NO24G01750.1, NO24G01750.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G01750.1
Unique NameNO24G01750.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1294
Alignment locationchr24:466186..467707 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:466186..467707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO24G01750.1 vs.
Match: EWM24387.1 (putative ras family gtp binding protein [Nannochloropsis gaditana])

HSP 1 Score: 261.2 bits (666), Expect = 3.700e-66
Identity = 151/276 (54.71%), Postives = 187/276 (67.75%), Query Frame = 0 
Query:    1 MPPSSTSPRAPPPLLPPSPRGILHRKLAVVGHRGAGKTSLIRRFVENAFT--SHHEPTIEALYRRVLETPTPARGIGRR-GRQRGVKQHVCCDIVDTAGHTHEQAE--EVDYSRFLSRNALVGVHGYVLVYDMTSRQSFCKVQEFNDVLVRFQGGSPVPRVLVACMLDQCAQRKVGKEEGRKLARALGNIPFVEVSSKHNINVGEVFNLLLAEVEREETGELGGIEGGRGIGRSPSLIGGEGVEGEFLGLVGE-EKGWKELQLQRWGDGYA-CIVS 270
            MPPSSTSPR PP L PP   G++HRK AVVGHRGAGK+S+ RRFV+  FT  S  +P  E+LYR+VLET    RG+ +R        Q VCCDIVDT G T +  E  + ++SRFLSRNAL+G+HGY+LVYD+TSR+SF  +Q  N+V++R+ G SPVPRVL+   LD CAQR+VGK EGR LAR LG IPF+E+S+KHN++V   F LLL EVER E GE      G+G     SL+GGE  E  FLG   E E+ W+        DGY  C+VS
Sbjct:    1 MPPSSTSPRPPPSLRPPPLLGVVHRKFAVVGHRGAGKSSVTRRFVQEKFTIQSAADPDEESLYRKVLETEGEERGVAKRKSSHEKTTQLVCCDIVDTPGPTRQYTEYAKEEFSRFLSRNALIGIHGYLLVYDITSRESFTIIQTLNEVVLRYHGDSPVPRVLLGGKLDLCAQRQVGKGEGRALARTLG-IPFLEISAKHNVDVERAFRLLLEEVERGEAGE------GKG---KWSLLGGEEEEQAFLGCRHERERSWEY-------DGYGYCVVS 259
The following BLAST results are available for this feature:
BLAST of NO24G01750.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24387.13.700e-6654.71putative ras family gtp binding protein [Nannochlo... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G01750NO24G01750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G01750.1NO24G01750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G01750.1.cds1NO24G01750.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G01750.1 ID=NO24G01750.1|Name=NO24G01750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1294bp
ACAGCGAAGTGTGAGCCAAAAATTATGCCGCCATCGTCCACTTCACCACG
TGCACCGCCACCCCTCCTCCCTCCTTCACCTCGAGGGATACTTCATCGCA
AGTTGGCGGTGGTGGGGCATCGGGGGGCGGGGAAAACCAGCTTGATCCGC
CGCTTTGTGGAGAATGCATTTACCTCCCACCATGAACCCACAATCGAGGC
ACTCTACCGCCGGGTGCTCGAGACCCCCACACCTGCACGAGGCATCGGAA
GACGAGGAAGGCAACGAGGGGTGAAACAGCACGTATGTTGCGACATCGTT
GACACGGCGGGGCATACGCATGAGCAAGCAGAGGAAGTGGACTACTCTCG
TTTCCTCTCCCGCAATGCCCTGGTGGGTGTACATGGCTATGTCCTAGTGT
ACGATATGACTTCCCGCCAATCTTTTTGCAAAGTTCAGGAGTTCAATGAT
GTATTGGTGAGGTTTCAAGGGGGCAGCCCTGTACCCCGAGTCTTGGTCGC
GTGCATGCTTGATCAATGTGCGCAACGCAAGGTAGGGAAGGAGGAAGGGA
GGAAACTCGCTCGAGCTCTGGGCAACATTCCGTTTGTCGAGGTCTCATCG
AAGCACAATATAAATGTTGGAGAAGTATTTAATCTACTATTGGCAGAGGT
AGAGAGGGAGGAAACGGGAGAGCTTGGGGGAATTGAGGGAGGGCGAGGGA
TAGGGAGGAGCCCTAGTTTGATTGGAGGGGAAGGGGTGGAGGGAGAGTTC
TTGGGGTTGGTGGGTGAGGAGAAGGGCTGGAAGGAGCTGCAGCTACAGAG
ATGGGGAGATGGTTATGCCTGTATCGTGAGCTAGGAGTGCGTCGGGACAT
TTTTGGTGTGAAGATTTTTGATTCGATAGGAAAGACAAGCGGGAGAAGGA
TTGAGAGGGAGGGAATGGGGAGAGGGGAGAAAAGACATATTTTCGGGGCA
AGTTCTCCTCACGTTCGTTCAGAATGAGTTAGAGGTTGGAGGGGGAGGGA
TAGGGGAGGGGGGAAGGGAGGGAAGGGAGGGAGAAGAGGAGAAAATCGGC
CACGTTTTGGGGGCAAGTCCGTATTGTTCATATAGTCCAGGACAGGGAAG
GAAGGGGATACGATGAAAAGGAGAGGCCTGTGTAACGCTGCTACCATTAT
TCAATGATCCCAAATGATTGCCCTTGGGACAAAGACAAGAAGAGGGCAGG
GCCTACATTTAAATCCTGAACAACAAGGAGCGAACGCCATCGAAGGGAGG
AAAAAGGAAGCCTTGAAGCACTATATTTGACTTTTACCGGCACA
back to top

