NO23G01390.2, NO23G01390.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G01390.2
Unique NameNO23G01390.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2240
Alignment locationchr23:506388..509964 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:506388..509964 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO23G01390.2 vs.
Match: EWM22910.1 (hypothetical protein Naga_101154g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 105.5 bits (262), Expect = 4.600e-19
Identity = 60/127 (47.24%), Postives = 78/127 (61.42%), Query Frame = 0 
Query:    8 TVVFVLLASIGSFLFG------LLNDLDVFKPLPAPSLGGETRGGTTT-TTTPPGFVCRTLARETAIGAEDIITITPSILLAGTDDRLRLWENARFGPAKTPQGGLLAIYDDEEEERKEGGKKGEEG 128
            T +F++  S+  FL G      L+ DLDV KP P PS    +  G      TP GF+CRTL RE+ IGAEDI+T+TPS+ + GTDDRLRLWEN  FGP +TPQ     ++    E  +EGG++G  G
Sbjct:    2 TRIFMVTISLVQFLLGSLFLVMLMYDLDVLKPSPRPSERLYSEDGEVHFVPTPSGFICRTLGRESIIGAEDIVTLTPSLFITGTDDRLRLWENPDFGPTRTPQ-----VWFGGREGGREGGREGGGG 123
The following BLAST results are available for this feature:
BLAST of NO23G01390.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22910.14.600e-1947.24hypothetical protein Naga_101154g2, partial [Nanno... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G01390NO23G01390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G01390.2NO23G01390.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G01390.2.cds1NO23G01390.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01390.2.cds2NO23G01390.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01390.2.cds3NO23G01390.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01390.2.cds4NO23G01390.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01390.2.cds5NO23G01390.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01390.2.cds6NO23G01390.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01390.2.cds7NO23G01390.2.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01390.2.cds8NO23G01390.2.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01390.2.cds9NO23G01390.2.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G01390.2 ID=NO23G01390.2|Name=NO23G01390.2|organism=Nannochloropsis oceanica|type=mRNA|length=2240bp
