NO25G00750.1, NO25G00750.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G00750.1
Unique NameNO25G00750.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1593
Alignment locationchr25:207300..208892 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:207300..208892 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G00750.1 vs.
Match: XP_005854213.1 (thioredoxin-like protein [Nannochloropsis gaditana CCMP526]; EKU22152.1 thioredoxin-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 508.4 bits (1308), Expect = 2.600e-140
Identity = 284/539 (52.69%), Postives = 347/539 (64.38%), Query Frame = 0 
Query:    1 MRSPPHVRLIRRRSSSV------LQLLLLLAIPLSKAYEQYLFSRTTTSPSKIEKDTSPAPALSNVLDLDESYFNNLITEGEPWAIMFYSPTCGHCQHFAPTWVAVWKAIQDVKRSNNGRLGGLRIGAVSCLAEPGVCRNEKVNSYPTLKAFGLTEGNGKGVVVRQQTEKKIVDWLMDKYTEAAAAAVPVAVTA-------AAAEAGQGSFSIDEDG--QKRSAAGSANAVATPN--GADSKNTRTTAQGPEEIEAQAKFSVEELKRARVEDAFTSLRFALDHDVFLGSKVLMEEGLVSLKDLLHVLSLLFPGKKRRAAFRGLLESVYPLVELSIEEWEAALGVHLDPLAPRVAAAGVAGAVGAVATAGVGRKKKEYEWVVCTSAAGYTCGLWMLFHLLTVKSAVRAESKATSYSTSIISPPYVMKMIQGFVSHFFGCQDCRTHFLAAYEEGRARWEGGREEGKGAVWWVWWLHDKVNLRLGKRRWPTRERCRRCWKEGEKEDGGEEEPEWEAIYEAMVEDYNVHDTELKGE-REWGGK 522
            MR    +R  R  +S        L  LL L +P S AYEQYLFS+ + S           P L +V DL  + F +L   GEPWAIMFYSPTCGHCQHFAPTW AVW A++  K      LGGL+IGAVSCLAE G C++E+V++YPTLKA+G+   NGKG  +    ++ ++ W+  K+TE  A      V         A +   + S S D+ G    R+A  ++N  ATP   G  S NTRT +Q P ++EA+   S+  L+RARVEDAFTSLRFALDHD+FLGSKVL  + L SL+DLLHVLSLLFPG  RR  FRGLLE+VYPL E+ I EWE  L  HLDP+ P + AA  AG  G     G    K+ YEW VC   AGYTCGLW LFHLL+VKSAVRA  KA S STS++SP  V+ +I+GFVS+FFGCQ+CR HFL A+EE R RW       KGAVWWV+ LHDKVN+RLGKRRWP   +C RCW     ++G   EPEWEA+YE MV+ Y+VHDTE  GE R  GG+
Sbjct:   11 MREITRIRKTRLHTSCTACLLPPLIFLLSLLLPTSYAYEQYLFSKASDSSR---------PELKSVEDLSRTAFESLKANGEPWAIMFYSPTCGHCQHFAPTWAAVWGALRGKKE-----LGGLQIGAVSCLAEAGACQDERVHAYPTLKAYGVRGSNGKGTAIPNNNDEDLISWITSKFTEQVAGEDEGEVLMGNEAREPARSAPRETSVSQDQPGPDSSRAAPAASNIAATPKKEGPQSPNTRTRSQAPGDLEAEDSLSIPALRRARVEDAFTSLRFALDHDLFLGSKVLRGQALSSLRDLLHVLSLLFPGGPRRRLFRGLLEAVYPLKEIGIAEWEDLLARHLDPVLPSLHAASRAGGEG--GEGGERASKRSYEWAVCGREAGYTCGLWTLFHLLSVKSAVRARDKAASSSTSVVSPLNVLLVIEGFVSNFFGCQECRDHFLNAFEETRGRW--ADRGPKGAVWWVYDLHDKVNVRLGKRRWPPVRKCPRCW----GKEGASGEPEWEALYEEMVKGYDVHDTETAGEDRAMGGQ 527