protein sequence of NO24G01750.1

>NO24G01750.1-protein ID=NO24G01750.1-protein|Name=NO24G01750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=270bp
MPPSSTSPRAPPPLLPPSPRGILHRKLAVVGHRGAGKTSLIRRFVENAFT
SHHEPTIEALYRRVLETPTPARGIGRRGRQRGVKQHVCCDIVDTAGHTHE
QAEEVDYSRFLSRNALVGVHGYVLVYDMTSRQSFCKVQEFNDVLVRFQGG
SPVPRVLVACMLDQCAQRKVGKEEGRKLARALGNIPFVEVSSKHNINVGE
VFNLLLAEVEREETGELGGIEGGRGIGRSPSLIGGEGVEGEFLGLVGEEK
GWKELQLQRWGDGYACIVS*
back to top

mRNA from alignment at chr24:466186..467707+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G01750.1 ID=NO24G01750.1|Name=NO24G01750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1522bp|location=Sequence derived from alignment at chr24:466186..467707+ (Nannochloropsis oceanica)
ACAGCGAAGTGTGTACGTGCGTTGTTCTGTTCTACGCCGACGAATCAGAT
CGGCCATATTACTACCGGCTGATTCTCATGTATGTCCTTCCCTTGGTTCG
TGCTATTTGTGTCTTAACGCTTACTCATATCCCTCCACACGTCATTCTTG
TCAACATCTATACAATCAATGGCCAGTTCTTGCGTTCTCCCTTCTCACAA
CATATAAAAAACACTTCTCCCCCACTCCGAATATTCACAGGAGCCAAAAA
TTATGCCGCCATCGTCCACTTCACCACGTGCACCGCCACCCCTCCTCCCT
CCTTCACCTCGAGGGATACTTCATCGCAAGTTGGCGGTGGTGGGGCATCG
GGGGGCGGGGAAAACCAGCTTGATCCGCCGCTTTGTGGAGAATGCATTTA
CCTCCCACCATGAACCCACAATCGAGGCACTCTACCGCCGGGTGCTCGAG
ACCCCCACACCTGCACGAGGCATCGGAAGACGAGGAAGGCAACGAGGGGT
GAAACAGCACGTATGTTGCGACATCGTTGACACGGCGGGGCATACGCATG
AGCAAGCAGAGGAAGTGGACTACTCTCGTTTCCTCTCCCGCAATGCCCTG
GTGGGTGTACATGGCTATGTCCTAGTGTACGATATGACTTCCCGCCAATC
TTTTTGCAAAGTTCAGGAGTTCAATGATGTATTGGTGAGGTTTCAAGGGG
GCAGCCCTGTACCCCGAGTCTTGGTCGCGTGCATGCTTGATCAATGTGCG
CAACGCAAGGTAGGGAAGGAGGAAGGGAGGAAACTCGCTCGAGCTCTGGG
CAACATTCCGTTTGTCGAGGTCTCATCGAAGCACAATATAAATGTTGGAG
AAGTATTTAATCTACTATTGGCAGAGGTAGAGAGGGAGGAAACGGGAGAG
CTTGGGGGAATTGAGGGAGGGCGAGGGATAGGGAGGAGCCCTAGTTTGAT
