NO15G01910.1, NO15G01910.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G01910.1
Unique NameNO15G01910.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1474
Alignment locationchr15:535615..537256 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:535615..537256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G01910.1 vs.
Match: EWM22411.1 (4-phosphopantetheinyl transferase entd [Nannochloropsis gaditana])

HSP 1 Score: 331.6 bits (849), Expect = 3.200e-87
Identity = 214/401 (53.37%), Postives = 262/401 (65.34%), Query Frame = 0 
Query:    1 MTPVVLRPPASLVVMVLY------SVVAAGRTWSYHQASCAVFSSRRALQTAAFI-CGTRSAPSSVRRREQQPWHASLPFSSSSHSSS--SSIPLRSTSTSTIQSAAI---------LKAEQLFPTSFEMDIPPMGHVLGLRLPLPSSSSATNHHDTPHSSDDTELDLSLLVDGK----------KESDLLHPKELQLALEMSNIEARLAFVGGRLALRRNLRSLPRPASIEQAVLREEGGAPSLPPHVQASISHKKDLAVCLLRGVREEEEGEKIASSHIGVDVEVCEPRTRTSSIATRVLTLKERNGLGALKSVGISAESEILLRFSFKESVYKAIHPFVRRYVAFHEAEVTPRVDGTCAIVLLLTGGEEEEGGFEVKGEWRRVEGGRFFLTAVAVTKV 374
            MTP + RPP +L V+VL       S+V A  +WS    +          Q AAF+ C +R   S   R  +QP  +S  F+S +  S   S++P  S   +T+ S +          L AEQLFPTSFE+D+PPMGHVL LRLP+ S S             D E DLS+L+D            K   LLHPKEL LA+ MSN+++RLAF+GGRLALRR+LR LP+P  IEQAVLR+E GAP+LP HVQASISHK+DLA+CLLR V   EE    A S+IGVD+E+C+PR  T+SIATRVLT +E++ LG L S+GIS ESE+LLRFS KESVYKAI+PF+RRYVAF EAEVTP VDGT  IVL L GG   EG FE +G WR+V+ GRFFLTAV V KV
Sbjct:    1 MTPALRRPPPTLSVIVLLLHMGLISMVKARGSWSRSLTARVEVKEAFRDQNAAFVDCHSRVRLS---RPTRQPGASSYYFTSVTSKSMYPSTVPPCSICLNTVVSTSRASDICFDGRLTAEQLFPTSFELDMPPMGHVLALRLPVSSVSQ----------DPDREWDLSILLDSSTMDTVSRSAAKFPTLLHPKELDLAMNMSNLDSRLAFLGGRLALRRSLRKLPQPIRIEQAVLRDEKGAPALPSHVQASISHKQDLAICLLRSV---EEDPNRALSNIGVDIEICQPRPSTNSIATRVLTRREQDELGGLASLGISGESELLLRFSLKESVYKAIYPFLRRYVAFQEAEVTPHVDGTSTIVLFLKGG-AAEGLFEAEGHWRQVDNGRFFLTAVWVRKV 384
The following BLAST results are available for this feature:
BLAST of NO15G01910.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22411.13.200e-8753.374-phosphopantetheinyl transferase entd [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G01910NO15G01910Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G01910.1NO15G01910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G01910.1.cds1NO15G01910.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G01910.1.cds2NO15G01910.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G01910.1.cds3NO15G01910.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G01910.1 ID=NO15G01910.1|Name=NO15G01910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1474bp
ACAGACACACCTCATATAGACAGCCGCCTCCGGCAGCAGCACGACGGCCG
CGACAACAATAGAGGCGTGCCCACCAAGGCGCCGAGGACTTGAAGTGGTC
CCTGTGGCCAAGCTTCAATGACACCCGTCGTCCTGCGACCTCCTGCCTCC
CTAGTCGTTATGGTCCTCTATTCAGTGGTCGCCGCCGGCAGGACGTGGTC