CACTTTCTCAAATCCTTTCATTCACGACTTTTTCCTTCGCCTATGAAGAC
GCTACATCAAACTTCGGGCTCCCAAGCGAGTGAGCCAAAATGGGTAAAGC
GGTGAAGCCCCTGCACAAGGACCGCTAAAATATTGTAAGAGGCAGGCATC
CGTGTGGGAGCGTAGGAAATGCGGCCATCACGCGCTTGTTCTTCGTTCAT
TCGCCGCAGCAATCCTCATCAAGCCACACACCCACAGTGACATGTACAAA
GGCAACAAGAACAGCAGCAGCAATAGCATTGGTAGCGATGTATTCACTAG
ATATAGCAAAGTCCGCTCCTGCAGTCCTCAGTCCGTTATGAAAAGCACTA
GACTCCATCCGCTTGACGACCTCCCCTCCCACTATCCCTTTCGACGCCAC
ATATTATTCACAGACCATCTTCCGTCTATCCAAAATGCCATCGTCCCTCG
TCAAGACGGTGGTTTTTGTACTGCTGGCCTCCATCGGTTCCTTTCTTTTC
GGCTTATTGAACGACTTGGATGTCTTCAAGCCACTGCCGGCGCCGTCGCT
GGGAGGGGAAACAAGAGGGGGGACGACTACCACCACAACACCACCGGGCT
TCGTCTGTCGAACGCTGGCACGGGAAACCGCTATTGGTGCTGAGGACATT
ATTACTATTACGCCTTCTATCCTTCTGGCGGGGACTGACGACAGGCTCCG
GCTGTGGGAAAATGCTCGCTTTGGTCCGGCCAAGACGCCGCAGGGTGGCC
TCCTTGCGATCTACGACGACGAAGAGGAGGAAAGGAAGGAGGGAGGGAAG
AAGGGAGAGGAAGGCATCACGATCGAGCCAGTGCCTCTCGTGAATTTCCC
GGAAGGCATTGCTTTTCATCCGCATGGAATGTACTACCATAGGGAAACCT
CGAAGCTTTTCGTCATCAACCATGCCTACGAGAAAGGCGGCGAGCGCATC
GACGTCTTCCACCTCCCCTTCACCACCATCACCAGCAGCAGGAGCAGAAG
CAGCAGGAGGATGAGGCTCGTGCATGCGAGATGGTTGTATGTCCTGGCTC
CACCTATATTCCAAGCCGAGTGTATGGGCACCCTGAATGACCTCGTTGTC
CTGCACTCCCTCCCTGCCGCTGCGGCTGGTGGGAAGGAGGGAGGGAGGGA
GCCAAGGAGGGAGGACGAGCTGTATGTAACGCATTACCGAGCGTTTCCGG
ACGCGGCGGCGGGACGGTTGGTCCCTGGCAATATCTTGGCTGGTGTGCAC
GACCTGCTCAATTTCTTTAGTATTGTCTCTAGGCGGCGATGGACGCGGGT
GCTGTACTGCAAGGGTAACGTCTGCCGTCCAACGGAAATAAACGGCAAGC
AAGGCGGAGGCGTTCTCTTCAACGGCATCAACGTATCCCCCGACAGAAAA
CGGTTGCTGGTCGCAGACATGAAGTCCGTACAGGTCCTGGAAATCGATCC
CTCCCTCCCTCTCTCCCTCCACCGCCTGGCCCATCTTCCGACTCCTCACC
TCGTGGATAATATCGAGGGCATTCGTTCCGAGACTGAGGGAGGGAGGGAG
GGAGGGGGGGAGGAACTGGAGAGCTACACCTTGGGATCGTGTGGGCATCT
GTGGATGTTCCTGAGGCACAACCTCCATTACGCCGGCCAGGCTCACGGGG
ACCGGGCCATGGTCTACAACATCACGGGCGGAGTGCAGCGTCTCCAGAGG
GAGGGAGGGACGGAGGGAGAGTACGTGGTGAAGGAGGTCCTTCTGCAGGT
GCGTTTTTGGGGGGCCTCTCCAAAGTCAAACGCGACGATGCCCACCCTTG
TCTACATGATGCACGAACCCGTTCTTGCTCCTGCTCAACAACCTCTACTT
CTTTTCAGTCAAACTCTTTGTTTCTCAATATGTTGCTGATTTATCCTCAC
GTTATCTATGAATCGCCACCAGGATGGAAGCGGCTTGAGTGGCGTCAGTG
GTGCTGCCATGCTATCCCGCTTCTCTTCATCGTCGGAAGGGGGGGAAAGG
AGAGAGAGGTACGTGATGGGATCCTGGTCGGACAGGGGTATAATGGTGTG
TGAAAAACAAGAAATGAAGGAGATGAAAGAGGAGGAGGAGGAGGATGGAG
