NO18G00520.1, NO18G00520.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G00520.1
Unique NameNO18G00520.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1278
Alignment locationchr18:213890..215593 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:213890..215593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO18G00520.1 vs.
Match: EWM23261.1 (hypothetical protein Naga_102012g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 72.4 bits (176), Expect = 2.500e-9
Identity = 60/126 (47.62%), Postives = 74/126 (58.73%), Query Frame = 0 
Query:    9 TAFVALLILSSAQAFVIPPSSLLPSL--PSLFRLHATTTTFSVEKGSSSSSSSSSSSSSTAATTALWRDIARLTHAAAPAPSTPSSLPSSSSSTYTTLNDSIFPPTRLARLLSLQRQHQHAAVEAE 133
            ++FV L  +    AF +P SSLLP    P +  L ATT    + K          +    AAT ALWRDIARL+   +  P  PSSL   SS T   LN++++PPTRLARLLSLQRQH HAAV+AE
Sbjct:   98 SSFVLLSSVHILYAFFLPSSSLLPLPFPPCILPLSATTAGTHLAK---------QNKGIQAATKALWRDIARLSKDPSTLPP-PSSL---SSPTPLVLNEALYPPTRLARLLSLQRQHDHAAVDAE 210
The following BLAST results are available for this feature:
BLAST of NO18G00520.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23261.12.500e-947.62hypothetical protein Naga_102012g1, partial [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G00520NO18G00520Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G00520.1NO18G00520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G00520.1.cds1NO18G00520.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00520.1.cds2NO18G00520.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G00520.1 ID=NO18G00520.1|Name=NO18G00520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1278bp
CACAGGCAGGAGCGGGCAATGCAGGAGTAGCAACTATACTCAGGAGCAGC
GACAACGAAACCGATAGCACCAGGCCAAAATGACGAGAAGAGGTGGAGGA
GGGAGGAGGGAAGGGAGGGAGGGGAGGGAGGGGGGAGGGGTGTCTGCTCC
CTGCTTCTAACACCACATGTCTCCACACGCACATGCATACACAGCCTTTG
TCGCATTACTCATTCTCAGCTCCGCTCAAGCCTTCGTCATTCCCCCTTCC
TCCCTCCTGCCCTCCCTTCCCTCCCTATTCCGCCTCCATGCCACCACCAC
AACTTTCTCCGTGGAGAAGGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCACCGCGGCGACTACCGCTCTCTGGCGTGATATTGCCCGG
CTTACCCACGCTGCTGCTCCGGCTCCCTCCACCCCTTCCTCCCTCCCGTC
CTCGTCCTCTTCCACGTACACTACCCTCAACGACTCCATCTTTCCTCCCA
CGCGTCTTGCCCGCCTCCTCTCCTTACAGCGCCAGCACCAACACGCGGCC
GTGGAAGCCGAGATGGACCACATCCATGCCCTGGCCCGTGCCCTCTTCCC
