NO17G01990.1, NO17G01990.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G01990.1
Unique NameNO17G01990.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length435
Alignment locationchr17:569376..569810 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:569376..569810 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G01990.1 vs.
Match: EWM29045.1 (importin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 216.9 bits (551), Expect = 4.300e-53
Identity = 109/144 (75.69%), Postives = 123/144 (85.42%), Query Frame = 0 
Query:    1 MAVVLVGRIVDIRHESWQSMPAALKAAVRQGLWHNFTHETDPELVRKLSHAVARASEGWKDLVAASIGLLGSTNDQARQVGVFFLLEQMSEYSDELKSDPGRLLPVFQAALVDDMTLSVRCGALKALLSLLNHIETRAAVINGG 145
            + VVLVGRIVD+R E+WQ+M  + K AVRQGLWHNFT E+DPELVRKLSHAVARASEGW DLVAAS+ LLG TND+ARQVGVFFLLEQMSEYSDEL+SDP RLLPVFQAAL + + L+V+C ALKAL SLL  IET A+V  GG
Sbjct:   93 ITVVLVGRIVDVRLETWQNMDPSAKTAVRQGLWHNFTLESDPELVRKLSHAVARASEGWVDLVAASLALLGGTNDEARQVGVFFLLEQMSEYSDELRSDPARLLPVFQAALGEGVPLNVQCAALKALFSLLASIETLASVARGG 236
The following BLAST results are available for this feature:
BLAST of NO17G01990.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29045.14.300e-5375.69importin-like protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G01990NO17G01990Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G01990.1NO17G01990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G01990.1.cds1NO17G01990.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G01990.1 ID=NO17G01990.1|Name=NO17G01990.1|organism=Nannochloropsis oceanica|type=mRNA|length=435bp
ATGGCCGTGGTCCTGGTCGGACGCATCGTCGACATCCGTCACGAATCCTG
GCAGTCCATGCCGGCCGCCCTCAAGGCCGCCGTCAGGCAAGGCCTCTGGC
ACAACTTCACGCACGAAACCGACCCGGAGCTCGTTCGCAAGCTTTCACAT
GCCGTAGCCCGCGCATCGGAGGGGTGGAAGGATTTGGTCGCGGCATCCAT
TGGTCTGTTGGGGAGCACCAACGACCAGGCCCGGCAAGTGGGAGTATTTT
TCCTCCTGGAGCAGATGTCCGAATACAGCGACGAGCTTAAGAGCGACCCT
GGTCGGCTTCTGCCTGTCTTTCAAGCGGCACTTGTGGATGATATGACCCT
GTCAGTGCGATGCGGGGCGCTCAAGGCATTGTTATCGTTGTTGAATCACA
TAGAGACCAGGGCGGCTGTCATTAATGGGGGGTGA
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protein sequence of NO17G01990.1

>NO17G01990.1-protein ID=NO17G01990.1-protein|Name=NO17G01990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=145bp
MAVVLVGRIVDIRHESWQSMPAALKAAVRQGLWHNFTHETDPELVRKLSH
AVARASEGWKDLVAASIGLLGSTNDQARQVGVFFLLEQMSEYSDELKSDP
GRLLPVFQAALVDDMTLSVRCGALKALLSLLNHIETRAAVINGG*
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mRNA from alignment at chr17:569376..569810+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G01990.1 ID=NO17G01990.1|Name=NO17G01990.1|organism=Nannochloropsis oceanica|type=mRNA|length=435bp|location=Sequence derived from alignment at chr17:569376..569810+ (Nannochloropsis oceanica)
ATGGCCGTGGTCCTGGTCGGACGCATCGTCGACATCCGTCACGAATCCTG
GCAGTCCATGCCGGCCGCCCTCAAGGCCGCCGTCAGGCAAGGCCTCTGGC
ACAACTTCACGCACGAAACCGACCCGGAGCTCGTTCGCAAGCTTTCACAT
GCCGTAGCCCGCGCATCGGAGGGGTGGAAGGATTTGGTCGCGGCATCCAT
TGGTCTGTTGGGGAGCACCAACGACCAGGCCCGGCAAGTGGGAGTATTTT
TCCTCCTGGAGCAGATGTCCGAATACAGCGACGAGCTTAAGAGCGACCCT
GGTCGGCTTCTGCCTGTCTTTCAAGCGGCACTTGTGGATGATATGACCCT
GTCAGTGCGATGCGGGGCGCTCAAGGCATTGTTATCGTTGTTGAATCACA
TAGAGACCAGGGCGGCTGTCATTAATGGGGGGTGA
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Coding sequence (CDS) from alignment at chr17:569376..569810+

>NO17G01990.1 ID=NO17G01990.1|Name=NO17G01990.1|organism=Nannochloropsis oceanica|type=CDS|length=435bp|location=Sequence derived from alignment at chr17:569376..569810+ (Nannochloropsis oceanica)
ATGGCCGTGGTCCTGGTCGGACGCATCGTCGACATCCGTCACGAATCCTG
GCAGTCCATGCCGGCCGCCCTCAAGGCCGCCGTCAGGCAAGGCCTCTGGC
ACAACTTCACGCACGAAACCGACCCGGAGCTCGTTCGCAAGCTTTCACAT
GCCGTAGCCCGCGCATCGGAGGGGTGGAAGGATTTGGTCGCGGCATCCAT
TGGTCTGTTGGGGAGCACCAACGACCAGGCCCGGCAAGTGGGAGTATTTT
TCCTCCTGGAGCAGATGTCCGAATACAGCGACGAGCTTAAGAGCGACCCT
GGTCGGCTTCTGCCTGTCTTTCAAGCGGCACTTGTGGATGATATGACCCT
GTCAGTGCGATGCGGGGCGCTCAAGGCATTGTTATCGTTGTTGAATCACA
TAGAGACCAGGGCGGCTGTCATTAATGGGGGGTGA
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Synonyms
Publications