The following BLAST results are available for this feature:
BLAST of NO25G00750.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854213.12.600e-14052.69thioredoxin-like protein [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G00750NO25G00750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G00750.1NO25G00750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G00750.1.cds1NO25G00750.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G00750.1 ID=NO25G00750.1|Name=NO25G00750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1593bp
ATGAGAAGCCCTCCTCATGTGCGACTAATACGTCGACGCTCCTCCTCAGT
CCTCCAACTCCTCCTTCTCCTAGCTATACCCCTTTCCAAAGCTTACGAAC
AATACCTCTTTAGCAGAACCACCACTTCCCCCTCCAAGATCGAAAAAGAC
ACATCTCCTGCCCCCGCCCTCTCCAATGTCCTTGATTTGGATGAATCCTA
CTTCAACAACCTAATAACAGAGGGGGAACCATGGGCTATCATGTTTTATT
CGCCCACCTGTGGACACTGCCAGCATTTTGCCCCCACGTGGGTAGCAGTC
TGGAAAGCAATACAGGATGTGAAGAGGAGTAACAATGGTCGGTTGGGAGG
CCTGAGAATAGGAGCAGTGAGCTGCTTGGCCGAGCCAGGGGTTTGCCGGA
ATGAGAAAGTGAACAGCTACCCGACGTTGAAGGCGTTTGGGCTGACTGAG
GGGAATGGGAAGGGAGTGGTAGTGAGACAGCAAACAGAAAAAAAAATTGT
TGATTGGTTGATGGACAAGTATACAGAAGCAGCAGCAGCAGCAGTGCCAG
TAGCAGTGACAGCAGCTGCAGCGGAAGCAGGTCAAGGCTCCTTTTCAATT
GACGAGGACGGTCAAAAGCGCTCTGCAGCTGGGAGTGCTAATGCTGTCGC
TACGCCCAACGGTGCCGATTCCAAAAACACCAGGACGACTGCCCAGGGCC
CGGAAGAAATAGAAGCACAAGCGAAATTCTCTGTAGAGGAGCTGAAACGA
GCGAGGGTAGAGGATGCTTTCACTTCCTTGAGGTTCGCATTGGACCACGA
TGTATTCTTGGGGAGTAAGGTCTTGATGGAGGAAGGGCTTGTCAGTCTCA
AAGACCTCCTGCATGTCCTCTCCTTGCTTTTTCCCGGCAAGAAGAGGAGG
GCCGCGTTCAGGGGATTGCTCGAGAGCGTGTACCCCCTCGTAGAGTTGTC
GATCGAGGAATGGGAGGCTGCTCTGGGCGTGCATCTTGACCCGCTCGCCC
CTCGAGTGGCAGCAGCAGGAGTAGCAGGAGCAGTGGGGGCAGTTGCCACG
GCAGGTGTGGGGAGGAAAAAGAAGGAGTATGAGTGGGTCGTGTGTACGTC
GGCGGCAGGCTACACGTGCGGCCTGTGGATGTTGTTCCACCTCTTGACCG
TGAAGAGCGCCGTGCGTGCAGAGAGCAAGGCTACGTCTTATTCGACGTCC
ATTATCTCCCCTCCTTATGTGATGAAAATGATCCAGGGATTCGTCTCCCA
TTTCTTTGGCTGCCAAGACTGCAGGACGCACTTCCTGGCAGCGTATGAGG
AGGGGAGGGCGAGGTGGGAGGGAGGAAGGGAGGAAGGGAAGGGGGCTGTA
TGGTGGGTATGGTGGCTGCATGACAAGGTGAACTTGCGGTTGGGGAAGAG
GAGGTGGCCGACGAGGGAAAGATGCAGGAGGTGCTGGAAGGAGGGAGAGA
AGGAGGACGGGGGGGAGGAAGAGCCGGAATGGGAGGCCATTTATGAGGCG
ATGGTGGAGGACTATAATGTACATGACACGGAGTTGAAAGGAGAGAGAGA
GTGGGGAGGGAAAGGGGGGGGGGGGTGGAGTTGTCGTCGTTGA
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protein sequence of NO25G00750.1

