NO30G00040.2, NO30G00040.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G00040.2
Unique NameNO30G00040.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1525
Alignment locationchr30:11410..13617 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:11410..13617 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO30G00040.2 vs.
Match: XP_024520494.1 (uncharacterized protein LOC9660552 [Selaginella moellendorffii])

HSP 1 Score: 83.6 bits (205), Expect = 1.100e-12
Identity = 64/208 (30.77%), Postives = 98/208 (47.12%), Query Frame = 0 
Query:   97 WWRAQTTRYLA-WPSE---SLFAWARHY---------------------FVQDLVRHP-SPTSWNASMQPPPDSAICIHIRHGDKFQEMTLHPMIEYLEAAAWLAGNDTSLSRSQSLFLSTDDPNIIDDIARGRYDHMNFTFYFTRYERRSDDISPGGIARNIGPGLFGSISVANLILGVHPHCKAFVQTTGSNWNRLIDEIRKTDGE 279
            WWRAQ  RYL  +PSE   +L   ARH                      F+Q+  + P     W+      P   + IH+R GDK  EMTLHP  +Y+  A  L      L   ++++LST+  +++D+      D  ++ FYFT+ ER+S  I+     +++G       S  NL++ V      FV   GS W+ +ID +R T+G+
Sbjct:  200 WWRAQAYRYLMRFPSEYLCNLLNQARHQAFGIKAARAIVLSLPRDLPVNFLQEQAQTPLEEFVWSKYGPWIPRPIVSIHVRQGDKGGEMTLHPFKDYINLANTLRRKFPDL---ENVWLSTEMQSVVDE----TMDVKDWKFYFTKVERQSGTIAMTKYMKSLGKRTAFDNSYVNLMMAV--EADLFVGALGSGWSYIIDCMRMTNGK 398
The following BLAST results are available for this feature:
BLAST of NO30G00040.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_024520494.11.100e-1230.77uncharacterized protein LOC9660552 [Selaginella mo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G00040NO30G00040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G00040.2NO30G00040.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G00040.2.cds1NO30G00040.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00040.2.cds2NO30G00040.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00040.2.cds3NO30G00040.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00040.2.cds4NO30G00040.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00040.2.cds5NO30G00040.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00040.2.cds6NO30G00040.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00040.2.cds7NO30G00040.2.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00040.2.cds8NO30G00040.2.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G00040.2 ID=NO30G00040.2|Name=NO30G00040.2|organism=Nannochloropsis oceanica|type=mRNA|length=1525bp
GGATGGAAACATGGCCAGCAACATTAGGCCTCCGACCATCATCTTCTATC
TCGCACACTGTCCTGCTACTACTTATCGGAGCATTCTCATATTGCTGCTC
AACGAAAAATATATCTATCAAGGCATGGAGACAGGAGTCAATTAGTCCCC
ACAAGCATACGTTGAAGGTGGGACCTTCTCCTATCGAGCTATGGACCCTA
TTTCCTCAAGGTTATGATAACGAAACCGCAGTGGTCCAGCGACGAATCAA
AGAGAACCAGAATCCGCTGGACTGCGAAAATGGAAAATATTTTTTATACA
ACCTCAACAATTATGGCATGGGTTCTGACCTTCATACGCTTGGCAAGTAG
ACAATATATCCCTTTGAAAGGACAGAGTCATCTATTGATCAAACCCGTGG
