NO15G02130.1, NO15G02130.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G02130.1
Unique NameNO15G02130.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length699
Alignment locationchr15:597050..598047 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:597050..598047 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO15G02130.1 vs.
Match: EWM22365.1 (hypothetical protein Naga_100066g6 [Nannochloropsis gaditana])

HSP 1 Score: 303.9 bits (777), Expect = 4.300e-79
Identity = 155/215 (72.09%), Postives = 179/215 (83.26%), Query Frame = 0 
Query:    2 PHPTPSGSVLVGLGVFLLSSLLCTSACFFVANEYVHHATVVRVEKDPNYQELRAFDDEEEEGGSEGAWGGARRGP--GRGSSPIDSVYVRGGGIESDIWDPIPRITVIERSRFLIIFSKLIRAMLVLAVGWLVLVAVAVLLYTPQMPDVNVCNTALDWGSIFSGFEKLKLEADYQLLLSVYNPNRLDVAITSGQGVFKHDHEPIGQVEISPFVIK 215
            PHP PSGSVLVGLG+FLL+SL CTSACFFVANEYV HATVVR+EKDPNYQEL AFD+EEE     G  G +R GP  G G   +     +G G E D+WDP+PRI V ERSRFL++ S++IRA L+L + WLV+VAVAV LYTPQ+PDVNVCNTALDWGS+F+G E+LKLEADYQLLLSVYNPNRLDVAI+SGQGVFKHDHE IGQVE++PF+IK
Sbjct:  131 PHPAPSGSVLVGLGIFLLTSLFCTSACFFVANEYVKHATVVRMEKDPNYQELLAFDEEEE-----GLAGRSRSGPSKGGGEGVLGERRPQGSGGE-DVWDPVPRIRVEERSRFLVVCSQVIRAALILTLAWLVMVAVAVFLYTPQVPDVNVCNTALDWGSLFTGLERLKLEADYQLLLSVYNPNRLDVAISSGQGVFKHDHEAIGQVEVAPFLIK 339
The following BLAST results are available for this feature:
BLAST of NO15G02130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22365.14.300e-7972.09hypothetical protein Naga_100066g6 [Nannochloropsi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G02130NO15G02130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G02130.1NO15G02130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G02130.1.cds1NO15G02130.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G02130.1.cds2NO15G02130.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G02130.1.cds3NO15G02130.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G02130.1 ID=NO15G02130.1|Name=NO15G02130.1|organism=Nannochloropsis oceanica|type=mRNA|length=699bp
ATGCCCCATCCTACCCCTTCTGGCTCGGTGTTGGTGGGGTTAGGCGTCTT
CCTCCTATCCTCACTCCTTTGCACAAGTGCTTGTTTTTTTGTGGCAAATG
AGTACGTGCATCACGCTACGGTGGTCCGCGTGGAGAAAGATCCAAATTAC
CAGGAATTGCGGGCGTTTGATGACGAGGAGGAGGAGGGAGGGAGTGAAGG
AGCATGGGGCGGAGCTCGACGAGGGCCTGGAAGGGGCAGCAGCCCCATCG
ATAGCGTCTATGTACGAGGAGGAGGCATCGAGAGCGATATATGGGACCCT
ATCCCGAGAATAACAGTGATTGAACGCTCTCGGTTTTTGATAATATTTTC
AAAGCTCATTCGAGCCATGCTTGTTCTGGCCGTGGGGTGGCTAGTGCTGG
TGGCAGTGGCTGTGTTGCTGTATACTCCACAGATGCCCGATGTGAATGTG
TGTAATACGGCCTTGGATTGGGGCTCGATCTTCTCGGGCTTCGAAAAGTT
GAAACTGGAGGCCGACTATCAATTATTGCTGTCCGTTTACAACCCTAACA
GGCTCGACGTCGCCATCACTTCAGGGCAAGGCGTCTTTAAGCACGACCAT
GAGCCAATCGGGCAAGTCGAAATCTCCCCCTTTGTAATCAAAGAACTATT
TTATTCATGTGGGTACGGAGACGACGAGTGGTCCCAGACATTTGTGTAA
back to top

protein sequence of NO15G02130.1

>NO15G02130.1-protein ID=NO15G02130.1-protein|Name=NO15G02130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp
MPHPTPSGSVLVGLGVFLLSSLLCTSACFFVANEYVHHATVVRVEKDPNY
QELRAFDDEEEEGGSEGAWGGARRGPGRGSSPIDSVYVRGGGIESDIWDP
IPRITVIERSRFLIIFSKLIRAMLVLAVGWLVLVAVAVLLYTPQMPDVNV
CNTALDWGSIFSGFEKLKLEADYQLLLSVYNPNRLDVAITSGQGVFKHDH
EPIGQVEISPFVIKELFYSCGYGDDEWSQTFV*
back to top