>NO25G00750.1-protein ID=NO25G00750.1-protein|Name=NO25G00750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=531bp
MRSPPHVRLIRRRSSSVLQLLLLLAIPLSKAYEQYLFSRTTTSPSKIEKD
TSPAPALSNVLDLDESYFNNLITEGEPWAIMFYSPTCGHCQHFAPTWVAV
WKAIQDVKRSNNGRLGGLRIGAVSCLAEPGVCRNEKVNSYPTLKAFGLTE
GNGKGVVVRQQTEKKIVDWLMDKYTEAAAAAVPVAVTAAAAEAGQGSFSI
DEDGQKRSAAGSANAVATPNGADSKNTRTTAQGPEEIEAQAKFSVEELKR
ARVEDAFTSLRFALDHDVFLGSKVLMEEGLVSLKDLLHVLSLLFPGKKRR
AAFRGLLESVYPLVELSIEEWEAALGVHLDPLAPRVAAAGVAGAVGAVAT
AGVGRKKKEYEWVVCTSAAGYTCGLWMLFHLLTVKSAVRAESKATSYSTS
IISPPYVMKMIQGFVSHFFGCQDCRTHFLAAYEEGRARWEGGREEGKGAV
WWVWWLHDKVNLRLGKRRWPTRERCRRCWKEGEKEDGGEEEPEWEAIYEA
MVEDYNVHDTELKGEREWGGKGGGGWSCRR*
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mRNA from alignment at chr25:207300..208892-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G00750.1 ID=NO25G00750.1|Name=NO25G00750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1593bp|location=Sequence derived from alignment at chr25:207300..208892- (Nannochloropsis oceanica)
ATGAGAAGCCCTCCTCATGTGCGACTAATACGTCGACGCTCCTCCTCAGT
CCTCCAACTCCTCCTTCTCCTAGCTATACCCCTTTCCAAAGCTTACGAAC
AATACCTCTTTAGCAGAACCACCACTTCCCCCTCCAAGATCGAAAAAGAC
ACATCTCCTGCCCCCGCCCTCTCCAATGTCCTTGATTTGGATGAATCCTA
CTTCAACAACCTAATAACAGAGGGGGAACCATGGGCTATCATGTTTTATT
CGCCCACCTGTGGACACTGCCAGCATTTTGCCCCCACGTGGGTAGCAGTC
TGGAAAGCAATACAGGATGTGAAGAGGAGTAACAATGGTCGGTTGGGAGG
CCTGAGAATAGGAGCAGTGAGCTGCTTGGCCGAGCCAGGGGTTTGCCGGA
ATGAGAAAGTGAACAGCTACCCGACGTTGAAGGCGTTTGGGCTGACTGAG
GGGAATGGGAAGGGAGTGGTAGTGAGACAGCAAACAGAAAAAAAAATTGT
TGATTGGTTGATGGACAAGTATACAGAAGCAGCAGCAGCAGCAGTGCCAG
TAGCAGTGACAGCAGCTGCAGCGGAAGCAGGTCAAGGCTCCTTTTCAATT
GACGAGGACGGTCAAAAGCGCTCTGCAGCTGGGAGTGCTAATGCTGTCGC
TACGCCCAACGGTGCCGATTCCAAAAACACCAGGACGACTGCCCAGGGCC
CGGAAGAAATAGAAGCACAAGCGAAATTCTCTGTAGAGGAGCTGAAACGA
GCGAGGGTAGAGGATGCTTTCACTTCCTTGAGGTTCGCATTGGACCACGA
TGTATTCTTGGGGAGTAAGGTCTTGATGGAGGAAGGGCTTGTCAGTCTCA
AAGACCTCCTGCATGTCCTCTCCTTGCTTTTTCCCGGCAAGAAGAGGAGG
GCCGCGTTCAGGGGATTGCTCGAGAGCGTGTACCCCCTCGTAGAGTTGTC
GATCGAGGAATGGGAGGCTGCTCTGGGCGTGCATCTTGACCCGCTCGCCC
CTCGAGTGGCAGCAGCAGGAGTAGCAGGAGCAGTGGGGGCAGTTGCCACG
GCAGGTGTGGGGAGGAAAAAGAAGGAGTATGAGTGGGTCGTGTGTACGTC
GGCGGCAGGCTACACGTGCGGCCTGTGGATGTTGTTCCACCTCTTGACCG
TGAAGAGCGCCGTGCGTGCAGAGAGCAAGGCTACGTCTTATTCGACGTCC
ATTATCTCCCCTCCTTATGTGATGAAAATGATCCAGGGATTCGTCTCCCA
TTTCTTTGGCTGCCAAGACTGCAGGACGCACTTCCTGGCAGCGTATGAGG