GGCACACACACAACTACAGGTCTTATGATTGGCTTTGCAATGCAGCACAA
CCGCACCCTGCTCTACCATCCGCAGACCAACTGGCGATACACATCTGAGC
ATATTTGCCATGAAATTTTGACTCCTGATTGTTTTTTCAGACCGCTTTCA
CGATGCCAGTACATGGCAAACAGCATAGATGTCGTCAGCAAAGAGTTTAG
TGATACTTCACGGGACCTTGTGGATGACCAGTTCCTGCTGGCCCCGAGCT
GTTTTGATTTGGACAAAGGTCTTATTCCCAGTCTGTCCGACTGGCCGACG
AAAGGCATCTCATGGTGGAGGGCGCAAACAACAAGGTATTTGGCTTGGCC
CTCTGAGAGCCTTTTTGCTTGGGCAAGACACTATTTTGTGCAAGACTTGG
TCAGACACCCATCTCCTACTAGTTGGAACGCCTCCATGCAACCTCCCCCC
GATAGTGCAATATGTATCCATATTCGCCACGGCGATAAATTCCAAGAGAT
GACGCTACATCCTATGATAGAATACCTTGAAGCTGCTGCGTGGCTAGCTG
GGAACGATACTAGCTTGTCTCGAAGCCAAAGTTTATTTCTGTCCACTGAC
GATCCCAACATAATCGATGATATCGCCCGCGGCCGTTATGACCATATGAA
TTTCACTTTCTACTTCACAAGGTATGAGAGGCGGTCTGACGACATAAGTC
CCGGTGGAATCGCTAGGAATATAGGCCCCGGATTATTCGGCAGCATTTCT
GTGGCCAATTTGATATTAGGCGTGCATCCACACTGCAAGGCTTTTGTGCA
GACCACAGGTTCGAACTGGAATAGATTGATCGATGAAATACGAAAAACAG
ACGGTGAAAGGAAAAACGCCGCCTCCATAGATTTAGAGCCCGGAGAATGG
AGAAAAAGATGATGGGGAAAAAGTAATTGTAAGATTGACCATTGCGGCGC
AAATACCACTAACACTGGGCCTTCTTCCTCTATGGAAAAAAGGCGCGTAA
GTCACACCGCAGAGCTTTTCGCAGGCAGCCGGTTTCACATTCTCTTTAAT
GAATCAATAGATTGATTACGAGTTAAGGCAACGGTGAACATTCCAAAAAA
AAATACTCTAGATACAAGCGAGGTT
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protein sequence of NO30G00040.2

>NO30G00040.2-protein ID=NO30G00040.2-protein|Name=NO30G00040.2|organism=Nannochloropsis oceanica|type=polypeptide|length=296bp
MIGFAMQHNRTLLYHPQTNWRYTSEHICHEILTPDCFFRPLSRCQYMANS
IDVVSKEFSDTSRDLVDDQFLLAPSCFDLDKGLIPSLSDWPTKGISWWRA
QTTRYLAWPSESLFAWARHYFVQDLVRHPSPTSWNASMQPPPDSAICIHI
RHGDKFQEMTLHPMIEYLEAAAWLAGNDTSLSRSQSLFLSTDDPNIIDDI
ARGRYDHMNFTFYFTRYERRSDDISPGGIARNIGPGLFGSISVANLILGV
HPHCKAFVQTTGSNWNRLIDEIRKTDGERKNAASIDLEPGEWRKR*
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mRNA from alignment at chr30:11410..13617-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G00040.2 ID=NO30G00040.2|Name=NO30G00040.2|organism=Nannochloropsis oceanica|type=mRNA|length=2208bp|location=Sequence derived from alignment at chr30:11410..13617- (Nannochloropsis oceanica)
GGATGGAAACATGGCCAGCAACATTAGGCCTCCGACCATCATCTTCTATC
TCGCACACTGTCCTGCTACTACTTATCGGAGCATTCTCATATTGCTGCTC
AACGAAAAATATATCTATCAAGGCATGGAGACAGGAGTCAATTAGTCCCC
ACAAGCATACGTTGAAGGTGGGACCTTCTCCTATCGAGCTATGGACCCTA
TTTCCTCAAGGTAAGAGGATTTATCTCATTAAGCTGGTAGGTGTGGCGGA
CTTTTAACCGCGCAATTGCACACATCTTTCTACTTGTGCTTTGATATAGG
TTATGATAACGAAACCGCAGTGGTCCAGCGACGAATCAAAGAGAACCAGA
ATCCGCTGGACTGCGAAAATGGAAAATATTTTTTATACAACCTCAACAAT
TATGGCATGGGTTCTGACCTTCATACGCTTGGCAAGTAGACAATATATCC
CTTTGAAAGGACAGAGTCATCTATTGATCAAACCCGTGGGGCACACACAC
AACTACAGGTCTTATGATTGGCTTTGCAATGCAGCACAACCGCACCCTGC
TCTACCATCCGCAGACGTAAGTGCTATGGGAGAAGTCAATCGTTATTCTG
TCGCGATTCAGATCATAATTTATGATTCCTTTCCCAAACATAGCAACTGG
CGATACACATCTGAGCATATTTGCCATGAAATTTTGACTCCTGATTGTTT
TTTCAGACCGCTTTCACGATGCCAGGTCTGTATTTTATGCTCTTTTACTT