GGGTACAGGAGGGCGAGGGGAAAGAGGAGCTGTGAGTGAATCAAAACAAC
TATGTACATCCAGAATAAGTGCCTTTAAATGAGAAGACGTAAACTGCACA
GGGAGATGTCTCATCTCAGCCATAGTAGCTCATCTTTGTC
back to top

protein sequence of NO23G01390.2

>NO23G01390.2-protein ID=NO23G01390.2-protein|Name=NO23G01390.2|organism=Nannochloropsis oceanica|type=polypeptide|length=485bp
MPSSLVKTVVFVLLASIGSFLFGLLNDLDVFKPLPAPSLGGETRGGTTTT
TTPPGFVCRTLARETAIGAEDIITITPSILLAGTDDRLRLWENARFGPAK
TPQGGLLAIYDDEEEERKEGGKKGEEGITIEPVPLVNFPEGIAFHPHGMY
YHRETSKLFVINHAYEKGGERIDVFHLPFTTITSSRSRSSRRMRLVHARW
LYVLAPPIFQAECMGTLNDLVVLHSLPAAAAGGKEGGREPRREDELYVTH
YRAFPDAAAGRLVPGNILAGVHDLLNFFSIVSRRRWTRVLYCKGNVCRPT
EINGKQGGGVLFNGINVSPDRKRLLVADMKSVQVLEIDPSLPLSLHRLAH
LPTPHLVDNIEGIRSETEGGREGGGEELESYTLGSCGHLWMFLRHNLHYA
GQAHGDRAMVYNITGGVQRLQREGGTEGEYVVKEVLLQVRFWGASPKSNA
TMPTLVYMMHEPVLAPAQQPLLLFSQTLCFSICC*
back to top

mRNA from alignment at chr23:506388..509964+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G01390.2 ID=NO23G01390.2|Name=NO23G01390.2|organism=Nannochloropsis oceanica|type=mRNA|length=3577bp|location=Sequence derived from alignment at chr23:506388..509964+ (Nannochloropsis oceanica)
CACTTTCTCAAATCCTTTCATTCACGACTTTTTCCTTCGCCTATGAAGAC
GCTACATCAAACTTCGGGCTCCCAAGCGAGTGAGCCAAAATGGGTAAAGC
GGTGAAGCCCCTGCACAAGGACCGCTAAAATATTGTAAGAGGCAGGCATC
CGTGTGGGAGCGTAGGAAATGCGGCCATCACGCGCTTGTTCTTCGTTCAT
TCGCCGCAGCAATCCTCATCAAGCCACACACCCACAGTGACATGTACAAA
GGCAACAAGAACAGCAGCAGCAATAGCATTGGTAGCGATGTATTCACTAG
ATATAGCAAAGTCCGCTCCTGCAGTCCTCAGTCCGTTATGAAAAGCACTA
GACTCCATCCGCTTGACGACCTCCCCTCCCACTATCCCTTTCGACGCCAC
ATATTATTCACAGACCATCTTCCGTCTATCCAAAATGCCATCGTCCCTCG
TCAAGACGGTGGTTTTTGTACTGCTGGCCTCCATCGGTTCCTTTCTTTTC
GGCTTATTGAACGACTTGGATGTCTTCAAGCCACTGCCGGCGCCGTCGCT
GGGAGGGGAAACAAGAGGGGGGACGACTACCACCACAACACCACCGGGCT
TCGTCTGTCGAACGCTGGCACGGGAAACCGCTATTGGTAAGAAAGGAAAT
TACTACGAAAGAAAGAAAAAAAGGAGAGAGGTGGAATGGGTGAAGGCGGG
AGCACGTCTTGGTCAACGAGACACGGCAGTCATCCCTCCCTCCTCCCCTC
CCTCCATTTCTTTACTCGATCACAGGTGCTGAGGACATTATTACTATTAC
GCCTTCTATCCTTCTGGCGGGGACTGACGACAGGCTCCGGCTGTGGGAAA
ATGCTCGCTTTGGTCCGGCCAAGACGCCGCAGGCAGGGAGGGAGGGAAGG
AGGGAGGGAAGGCGAGATGGCAAAGGAGTGATGAAGGCGTGTGGAGGTAG
AGTGAGAAAGAGTAACGAAGTGACGGACATGATAATTTTTATCGTGATAC
TTACAGTGTCATTAAATTTTACCTTCCATCCTACAGGGTGGCCTCCTTGC