TTCCCCCAACGATTACAGACAACCGAAAAAGACCCAGTCCGACAAGGACA
AAAGCCAGAGAGGAGAAGGGAGGGGAGGAAGACGGGGAAGAGGAGGAAGT
GGTGCGCCGTCATTGCTAGTGACGTCACGCAAGCCCCCGGCGAATGAAGC
GGAGCGTTTGGCGGCAGTGGCGCTGGGCTTATTCCTCGAAATGGCCTCGA
CGAGGAAGGGCCCCCCCCTCCCTCCAGACTCCTGGTGCTACTCCTCTGTC
ATCTCCTGCCTCCTCTCAGTAGACAAGCCTCACCTCGCCCTACTCATCCT
CTCCAAAGCACTTAACGACGGCGCGTCCCTCCCCCCCCCTCCCGTCCCTC
CAACTCTCCCTCCCCAGCGCCCTCCCTCCGGCCCGGCCTGGAGAGTGGAG
TGAAGGAGGTCCTGGCCTCGGCTGTGGCGTCCCTCGAGGAGAAAGGCATG
GATACCTTGGGAGACATCGTGTGGAGGGAGGGAAGGAGGAAGGGGTGGGT
GGAGGACTGCTGGAGCGATGTTCATCCAGGCGTGATGGATCTGCACAACA
GGACGTTACCGGTGGCTCGGGCGGCCGTTAGATACGTTTATGAAACCGCC
CTGAGGGAGTGGAAGGGGGAGGGGGGAAAGAGAGGGAAGGAGGGAGGGAA
GGAGGGAGGGAAGGAGGGAGGGNNNNNN
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protein sequence of NO18G00520.1

>NO18G00520.1-protein ID=NO18G00520.1-protein|Name=NO18G00520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MSPHAHAYTAFVALLILSSAQAFVIPPSSLLPSLPSLFRLHATTTTFSVE
KGSSSSSSSSSSSSSTAATTALWRDIARLTHAAAPAPSTPSSLPSSSSST
YTTLNDSIFPPTRLARLLSLQRQHQHAAVEAEMDHIHALARALFPSPNDY
RQPKKTQSDKDKSQRGEGRGGRRGRGGSGAPSLLVTSRKPPANEAERLAA
VALGLFLEMASTRKGPPLPPDSWCYSSVISCLLSVDKPHLALLILSKALN
DGASLPPPPVPPTLPPQRPPSGPAWRVE*
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mRNA from alignment at chr18:213890..215593+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G00520.1 ID=NO18G00520.1|Name=NO18G00520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1704bp|location=Sequence derived from alignment at chr18:213890..215593+ (Nannochloropsis oceanica)
CACAGGCAGGAGCGGGCAATGCAGGAGTAGCAACTATACTCAGGAGCAGC
GACAACGAAACCGATAGCACCAGGCCAAAATGACGAGAAGAGGTGGAGGA
GGGAGGAGGGAAGGGAGGGAGGGGAGGGAGGGGGGAGGGGTGTCTGCTCC
CTGCTTCTAACACCACATGTCTCCACACGCACATGCATACACAGCCTTTG
TCGCATTACTCATTCTCAGCTCCGCTCAAGCCTTCGTCATTCCCCCTTCC
TCCCTCCTGCCCTCCCTTCCCTCCCTATTCCGCCTCCATGCCACCACCAC
AACTTTCTCCGTGGAGAAGGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCACCGCGGCGACTACCGCTCTCTGGCGTGATATTGCCCGG
CTTACCCACGCTGCTGCTCCGGCTCCCTCCACCCCTTCCTCCCTCCCGTC
CTCGTCCTCTTCCACGTACACTACCCTCAACGACTCCATCTTTCCTCCCA
CGCGTCTTGCCCGCCTCCTCTCCTTACAGCGCCAGCACCAACACGCGGCC
GTGGAAGCCGAGATGGACCACATCCATGCCCTGGCCCGTGCCCTCTTCCC
TTCCCCCAACGATTACAGACAACCGAAAAAGACCCAGTCCGACAAGGACA
AAAGCCAGAGAGGAGAAGGGAGGGGAGGAAGACGGGGAAGAGGAGGAAGT
GGTGCGCCGTCATTGCTAGTGACGTCACGCAAGCCCCCGGCGAATGAAGC