GTACCACCAAGCTTCATGCGCCGTATTCTCCAGTAGGAGAGCACTCCAGA
CAGCCGCCTTCATCTGTGGCACCCGCAGCGCACCATCATCGGTCCGACGA
CGGGAGCAACAACCATGGCATGCGTCTCTCCCCTTCTCTTCTTCCTCCCA
CTCCTCCTCCTCCTCCATTCCACTACGATCGACCAGCACGAGCACCATCC
AGTCAGCAGCCATCCTAAAAGCAGAGCAGCTCTTCCCCACCTCCTTCGAA
ATGGACATCCCACCCATGGGGCACGTATTGGGTTTGCGCCTCCCCCTCCC
TTCTTCCTCCTCCGCCACCAATCACCATGACACCCCTCATTCCTCTGATG
ATACCGAACTCGACCTCTCTCTTCTCGTGGACGGCAAAAAAGAGTCAGAT
CTTTTACATCCCAAAGAGCTGCAGCTGGCACTAGAAATGAGCAACATTGA
GGCACGTCTCGCCTTTGTTGGTGGACGATTAGCCCTCCGCCGAAACCTCC
GCTCACTTCCACGTCCCGCGAGCATTGAGCAGGCGGTGTTGCGTGAAGAG
GGTGGAGCACCTTCTTTGCCCCCGCATGTACAGGCCTCTATAAGTCATAA
GAAGGATTTGGCCGTATGCCTCTTGAGGGGGGTGAGGGAGGAGGAGGAGG
GAGAGAAGATTGCTTCCTCTCACATCGGGGTGGATGTGGAGGTGTGTGAG
CCGCGGACAAGAACTAGTAGTATCGCCACGCGTGTGCTGACATTGAAAGA
GAGGAATGGTTTGGGGGCATTGAAATCTGTGGGAATAAGCGCTGAGAGTG
AGATTTTGTTGAGGTTTTCCTTCAAGGAAAGTGTGTACAAAGCGATACAC
CCTTTTGTCCGCCGCTACGTGGCGTTTCACGAGGCGGAGGTCACGCCACG
GGTTGATGGGACGTGTGCGATTGTGTTGTTGTTGACGGGCGGAGAGGAGG
AGGAGGGTGGATTTGAAGTGAAGGGGGAGTGGAGGAGGGTGGAAGGGGGA
AGGTTCTTTTTGACGGCGGTGGCGGTGACGAAGGTGAGGGAGGGGAGGGT
GGGTTTGGTGCACTTAAAGTTCTGAGTAGAGCGGAGGGGATAGAGAGGAG
GGGATAGAACGGCATGTGTACAAAAATGCGAATTTACATCAGGAGTGACA
TATGGACTGCAGATATGACGCTTCTTGAGTATACATAGAAATCTGGAGTC
AACAAATGAATAACGTATTTTCTTATTGAAGTTACAGCAAAAGAATTGAA
GCGATCAGAAGCCTCTAAGCATGA
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protein sequence of NO15G01910.1

>NO15G01910.1-protein ID=NO15G01910.1-protein|Name=NO15G01910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=386bp
MTPVVLRPPASLVVMVLYSVVAAGRTWSYHQASCAVFSSRRALQTAAFIC
GTRSAPSSVRRREQQPWHASLPFSSSSHSSSSSIPLRSTSTSTIQSAAIL
KAEQLFPTSFEMDIPPMGHVLGLRLPLPSSSSATNHHDTPHSSDDTELDL
SLLVDGKKESDLLHPKELQLALEMSNIEARLAFVGGRLALRRNLRSLPRP
ASIEQAVLREEGGAPSLPPHVQASISHKKDLAVCLLRGVREEEEGEKIAS
SHIGVDVEVCEPRTRTSSIATRVLTLKERNGLGALKSVGISAESEILLRF
SFKESVYKAIHPFVRRYVAFHEAEVTPRVDGTCAIVLLLTGGEEEEGGFE
VKGEWRRVEGGRFFLTAVAVTKVREGRVGLVHLKF*
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mRNA from alignment at chr15:535615..537256+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G01910.1 ID=NO15G01910.1|Name=NO15G01910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1642bp|location=Sequence derived from alignment at chr15:535615..537256+ (Nannochloropsis oceanica)
ACAGACACACCTCATATAGACAGCCGCCTCCGGCAGCAGCACGACGGCCG
CGACAACAATAGAGGCGTGCCCACCAAGGCGCCGAGGACTTGAAGTGGTC
CCTGTGGCCAAGCTTCAATGACACCCGTCGTCCTGCGACCTCCTGCCTCC
CTAGTCGTTATGGTACGTGCGGCCCCCCTGGCCCCTGTCCCTTGGGCCTT
TGGCTCATCCTCGACATAATCTCTCATCAGGTCCTCTATTCAGTGGTCGC
CGCCGGCAGGACGTGGTCGTACCACCAAGCTTCATGCGCCGTATTCTCCA
GTAGGAGAGCACTCCAGACAGGTACAATGACGAGAGGGGCGATTAGCGTG
ACGGTTTGACCACTATCTCATCACACCAGACCACCCTCCATCCCACCATC
TCCTTCTCCATCTTAAATAAGCCGCCTTCATCTGTGGCACCCGCAGCGCA
CCATCATCGGTCCGACGACGGGAGCAACAACCATGGCATGCGTCTCTCCC
