGT
CCTAAGTGTTAGGCCTATTTAGTGGTAAATAAGCCCCCTTGGAAGGGGCG
CTCAAGGAGCGCTGCAATGGGCGCGGAGCACTTCATATCCAAATTAGAAG
AAGAAAGTCCCTTCAAATGGAAATAAGCTATTCGATGCTGACTATCAAGC
CTTGTAGTATTGCTTCCTCATTTACATCACACTATATGTAGGAGGGGTGG
AACTTGGACCAAGTTCCTCCGTTCCGATCCTTCCACAACGCAACAAAGTC
AACCAAATAGCCAGATCTACTTCCAAGGAACACAATGTTTCTTTCTACGG
TATTTATGCATCCTTCTTCGAGGTCATCTTTGGTTTCTTCCTCGCTTCAT
CTGACCTCTTCTGCTTTCTCCTGACTTTCTCCGACCCCGACGTTTTCTTT
CTTTTCTTTTTTGGGGGGATCAAGCCAGTGTGTCCTGCAGGTGGTGTCAC
AAGCTCCATTGGTCCAGGGTAAAACGCTGATCCCGCAGACACTATTGTCT
CCAGCTGTGATGCTTCTGTGTTTTCTGCTATTTTTCTGGGACGTCTCTTC
ATTTTCGCTACTTTTTCTCATTCACTGTCATAATCGTCTTCTGCTTCTTG
CTGTCGTTGTACTTCTTCTGCTTCACTCTCTTGTTCTAGTTTCTCCGCCA
CATCGTATTGTCGTGTTTCCTCTTGCACTTCTTGCTCATCATCTTCTTCT
TCTTCTTGCTCATCATCTCTTTCTTCTTCTTGTTCTTGTTCTCCCACGTT
ATATTGACGTATTTCATTTTGTTCCCCGTATGCTTCCTCTCCTTCGTTTT
CCATCCTCCTGCGTTCTCTCATTTTTGGGGCTGCTTGCTCTTTTTCTTTC
TTGCCACTTCTTGTCTTCGTTTTCTTGCTGTGTTCTTTTTCCGTTTTCTT
GCTGCCTCTTTCTTAATATCCACCTTGTGTGCCTTGTTCAATGATTGAAA
AAGTCCATACCCGATGTTATTGCAGTCACACAGCTCTGTCATAGTATCTT
TATAGTGTCGGACCAGTTGTTTCATAGAACGCAACACCAAACGTAGCGCT
GTCTTATCATATTTCAACATCTTTCTCGAATTTTTTACCACTGCCTTCTC
GCTTGCAGTGATACACCTGGACAAGTACTCCACGGTCAATCGGTCTGGTT
CCACCTCCTTTTCCTGCTCTCCCTCCTCCTCTTCTTCATTAGCTGCACTC
TCCTCCTCATCATGATTTTCATCAGTATCCGTAGCTGACCGATCCGAGCC
CTCGTCTTCTGCGGCCCGTTCCGTGTTCTCACCAAGAAGCTCTTTCTGCA
ACCCAATTATTGTCATGAGCCCTGCACCAGGCAACGGTATTGATCGGACT
CTTTCCTCCGCCTCTGGCTTTCGTTCCTTCGCGTTCGCCCTCAACCTCAT
GGTCCTTATTGCCTCAGGCCATTCCGTGTCTTTCTTTCCTTCCACCCAAC
TTCTCAAAGTTGAACACAAACGCTTGGCCACCTCGGCTCCTTCCTTTTGT
GTCAAGGTCGTGCTTGTCAAATGTGGTTCAAGCGCCAACAAGTGTCGTCT
TAGCGTGACCATGTATTAAAAAAAAAATGGCCGAGATATAAGCCACTTTC
CTTCTCAGTTGCAAAGCATCCAAGGGGGCCTCACGGGTGAAAATCCCTAG
ATCGACGAATTCACCTCTTTTGCAGGCTTGGATGAAACTACCCAGTCCAG
ATTCAACCCATCTCTCAGCCAACACACTGTTCGCTTGTGGCGTCTTTGTG
GGTGTTTATATATGTGAGTGTTCGAGGCGGTGGGTGCGGATGCACATGGC
TGTCCATCCCCCCGACGCAATATCACTCTACCAGTACCTTGCATTCATCC
GCAGTTCCTTTCGCATGCAGTTCCTTGATCACAACGTTAGTACCATATCG
TAGCCTGGACGCATACTCCCGCACTGCTTTGGAAATTCGATCCCCAGACT
GAATTCTTCGGTCTCGGTCCGCCATCGATTCTTCTTCCGTCGGAGGGCGC
TTCACTCTGTTAGGATTCTGATGAGGTCCCATGGACTTGACTCAGGAACG
TTAGAATTCGGCGATGGTGACGATGACAAAGAAGTCCGCCACACGCTCAA
CAAAAAGCCCTGT