GATCTACGACGACGAAGAGGAGGAAAGGAAGGAGGGAGGGAAGAAGGGAG
AGGAAGGCATCACGATCGAGCCAGTGCCTCTCGTGAATTTCCCGGAAGGC
ATTGCTTTTCATCCGCATGGAATGTACTACCATAGGTGAGAAGGGAGGGA
GGGAGGTGGAGGATCGGGCAGGTTGACCTGCACGTACAAGGAATAAGGGG
GGGAGAGCAATGGGGGAGATTCAGACGACTGAGAAACATCACACTCACCC
TAGGGAAACCTCGAAGCTTTTCGTCATCAACCATGCCTACGAGAAAGGTA
AGACGCTCCCCCTTTCTTCCTTCCTCCATTCTTCCCACCCTCCCTCCTTT
CCTCCTGCCCTGCCTCCCTCCCTCCCTCCCACCCATCCTCACACCTTTTC
ACCCTCTCTCTCCCTTCTTCTTCATTCCCATCCAGGCGGCGAGCGCATCG
ACGTCTTCCACCTCCCCTTCACCACCATCACCAGCAGCAGGAGCAGAAGC
AGCAGGAGGATGAGGCTCGTGCATGCGAGATGGTTGTATGTCCTGGCTCC
ACCTATATTCCAAGCCGAGTGTATGGGCACCCTGAATGACCTCGTTGTCC
TGCACTCCCTCCCTGCCGCTGCGGCTGGTGGGAAGGAGGGAGGGAGGGAG
CCAAGGAGGGAGGACGAGCTGTATGTAACGCATTACCGAGCGTTTCCGGA
CGCGGCGGCGGGACGGTTGGTCCCTGGCAATATCTTGGCTGGGTAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGAAGGGAATTGAGGGAGGAAGGGAACCTGAGA
ACAAACGGTTGCTGACCATCTCTTCTCCTTCTGTCCCCCCATTTCCTCCC
CTTCCTCCTCCCTTTTTTCCCTCCTCCCTTCCCTCCTTCCTTCCCTCCCT
CCATCCCTCTCTCTCTCGCCTTCCTCCCCTTCTTCCTTCCCTCTTTCCCT
AGTGTGCACGACCTGCTCAATTTCTTTAGTATTGTCTCTAGGCGGCGATG
GACGCGGGTGCTGTACTGCAAGGTAGGTTGATGTGACCTTCCTCTCTCCC
TCCCTTCCTTCCTTCCTTCCTTCCTTCCTCCCTCCCTCCCCCCTCCCTCT
TCTTCAGAGTTCGCTTTTTCCGGTTTCCCGGGACGCAGCAGAGATGCTTT
TCTAACGCTGAGGCTCGTGCTTCCGACCACTCCATCCCCCCTCTCTTATT
TCCACCCTCTCTCCCTCCCCTTCTCGACAGGGTAACGTCTGCCGTCCAAC
GGAAATAAACGGCAAGCAAGGCGGAGGCGTTCTCTTCAACGGCATCAACG
TATCCCCCGACAGAAAACGGTTGCTGGTCGCAGACATGAAGGTAGCCCTC
CCTCATTCTCTCTCTCCATATCTCCCTCCCTCCCTCCATTTGCTTTGCTC
CTTCCTCTTAGCCTTTAGAGTCCCCGAGAAAACCGTATCGTTCCTCCTCC
TTCACCCTCTCCCTCCCTTTCTCCCTCCCTCCCTCTGTAGTCCGTACAGG
TCCTGGAAATCGATCCCTCCCTCCCTCTCTCCCTCCACCGCCTGGCCCAT
CTTCCGACTCCTCACCTCGTGGATAATATCGAGGGCATTCGTTCCGAGAC
TGAGGGAGGGAGGGAGGGAGGGGGGGAGGAACTGGAGAGCTACACCTTGG
GATGTGCGTAGGGGAGGGAGGGAGGGTAGGCGGGAGGGAGGGAGGTAGAA
AGAGGTCACGGACTGGACGATACATGATGAGATCAAAACAGACACCGATA
TATACATTTTTTTACCTTCCTTTCTTCCCTTTACTTACCTCCCTCCCTAC
CTCTCTCCCTACCCTCCCTTGTAGCGTGTGGGCATCTGTGGATGTTCCTG
AGGCACAACCTCCATTACGCCGGCCAGGCTCACGGGGACCGGGCCATGGT
CTACAACATCACGGGCGGAGTGCAGCGTCTCCAGAGGGAGGGAGGGACGG
AGGGAGAGTACGTGGTGAAGGAGGTCCTTCTGCAGGTGCGTTTTTGGGGG
GCCTCTCCAAAGTCAAACGCGACGATGCCCACCCTTGTCTACATGATGCA
CGAACCCGTTCTTGCTCCTGCTCAACAACCTCTACTTCTTTTCAGTCAAA