AGGGGAGGGCGAGGTGGGAGGGAGGAAGGGAGGAAGGGAAGGGGGCTGTA
TGGTGGGTATGGTGGCTGCATGACAAGGTGAACTTGCGGTTGGGGAAGAG
GAGGTGGCCGACGAGGGAAAGATGCAGGAGGTGCTGGAAGGAGGGAGAGA
AGGAGGACGGGGGGGAGGAAGAGCCGGAATGGGAGGCCATTTATGAGGCG
ATGGTGGAGGACTATAATGTACATGACACGGAGTTGAAAGGAGAGAGAGA
GTGGGGAGGGAAAGGGGGGGGGGGGTGGAGTTGTCGTCGTTGA
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Coding sequence (CDS) from alignment at chr25:207300..208892-

>NO25G00750.1 ID=NO25G00750.1|Name=NO25G00750.1|organism=Nannochloropsis oceanica|type=CDS|length=1593bp|location=Sequence derived from alignment at chr25:207300..208892- (Nannochloropsis oceanica)
ATGAGAAGCCCTCCTCATGTGCGACTAATACGTCGACGCTCCTCCTCAGT
CCTCCAACTCCTCCTTCTCCTAGCTATACCCCTTTCCAAAGCTTACGAAC
AATACCTCTTTAGCAGAACCACCACTTCCCCCTCCAAGATCGAAAAAGAC
ACATCTCCTGCCCCCGCCCTCTCCAATGTCCTTGATTTGGATGAATCCTA
CTTCAACAACCTAATAACAGAGGGGGAACCATGGGCTATCATGTTTTATT
CGCCCACCTGTGGACACTGCCAGCATTTTGCCCCCACGTGGGTAGCAGTC
TGGAAAGCAATACAGGATGTGAAGAGGAGTAACAATGGTCGGTTGGGAGG
CCTGAGAATAGGAGCAGTGAGCTGCTTGGCCGAGCCAGGGGTTTGCCGGA
ATGAGAAAGTGAACAGCTACCCGACGTTGAAGGCGTTTGGGCTGACTGAG
GGGAATGGGAAGGGAGTGGTAGTGAGACAGCAAACAGAAAAAAAAATTGT
TGATTGGTTGATGGACAAGTATACAGAAGCAGCAGCAGCAGCAGTGCCAG
TAGCAGTGACAGCAGCTGCAGCGGAAGCAGGTCAAGGCTCCTTTTCAATT
GACGAGGACGGTCAAAAGCGCTCTGCAGCTGGGAGTGCTAATGCTGTCGC
TACGCCCAACGGTGCCGATTCCAAAAACACCAGGACGACTGCCCAGGGCC
CGGAAGAAATAGAAGCACAAGCGAAATTCTCTGTAGAGGAGCTGAAACGA
GCGAGGGTAGAGGATGCTTTCACTTCCTTGAGGTTCGCATTGGACCACGA
TGTATTCTTGGGGAGTAAGGTCTTGATGGAGGAAGGGCTTGTCAGTCTCA
AAGACCTCCTGCATGTCCTCTCCTTGCTTTTTCCCGGCAAGAAGAGGAGG
GCCGCGTTCAGGGGATTGCTCGAGAGCGTGTACCCCCTCGTAGAGTTGTC
GATCGAGGAATGGGAGGCTGCTCTGGGCGTGCATCTTGACCCGCTCGCCC
CTCGAGTGGCAGCAGCAGGAGTAGCAGGAGCAGTGGGGGCAGTTGCCACG
GCAGGTGTGGGGAGGAAAAAGAAGGAGTATGAGTGGGTCGTGTGTACGTC
GGCGGCAGGCTACACGTGCGGCCTGTGGATGTTGTTCCACCTCTTGACCG
TGAAGAGCGCCGTGCGTGCAGAGAGCAAGGCTACGTCTTATTCGACGTCC
ATTATCTCCCCTCCTTATGTGATGAAAATGATCCAGGGATTCGTCTCCCA
TTTCTTTGGCTGCCAAGACTGCAGGACGCACTTCCTGGCAGCGTATGAGG
AGGGGAGGGCGAGGTGGGAGGGAGGAAGGGAGGAAGGGAAGGGGGCTGTA
TGGTGGGTATGGTGGCTGCATGACAAGGTGAACTTGCGGTTGGGGAAGAG
GAGGTGGCCGACGAGGGAAAGATGCAGGAGGTGCTGGAAGGAGGGAGAGA
AGGAGGACGGGGGGGAGGAAGAGCCGGAATGGGAGGCCATTTATGAGGCG
ATGGTGGAGGACTATAATGTACATGACACGGAGTTGAAAGGAGAGAGAGA
GTGGGGAGGGAAAGGGGGGGGGGGGTGGAGTTGTCGTCGTTGA
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Synonyms
Publications