CTTCTCTTCTTCCTCCCACTCCTCCTCCTCCTCCATTCCACTACGATCGA
CCAGCACGAGCACCATCCAGTCAGCAGCCATCCTAAAAGCAGAGCAGCTC
TTCCCCACCTCCTTCGAAATGGACATCCCACCCATGGGGCACGTATTGGG
TTTGCGCCTCCCCCTCCCTTCTTCCTCCTCCGCCACCAATCACCATGACA
CCCCTCATTCCTCTGATGATACCGAACTCGACCTCTCTCTTCTCGTGGAC
GGCAAAAAAGAGTCAGATCTTTTACATCCCAAAGAGCTGCAGCTGGCACT
AGAAATGAGCAACATTGAGGCACGTCTCGCCTTTGTTGGTGGACGATTAG
CCCTCCGCCGAAACCTCCGCTCACTTCCACGTCCCGCGAGCATTGAGCAG
GCGGTGTTGCGTGAAGAGGGTGGAGCACCTTCTTTGCCCCCGCATGTACA
GGCCTCTATAAGTCATAAGAAGGATTTGGCCGTATGCCTCTTGAGGGGGG
TGAGGGAGGAGGAGGAGGGAGAGAAGATTGCTTCCTCTCACATCGGGGTG
GATGTGGAGGTGTGTGAGCCGCGGACAAGAACTAGTAGTATCGCCACGCG
TGTGCTGACATTGAAAGAGAGGAATGGTTTGGGGGCATTGAAATCTGTGG
GAATAAGCGCTGAGAGTGAGATTTTGTTGAGGTTTTCCTTCAAGGAAAGT
GTGTACAAAGCGATACACCCTTTTGTCCGCCGCTACGTGGCGTTTCACGA
GGCGGAGGTCACGCCACGGGTTGATGGGACGTGTGCGATTGTGTTGTTGT
TGACGGGCGGAGAGGAGGAGGAGGGTGGATTTGAAGTGAAGGGGGAGTGG
AGGAGGGTGGAAGGGGGAAGGTTCTTTTTGACGGCGGTGGCGGTGACGAA
GGTGAGGGAGGGGAGGGTGGGTTTGGTGCACTTAAAGTTCTGAGTAGAGC
GGAGGGGATAGAGAGGAGGGGATAGAACGGCATGTGTACAAAAATGCGAA
TTTACATCAGGAGTGACATATGGACTGCAGATATGACGCTTCTTGAGTAT
ACATAGAAATCTGGAGTCAACAAATGAATAACGTATTTTCTTATTGAAGT
TACAGCAAAAGAATTGAAGCGATCAGAAGCCTCTAAGCATGA
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Coding sequence (CDS) from alignment at chr15:535615..537256+

>NO15G01910.1 ID=NO15G01910.1|Name=NO15G01910.1|organism=Nannochloropsis oceanica|type=CDS|length=1158bp|location=Sequence derived from alignment at chr15:535615..537256+ (Nannochloropsis oceanica)
ATGACACCCGTCGTCCTGCGACCTCCTGCCTCCCTAGTCGTTATGGTCCT
CTATTCAGTGGTCGCCGCCGGCAGGACGTGGTCGTACCACCAAGCTTCAT
GCGCCGTATTCTCCAGTAGGAGAGCACTCCAGACAGCCGCCTTCATCTGT
GGCACCCGCAGCGCACCATCATCGGTCCGACGACGGGAGCAACAACCATG
GCATGCGTCTCTCCCCTTCTCTTCTTCCTCCCACTCCTCCTCCTCCTCCA
TTCCACTACGATCGACCAGCACGAGCACCATCCAGTCAGCAGCCATCCTA
AAAGCAGAGCAGCTCTTCCCCACCTCCTTCGAAATGGACATCCCACCCAT
GGGGCACGTATTGGGTTTGCGCCTCCCCCTCCCTTCTTCCTCCTCCGCCA
CCAATCACCATGACACCCCTCATTCCTCTGATGATACCGAACTCGACCTC
TCTCTTCTCGTGGACGGCAAAAAAGAGTCAGATCTTTTACATCCCAAAGA
GCTGCAGCTGGCACTAGAAATGAGCAACATTGAGGCACGTCTCGCCTTTG
TTGGTGGACGATTAGCCCTCCGCCGAAACCTCCGCTCACTTCCACGTCCC
GCGAGCATTGAGCAGGCGGTGTTGCGTGAAGAGGGTGGAGCACCTTCTTT
GCCCCCGCATGTACAGGCCTCTATAAGTCATAAGAAGGATTTGGCCGTAT
GCCTCTTGAGGGGGGTGAGGGAGGAGGAGGAGGGAGAGAAGATTGCTTCC
TCTCACATCGGGGTGGATGTGGAGGTGTGTGAGCCGCGGACAAGAACTAG
TAGTATCGCCACGCGTGTGCTGACATTGAAAGAGAGGAATGGTTTGGGGG
CATTGAAATCTGTGGGAATAAGCGCTGAGAGTGAGATTTTGTTGAGGTTT
TCCTTCAAGGAAAGTGTGTACAAAGCGATACACCCTTTTGTCCGCCGCTA
CGTGGCGTTTCACGAGGCGGAGGTCACGCCACGGGTTGATGGGACGTGTG
CGATTGTGTTGTTGTTGACGGGCGGAGAGGAGGAGGAGGGTGGATTTGAA
GTGAAGGGGGAGTGGAGGAGGGTGGAAGGGGGAAGGTTCTTTTTGACGGC
GGTGGCGGTGACGAAGGTGAGGGAGGGGAGGGTGGGTTTGGTGCACTTAA
AGTTCTGA
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Synonyms
Publications