GGAGCGTTTGGCGGCAGTGGCGCTGGGCTTATTCCTCGAAATGGCCTCGA
CGAGGAAGGGGTGAGGAGGAGGGAGGGAGGGAGGGAGGACGGGCGGGCAG
GAGGGTGGGGCCGGGCGGGTTGACATGCATGCTTTTATTTCACTCGATAT
TATGGGATTGCCATCATTCACTTCGTACCCCTATCTGTCTATCCCATTAT
TACTGCCCCTCGCCCTTCCTCTACCTCCCGCTAATGTGACCTTCGGCCTC
CTCCCCTCACACACACCCCTCCCTCCTTCCCTCCCTCCCCTTCTCCCAGC
CCCCCCCTCCCTCCAGACTCCTGGTGCTACTCCTCTGTCATCTCCTGCCT
CCTCTCAGTAGACAAGCCTCACCTCGCCCTACTCATCCTCTCCAAAGCAC
TTAACGACGGCGCGTCCCTCCCCCCCCCTCCCGTCCCTCCAACTCTCCCT
CCCCAGCGCCCTCCCTCCGGCCCGGCCTGGAGAGTGGAGTGAAGGAGGTC
CTGGCCTCGGCTGTGGCGTCCCTCGAGGAGAAAGGCATGGATACCTTGGG
AGACATCGTGTGGAGGGAGGGAAGGAGGAAGGGGTGGGTGGAGGACTGCT
GGAGCGATGGTAAGCAATTTTCTCTTTTTCCTCCCCCTCCCTCCCCCCCT
CCGTCCTTGCCTACTCCGTCCTTGCCCCCCTCTCTCCTTCCCTCCATTCG
TCTCTTGCGCATTGTGCCCTTCAAAGTAACACCTATACGCCCCACTTTCC
AACACCTCTCTCCCTCCCTCCCCCCTCCCTCCCTCCCTCGCTTAAGTTCA
TCCAGGCGTGATGGATCTGCACAACAGGACGTTACCGGTGGCTCGGGCGG
CCGTTAGATACGTTTATGAAACCGCCCTGAGGGAGTGGAAGGGGGAGGGG
GGAAAGAGAGGGAAGGAGGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGNN
NNNN
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Coding sequence (CDS) from alignment at chr18:213890..215593+

>NO18G00520.1 ID=NO18G00520.1|Name=NO18G00520.1|organism=Nannochloropsis oceanica|type=CDS|length=837bp|location=Sequence derived from alignment at chr18:213890..215593+ (Nannochloropsis oceanica)
ATGTCTCCACACGCACATGCATACACAGCCTTTGTCGCATTACTCATTCT
CAGCTCCGCTCAAGCCTTCGTCATTCCCCCTTCCTCCCTCCTGCCCTCCC
TTCCCTCCCTATTCCGCCTCCATGCCACCACCACAACTTTCTCCGTGGAG
AAGGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCGC
GGCGACTACCGCTCTCTGGCGTGATATTGCCCGGCTTACCCACGCTGCTG
CTCCGGCTCCCTCCACCCCTTCCTCCCTCCCGTCCTCGTCCTCTTCCACG
TACACTACCCTCAACGACTCCATCTTTCCTCCCACGCGTCTTGCCCGCCT
CCTCTCCTTACAGCGCCAGCACCAACACGCGGCCGTGGAAGCCGAGATGG
ACCACATCCATGCCCTGGCCCGTGCCCTCTTCCCTTCCCCCAACGATTAC
AGACAACCGAAAAAGACCCAGTCCGACAAGGACAAAAGCCAGAGAGGAGA
AGGGAGGGGAGGAAGACGGGGAAGAGGAGGAAGTGGTGCGCCGTCATTGC
TAGTGACGTCACGCAAGCCCCCGGCGAATGAAGCGGAGCGTTTGGCGGCA
GTGGCGCTGGGCTTATTCCTCGAAATGGCCTCGACGAGGAAGGGCCCCCC
CCTCCCTCCAGACTCCTGGTGCTACTCCTCTGTCATCTCCTGCCTCCTCT
CAGTAGACAAGCCTCACCTCGCCCTACTCATCCTCTCCAAAGCACTTAAC
GACGGCGCGTCCCTCCCCCCCCCTCCCGTCCCTCCAACTCTCCCTCCCCA
GCGCCCTCCCTCCGGCCCGGCCTGGAGAGTGGAGTGA
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Synonyms
Publications