CTCTTTGTTTCTCAATATGTTGCTGATTTATCCTCACGTTATCTATGAAT
CGCCACCAGGATGGAAGCGGCTTGAGTGGCGTCAGTGGTGCTGCCATGCT
ATCCCGCTTCTCTTCATCGTCGGAAGGGGGGGAAAGGAGAGAGAGGTACG
TGATGGGATCCTGGTCGGACAGGGGTATAATGGTGTGTGAAAAACAAGAA
ATGAAGGAGATGAAAGAGGAGGAGGAGGAGGATGGAGGGGTACAGGAGGG
CGAGGGGAAAGAGGAGCTGTGAGTGAATCAAAACAACTATGTACATCCAG
AATAAGTGCCTTTAAATGAGAAGACGTAAACTGCACAGGGAGATGTCTCA
TCTCAGCCATAGTAGCTCATCTTTGTC
back to top

Coding sequence (CDS) from alignment at chr23:506388..509964+

>NO23G01390.2 ID=NO23G01390.2|Name=NO23G01390.2|organism=Nannochloropsis oceanica|type=CDS|length=1455bp|location=Sequence derived from alignment at chr23:506388..509964+ (Nannochloropsis oceanica)
ATGCCATCGTCCCTCGTCAAGACGGTGGTTTTTGTACTGCTGGCCTCCAT
CGGTTCCTTTCTTTTCGGCTTATTGAACGACTTGGATGTCTTCAAGCCAC
TGCCGGCGCCGTCGCTGGGAGGGGAAACAAGAGGGGGGACGACTACCACC
ACAACACCACCGGGCTTCGTCTGTCGAACGCTGGCACGGGAAACCGCTAT
TGGTGCTGAGGACATTATTACTATTACGCCTTCTATCCTTCTGGCGGGGA
CTGACGACAGGCTCCGGCTGTGGGAAAATGCTCGCTTTGGTCCGGCCAAG
ACGCCGCAGGGTGGCCTCCTTGCGATCTACGACGACGAAGAGGAGGAAAG
GAAGGAGGGAGGGAAGAAGGGAGAGGAAGGCATCACGATCGAGCCAGTGC
CTCTCGTGAATTTCCCGGAAGGCATTGCTTTTCATCCGCATGGAATGTAC
TACCATAGGGAAACCTCGAAGCTTTTCGTCATCAACCATGCCTACGAGAA
AGGCGGCGAGCGCATCGACGTCTTCCACCTCCCCTTCACCACCATCACCA
GCAGCAGGAGCAGAAGCAGCAGGAGGATGAGGCTCGTGCATGCGAGATGG
TTGTATGTCCTGGCTCCACCTATATTCCAAGCCGAGTGTATGGGCACCCT
GAATGACCTCGTTGTCCTGCACTCCCTCCCTGCCGCTGCGGCTGGTGGGA
AGGAGGGAGGGAGGGAGCCAAGGAGGGAGGACGAGCTGTATGTAACGCAT
TACCGAGCGTTTCCGGACGCGGCGGCGGGACGGTTGGTCCCTGGCAATAT
CTTGGCTGGTGTGCACGACCTGCTCAATTTCTTTAGTATTGTCTCTAGGC
GGCGATGGACGCGGGTGCTGTACTGCAAGGGTAACGTCTGCCGTCCAACG
GAAATAAACGGCAAGCAAGGCGGAGGCGTTCTCTTCAACGGCATCAACGT
ATCCCCCGACAGAAAACGGTTGCTGGTCGCAGACATGAAGTCCGTACAGG
TCCTGGAAATCGATCCCTCCCTCCCTCTCTCCCTCCACCGCCTGGCCCAT
CTTCCGACTCCTCACCTCGTGGATAATATCGAGGGCATTCGTTCCGAGAC
TGAGGGAGGGAGGGAGGGAGGGGGGGAGGAACTGGAGAGCTACACCTTGG
GATCGTGTGGGCATCTGTGGATGTTCCTGAGGCACAACCTCCATTACGCC
GGCCAGGCTCACGGGGACCGGGCCATGGTCTACAACATCACGGGCGGAGT
GCAGCGTCTCCAGAGGGAGGGAGGGACGGAGGGAGAGTACGTGGTGAAGG
AGGTCCTTCTGCAGGTGCGTTTTTGGGGGGCCTCTCCAAAGTCAAACGCG
ACGATGCCCACCCTTGTCTACATGATGCACGAACCCGTTCTTGCTCCTGC
TCAACAACCTCTACTTCTTTTCAGTCAAACTCTTTGTTTCTCAATATGTT
GCTGA
back to top
Synonyms
Publications