mRNA from alignment at chr15:597050..598047+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G02130.1 ID=NO15G02130.1|Name=NO15G02130.1|organism=Nannochloropsis oceanica|type=mRNA|length=998bp|location=Sequence derived from alignment at chr15:597050..598047+ (Nannochloropsis oceanica)
ATGCCCCATCCTACCCCTTCTGGCTCGGTGTTGGTGGGGTTAGGCGTCTT
CCTCCTATCCTCACTCCTTTGCACAAGTGCTTGTTTTTTTGTGGCAAATG
AGTACGTGCATCACGCTACGGTGGTCCGCGTGGAGAAAGATCCAAATTAC
CAGGAATTGCGGGCGTTTGATGACGAGGAGGAGGAGGGAGGGAGTGAAGG
AGCATGGGGCGGAGCTCGACGAGGGCCTGGAAGGGGCAGCAGCCCCATCG
ATAGCGTCTATGTACGAGGAGGAGGCATCGAGAGCGATATATGGGACCCT
ATCCCGAGAATAACAGTGATTGAACGCTCTCGGTTTTTGATAATATTTTC
AAAGCTCATTCGAGCCATGCTTGTTCTGGCCGTGGGGTGGCTAGTGCTGG
TGGCAGTGGCTGTGTTGCTGTATACTCCACAGATGCCCGATGTGAATGTG
TGTAATACGGCCTTGGATTGGGGCTCGATCTTCTCGGGCTTCGAAAAGTT
GAAACTGGAGGCCGACTATCAATTATTGCTGTCCGTGTAAGTATTTTTTT
TATTGATTATTCAACTAACTAACGAATTAACAAATTGATTGCCCTAGTTG
ATCATTAGTTCATTCATGTCTGAACTGATTGTTCCTCTATTCCTCTCTCT
CGCCCTCAGTTACAACCCTAACAGGCTCGACGTCGCCATCACTTCAGGGC
AAGGCGTCTTTAAGCACGACCATGAGCCAATCGGGCAAGTCGAAATCTCC
CCCTTTGTAATCAAAGGTGGGGCAATCACTGATGTTCTTGTCACTTTAGT
CTTCACCCCTTCCGTGTGGAAAAGCCTCCAATTAGACTTGGCCTTTCAAA
CAGGCTCGTTAATGGTTATGGTGGATGTAAATGTTGCCGGTAGAGTGATA
TGGAAGAAGAGAAGGTTGTTTCCATTCGCCTACAATCTACAGAACTATTT
TATTCATGTGGGTACGGAGACGACGAGTGGTCCCAGACATTTGTGTAA
back to top

Coding sequence (CDS) from alignment at chr15:597050..598047+

>NO15G02130.1 ID=NO15G02130.1|Name=NO15G02130.1|organism=Nannochloropsis oceanica|type=CDS|length=699bp|location=Sequence derived from alignment at chr15:597050..598047+ (Nannochloropsis oceanica)
ATGCCCCATCCTACCCCTTCTGGCTCGGTGTTGGTGGGGTTAGGCGTCTT
CCTCCTATCCTCACTCCTTTGCACAAGTGCTTGTTTTTTTGTGGCAAATG
AGTACGTGCATCACGCTACGGTGGTCCGCGTGGAGAAAGATCCAAATTAC
CAGGAATTGCGGGCGTTTGATGACGAGGAGGAGGAGGGAGGGAGTGAAGG
AGCATGGGGCGGAGCTCGACGAGGGCCTGGAAGGGGCAGCAGCCCCATCG
ATAGCGTCTATGTACGAGGAGGAGGCATCGAGAGCGATATATGGGACCCT
ATCCCGAGAATAACAGTGATTGAACGCTCTCGGTTTTTGATAATATTTTC
AAAGCTCATTCGAGCCATGCTTGTTCTGGCCGTGGGGTGGCTAGTGCTGG
TGGCAGTGGCTGTGTTGCTGTATACTCCACAGATGCCCGATGTGAATGTG
TGTAATACGGCCTTGGATTGGGGCTCGATCTTCTCGGGCTTCGAAAAGTT
GAAACTGGAGGCCGACTATCAATTATTGCTGTCCGTTTACAACCCTAACA
GGCTCGACGTCGCCATCACTTCAGGGCAAGGCGTCTTTAAGCACGACCAT
GAGCCAATCGGGCAAGTCGAAATCTCCCCCTTTGTAATCAAAGAACTATT
TTATTCATGTGGGTACGGAGACGACGAGTGGTCCCAGACATTTGTGTAA
back to top
Synonyms
Publications