Coding sequence (CDS) from alignment at chr19:3068..10880-

>NO19G00030.3 ID=NO19G00030.3|Name=NO19G00030.3|organism=Nannochloropsis oceanica|type=CDS|length=1515bp|location=Sequence derived from alignment at chr19:3068..10880- (Nannochloropsis oceanica)
ATGCTGGCGGCTTGGCTCCGCACTGGGGCGGCAGCAAGGGCAGCGAGGGC
AGCACCAGCGGCATGGACATCCCCCCTCTTTCAGCTTCAGCATCAACGCC
TTGCCTTCGCCATCACACCTGCCTCATTGCGGGCACCGGCCTCCTCCTCT
TCCATTGCTTCTCGTAACATGCCTTTGTTTCCCGTACTACCTGACCCGGC
CGAGCCCTGGTCGGAGGACTTCAAGAGCAACAAGCTGGAAATGGATCACC
TTGTCTCCCAGCTTGACACCGTCGTGGAAGAGGTCCGTCAAGGCGGAGGC
CCCGTAGCCCGGGCGAAGCACGAGCAGCGGGGGAAGCTGTATGTAAGAGA
GCGTATCGAACGGTTGGTGGACCCCGGGACGCCATTTTTGGAGCTGTCGG
CCTTGGCAGGACGGGATATGTACGGCAAGGAAAAGGTGCCAGCCGGGGGC
ATCGTGACGGGCATCGGGCGCGTAGCAGGTGTGGAGTGTATGCTGGTGGC
CAACGACGCCACGGTCAAGGGGGGCACGTACTACCCCATCACCGTCAAGA
AGCACCTTCGGGCCCAGGAGATCGCGGCTCAGAACCGGCTGCCCTGCATC
TCCATGGTCGACTCCGGCGGCGCCTTCCTCCCCAAGCAGGATGAGGTCTT
CCCCGACCGAGACCACTTCGGACGCATTTTCTACAACCAGGCCAACATGT
CGGCCGCCGGCATCCCCCAAATCGCGGTCGTGATGGGGTCCTGCACTGCT
GGAGGTGCCTATGTGCCCGCAATGTCAGACGAGAGTGTGATTGTCAAGGG
CACGGGTACCATATTCCTGGGAGGCCCGCCCCTGGTGAAGGCTGCGACAG
GCGAAGTCGTCTCGGCCGAAGACTTGGGCGGTGCCGACGTGCACTGTCGC
GTCTCGGGCGTGGCGGACCACTACGCCACTGACGACGTCCATGCCCTCGA
AATCACCAGGGCCATCGTGGCCAGCTTAAATGTCCCGCGCTCCAGCACTG
CGGCTTTCTCCCCGTCTAACAAGGCTCAAGACGCCTTCGAAGAGCCGCTC
TATTCCGGCCAGGAGCTGGGCGGGCTCATTCCGATGGACCCCAAAAAGCC
TTTTGACGTCCGCAGTGTTATCGGGCGGGTGGTGGACGGCTCTCGATTCC
AGGAGTTCAAGGCACTGTATGGCCCCACCATCGTCACGGGCTTCGCGCGT
ATTCATGGCATTCTCACCGGCATCGTGGCCAACAACGGCATCTTATTCTC
GGAGTCTGCCCTCAAGGCCGCTCACTTCATAGAGCTCTGCTCCCAACGCA
ATATCCCTCTCGTCTTTCTCCAGGTAGGGATCCCTTCATCCAAACCTCCC
TCCCCCTCCCTTTCTCCTTCTTTCTGTTCCCCTTTCTCTCCTCCTTCACT
CGCTCCCTTCGTCGTAATCACAGCTGGCGTGTCATCCCTATTTGCTGCTC
TTGCTTCCTTTTTCCTTTTTCCCCTACATTCCTCTCCTTCATTGCCGAGA
CACCTTGATCCATGA

Synonyms

Publications