NO15G03390.1, NO15G03390.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G03390.1
Unique NameNO15G03390.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length531
Alignment locationchr15:982774..983304 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:982774..983304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G03390.1 vs.
Match: EWM22245.1 (NAD(P)-binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 101.3 bits (251), Expect = 3.200e-18
Identity = 58/114 (50.88%), Postives = 68/114 (59.65%), Query Frame = 0 
Query:   50 PSASSFSSSS--SSSSVSPPSRAVQSMNDDALWPYKILFRREGRPDLVPLEPKLHRLAAIVFVAVASLLGVGLGAGLWKMGEEAARWMRAGKTPPRGLVSAMEKGSPWR-DGIG 161
            PS+ S SSS    S +  P     + MN+D LW YKIL RREGRPD+ PL PKLHRL   +FV   S LGVGLGAGLWK G    RW+R    PP+  + A  +G  W   GIG
Sbjct:  369 PSSKSTSSSGPLDSKAAFPAPGPSRGMNNDPLWSYKILLRREGRPDVTPLSPKLHRLGVCIFVTAVSSLGVGLGAGLWKGGHALGRWLRQRALPPQEGIPATMRGGCWSLAGIG 482
The following BLAST results are available for this feature:
BLAST of NO15G03390.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22245.13.200e-1850.88NAD(P)-binding domain protein [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G03390NO15G03390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G03390.1NO15G03390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G03390.1.cds1NO15G03390.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G03390.1 ID=NO15G03390.1|Name=NO15G03390.1|organism=Nannochloropsis oceanica|type=mRNA|length=531bp
ATGACTCTGTCAGTTGCGGGGGTGGGGACGAAGGAGGAAAAGAGGCGGAG
GAAGAAAGATGAGAGGGTAATGATGAAGAGCATTGACGGCCCGGCGACCA
TGGGTATCGAAACCCGGCGTAGCAGCACCCTCGACAAGAACGGCAAACCC
TCCGCCTCCTCATTTTCCTCCTCCTCCTCGTCCTCCTCCGTCTCTCCACC
TTCACGTGCCGTCCAGAGCATGAACGACGACGCCCTGTGGCCTTATAAGA
TCCTCTTCCGCCGTGAAGGGCGACCGGACCTCGTCCCCCTTGAACCCAAG
CTCCATCGTCTGGCCGCAATAGTCTTCGTGGCGGTCGCGTCCCTCTTGGG
GGTGGGTCTAGGGGCAGGCCTGTGGAAGATGGGAGAGGAGGCAGCGCGAT
GGATGAGAGCAGGGAAGACACCACCAAGAGGGTTGGTTTCGGCGATGGAG
AAGGGTAGCCCTTGGAGAGATGGGATAGGAAGAGGGGGTGGAGAAGGAGG
AAGAGGGGTGGAAGGGTGGAAAAATATGTAA
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protein sequence of NO15G03390.1

>NO15G03390.1-protein ID=NO15G03390.1-protein|Name=NO15G03390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=177bp
MTLSVAGVGTKEEKRRRKKDERVMMKSIDGPATMGIETRRSSTLDKNGKP
SASSFSSSSSSSSVSPPSRAVQSMNDDALWPYKILFRREGRPDLVPLEPK
LHRLAAIVFVAVASLLGVGLGAGLWKMGEEAARWMRAGKTPPRGLVSAME
KGSPWRDGIGRGGGEGGRGVEGWKNM*
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mRNA from alignment at chr15:982774..983304+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G03390.1 ID=NO15G03390.1|Name=NO15G03390.1|organism=Nannochloropsis oceanica|type=mRNA|length=531bp|location=Sequence derived from alignment at chr15:982774..983304+ (Nannochloropsis oceanica)
ATGACTCTGTCAGTTGCGGGGGTGGGGACGAAGGAGGAAAAGAGGCGGAG
GAAGAAAGATGAGAGGGTAATGATGAAGAGCATTGACGGCCCGGCGACCA
TGGGTATCGAAACCCGGCGTAGCAGCACCCTCGACAAGAACGGCAAACCC
TCCGCCTCCTCATTTTCCTCCTCCTCCTCGTCCTCCTCCGTCTCTCCACC
TTCACGTGCCGTCCAGAGCATGAACGACGACGCCCTGTGGCCTTATAAGA
TCCTCTTCCGCCGTGAAGGGCGACCGGACCTCGTCCCCCTTGAACCCAAG
CTCCATCGTCTGGCCGCAATAGTCTTCGTGGCGGTCGCGTCCCTCTTGGG
GGTGGGTCTAGGGGCAGGCCTGTGGAAGATGGGAGAGGAGGCAGCGCGAT
GGATGAGAGCAGGGAAGACACCACCAAGAGGGTTGGTTTCGGCGATGGAG
AAGGGTAGCCCTTGGAGAGATGGGATAGGAAGAGGGGGTGGAGAAGGAGG
AAGAGGGGTGGAAGGGTGGAAAAATATGTAA
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Coding sequence (CDS) from alignment at chr15:982774..983304+

>NO15G03390.1 ID=NO15G03390.1|Name=NO15G03390.1|organism=Nannochloropsis oceanica|type=CDS|length=531bp|location=Sequence derived from alignment at chr15:982774..983304+ (Nannochloropsis oceanica)
ATGACTCTGTCAGTTGCGGGGGTGGGGACGAAGGAGGAAAAGAGGCGGAG
GAAGAAAGATGAGAGGGTAATGATGAAGAGCATTGACGGCCCGGCGACCA
TGGGTATCGAAACCCGGCGTAGCAGCACCCTCGACAAGAACGGCAAACCC
TCCGCCTCCTCATTTTCCTCCTCCTCCTCGTCCTCCTCCGTCTCTCCACC
TTCACGTGCCGTCCAGAGCATGAACGACGACGCCCTGTGGCCTTATAAGA
TCCTCTTCCGCCGTGAAGGGCGACCGGACCTCGTCCCCCTTGAACCCAAG
CTCCATCGTCTGGCCGCAATAGTCTTCGTGGCGGTCGCGTCCCTCTTGGG
GGTGGGTCTAGGGGCAGGCCTGTGGAAGATGGGAGAGGAGGCAGCGCGAT
GGATGAGAGCAGGGAAGACACCACCAAGAGGGTTGGTTTCGGCGATGGAG
AAGGGTAGCCCTTGGAGAGATGGGATAGGAAGAGGGGGTGGAGAAGGAGG
AAGAGGGGTGGAAGGGTGGAAAAATATGTAA
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Synonyms
Publications