GTACCTTCAATCAATATTTTCTCTGAACCACGGCCTATAACAGTACATGG
CAAACAGCATAGATGTCGTCAGCAAAGAGTTTAGTGATACTTCACGGGAC
CTTGTGGATGACCAGTTCCTGCTGGCCCCGAGCTGTTTTGATTTGGACAA
AGGTCTTATTCCCAGTCTGTCCGACTGGCCGACGAAAGGCATCTCATGGT
GGAGGGCGCAAACAACAAGGTAATCAAACACGGCATGCATTCCCTACTTT
CCTTTAACGATCTGTTTGTAGCAGGAATATGCTATTCCAAAATCCATGCA
ATTTATGATTTAGGTATTTGGCTTGGCCCTCTGAGAGCCTTTTTGCTTGG
GCAAGACACTATTTTGTGCAAGACTTGGTCAGGTGAGGTCGATTTCTCAA
CCCGACGAAAAATTATCCAAATTTTTTTTCTTACCATTGCTCGTCAATGC
CTAGACACCCATCTCCTACTAGTTGGAACGCCTCCATGCAACCTCCCCCC
GATAGTGCAATATGTATCCATATTCGCCACGGCGATAAATTCCAAGAGAT
GACGTAAGTATGACACATGGACTATTCTCGCTCTCTCGTTCCCCTTTACC
TACAGAACGAGCACCACGACGTGACATACTTCCTACACGGATAGGCTACA
TCCTATGATAGAATACCTTGAAGCTGCTGCGTGGCTAGCTGGGAACGATA
CTAGCTTGTCTCGAAGCCAAAGTTTATTTCTGTCCACTGACGATCCCAAC
ATAATCGATGATATCGCCCGCGGCCGTTATGACCATATGAATTTCACTTT
CTACTTCACAAGGTAAAAGTCTTTTGGTTCGGGCATCGAGTTTACTTAGA
CACATACAGATCATTCTTTCTCTTTCGTGGTCTGCAGGTATGAGAGGCGG
TCTGACGACATAAGTCCCGGTGGAATCGCTAGGAATATAGGCCCCGGATT
ATTCGGCAGGTGAGTGTGGCTACATGAAGGACACCCATACACACTTGGAG
ACGACAAGAGGTATAACTAAGACTGCGCTCCTCCTTCCTGCCTTCCCCTT
CCCCTCTATTCTTGTATTTGAAATAGCATTTCTGTGGCCAATTTGATATT
AGGCGTGCATCCACACTGCAAGGCTTTTGTGCAGACCACAGGTTCGAACT
GGAATAGATTGATCGATGAAATACGAAAAACAGACGGTGAAAGGAAAAAC
GCCGCCTCCATAGATTTAGAGCCCGGAGAATGGAGAAAAAGATGATGGGG
AAAAAGTAATTGTAAGATTGACCATTGCGGCGCAAATACCACTAACACTG
GGCCTTCTTCCTCTATGGAAAAAAGGCGCGTAAGTCACACCGCAGAGCTT
TTCGCAGGCAGCCGGTTTCACATTCTCTTTAATGAATCAATAGATTGATT
ACGAGTTAAGGCAACGGTGAACATTCCAAAAAAAAATACTCTAGATACAA
GCGAGGTT
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Coding sequence (CDS) from alignment at chr30:11410..13617-

>NO30G00040.2 ID=NO30G00040.2|Name=NO30G00040.2|organism=Nannochloropsis oceanica|type=CDS|length=888bp|location=Sequence derived from alignment at chr30:11410..13617- (Nannochloropsis oceanica)
ATGATTGGCTTTGCAATGCAGCACAACCGCACCCTGCTCTACCATCCGCA
GACCAACTGGCGATACACATCTGAGCATATTTGCCATGAAATTTTGACTC
CTGATTGTTTTTTCAGACCGCTTTCACGATGCCAGTACATGGCAAACAGC
ATAGATGTCGTCAGCAAAGAGTTTAGTGATACTTCACGGGACCTTGTGGA
TGACCAGTTCCTGCTGGCCCCGAGCTGTTTTGATTTGGACAAAGGTCTTA
TTCCCAGTCTGTCCGACTGGCCGACGAAAGGCATCTCATGGTGGAGGGCG
CAAACAACAAGGTATTTGGCTTGGCCCTCTGAGAGCCTTTTTGCTTGGGC
AAGACACTATTTTGTGCAAGACTTGGTCAGACACCCATCTCCTACTAGTT
GGAACGCCTCCATGCAACCTCCCCCCGATAGTGCAATATGTATCCATATT
CGCCACGGCGATAAATTCCAAGAGATGACGCTACATCCTATGATAGAATA
CCTTGAAGCTGCTGCGTGGCTAGCTGGGAACGATACTAGCTTGTCTCGAA
GCCAAAGTTTATTTCTGTCCACTGACGATCCCAACATAATCGATGATATC
GCCCGCGGCCGTTATGACCATATGAATTTCACTTTCTACTTCACAAGGTA
TGAGAGGCGGTCTGACGACATAAGTCCCGGTGGAATCGCTAGGAATATAG
GCCCCGGATTATTCGGCAGCATTTCTGTGGCCAATTTGATATTAGGCGTG
CATCCACACTGCAAGGCTTTTGTGCAGACCACAGGTTCGAACTGGAATAG
ATTGATCGATGAAATACGAAAAACAGACGGTGAAAGGAAAAACGCCGCCT
CCATAGATTTAGAGCCCGGAGAATGGAGAAAAAGATGA
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Synonyms
Publications