TGGAGGGGAAGGGGTGGAGGGAGAGTTCTTGGGGTTGGTGGGTGAGGAGA
AGGGCTGGAAGGAGCTGCAGCTACAGAGATGGGGAGATGGTTATGCCTGT
ATCGTGAGCTAGGAGTGCGTCGGGACATTTTTGGTGTGAAGATTTTTGAT
TCGATAGGAAAGACAAGCGGGAGAAGGATTGAGAGGGAGGGAATGGGGAG
AGGGGAGAAAAGACATATTTTCGGGGCAAGTTCTCCTCACGTTCGTTCAG
AATGAGTTAGAGGTTGGAGGGGGAGGGATAGGGGAGGGGGGAAGGGAGGG
AAGGGAGGGAGAAGAGGAGAAAATCGGCCACGTTTTGGGGGCAAGTCCGT
ATTGTTCATATAGTCCAGGACAGGGAAGGAAGGGGATACGATGAAAAGGA
GAGGCCTGTGTAACGCTGCTACCATTATTCAATGATCCCAAATGATTGCC
CTTGGGACAAAGACAAGAAGAGGGCAGGGCCTACATTTAAATCCTGAACA
ACAAGGAGCGAACGCCATCGAAGGGAGGAAAAAGGAAGCCTTGAAGCACT
ATATTTGACTTTTACCGGCACA
back to top

Coding sequence (CDS) from alignment at chr24:466186..467707+

>NO24G01750.1 ID=NO24G01750.1|Name=NO24G01750.1|organism=Nannochloropsis oceanica|type=CDS|length=810bp|location=Sequence derived from alignment at chr24:466186..467707+ (Nannochloropsis oceanica)
ATGCCGCCATCGTCCACTTCACCACGTGCACCGCCACCCCTCCTCCCTCC
TTCACCTCGAGGGATACTTCATCGCAAGTTGGCGGTGGTGGGGCATCGGG
GGGCGGGGAAAACCAGCTTGATCCGCCGCTTTGTGGAGAATGCATTTACC
TCCCACCATGAACCCACAATCGAGGCACTCTACCGCCGGGTGCTCGAGAC
CCCCACACCTGCACGAGGCATCGGAAGACGAGGAAGGCAACGAGGGGTGA
AACAGCACGTATGTTGCGACATCGTTGACACGGCGGGGCATACGCATGAG
CAAGCAGAGGAAGTGGACTACTCTCGTTTCCTCTCCCGCAATGCCCTGGT
GGGTGTACATGGCTATGTCCTAGTGTACGATATGACTTCCCGCCAATCTT
TTTGCAAAGTTCAGGAGTTCAATGATGTATTGGTGAGGTTTCAAGGGGGC
AGCCCTGTACCCCGAGTCTTGGTCGCGTGCATGCTTGATCAATGTGCGCA
ACGCAAGGTAGGGAAGGAGGAAGGGAGGAAACTCGCTCGAGCTCTGGGCA
ACATTCCGTTTGTCGAGGTCTCATCGAAGCACAATATAAATGTTGGAGAA
GTATTTAATCTACTATTGGCAGAGGTAGAGAGGGAGGAAACGGGAGAGCT
TGGGGGAATTGAGGGAGGGCGAGGGATAGGGAGGAGCCCTAGTTTGATTG
GAGGGGAAGGGGTGGAGGGAGAGTTCTTGGGGTTGGTGGGTGAGGAGAAG
GGCTGGAAGGAGCTGCAGCTACAGAGATGGGGAGATGGTTATGCCTGTAT
CGTGAGCTAG
back to top
Synonyms
Publications