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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr23 | genome | chr23:178424..181962 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO23G00400.2 vs.
Match: EWM24596.1 (beta-lactamase domain protein [Nannochloropsis gaditana]) HSP 1 Score: 554.3 bits (1427), Expect = 3.300e-154 Identity = 257/398 (64.57%), Postives = 314/398 (78.89%), Query Frame = 0
Query: 27 VTDLEDFGSVEVTNRCCGAMTCRVLAPDIFLEAKQGSGPSDTSTADSTVPTKNFTYVGRKIKNEDELRQVRRAVKACPFHALRLRRGSKGTTVMQGDVNDAYPLPIGPHGEVFLLGYYTPKNAGASCYLIVRPKGGNVLIDAPLPDASLLERIRNLGEVSYLVFTHKDHTAFHREWFQALPGVQRVIHVDDVVQERKHFFFPYTGEVEMKIAGSKSLSLDNEGDVLLIPIPGHTPGSLAILYRNHYLFTGDSLHYSRPRGHLVSSRLHCWSDWEQQQKSLKALEEYDWLHILPGHGDPKEFENLKEGKMSLRQGLGWMEEQPRGYTSMGRFIPWLQLKTNN--AGMLGKVPRWVRKGMEWVVAPVGAPGTRDRARVWEWMRYAFFAWLVLKLWLRVLA 423
+ DLEDFGSVEVT++CCGAMTCRVLAP+IF EAK GS SDT S+ P NFTYVGRKI++E ELRQVRRAVKACPFHAL+LRRG KG TVM D N AYP+ + G V+LLG+Y+PKNAGA+CYLIVRP GGNVL+D P+P+ASL+ERI+ LG YLVFTHKDHTAF +EW A P +QRV+H DVV+ RKHFFFPYTG+VE+K+AG K+ LD EGD++LIPIPGH+PGSLAIL++ HYLFTGDSL YSRPRGHLVSSRLHCWS WE+Q+ SL+AL+ Y W H+LPGHG+PK F ++ + SL + + WM EQP G TSM F+ WLQL+T++ + + +PRW RKG+E +VAP GAPG R+RAR +W R A W++LK+ VLA
Sbjct: 39 IADLEDFGSVEVTDKCCGAMTCRVLAPEIFHEAKLGSSFSDTH--GSSTPD-NFTYVGRKIRDETELRQVRRAVKACPFHALKLRRGGKGATVMDEDFNAAYPIQVDQSGAVYLLGHYSPKNAGATCYLIVRPNGGNVLVDCPVPNASLVERIKELGGAKYLVFTHKDHTAFTKEWKMAFPAIQRVLHAGDVVENRKHFFFPYTGDVEIKLAGGKAQPLDKEGDIVLIPIPGHSPGSLAILFQEHYLFTGDSLFYSRPRGHLVSSRLHCWSSWEEQRASLQALDSYQWAHVLPGHGEPKRFSGKEDAQASLARAIEWMGEQPGGSTSMASFVCWLQLRTHSGQSRFMRAIPRWARKGIERLVAPAGAPGARERARALKWARSAVMMWILLKVLPNVLA 433
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO23G00400.2 ID=NO23G00400.2|Name=NO23G00400.2|organism=Nannochloropsis oceanica|type=mRNA|length=3341bp AACCTCCTCCCCCTTCCCCACTTGCAATAGACCGCGTTCCATTTCCCCCC TCATTCACACACAGAGCATCAAGATCACCACTAGAAGCCTATACTGGCAG CGATATAAAACCCAAAGCGTCTTCGTCGCGTGAGTGATTTGTCTGTACAT CTCGCATCATCATCGAGGCAGTAGACCCATCGATCGACGTACTTAAAATT TTGCACCCCGTACCACACAACCGCACAGCCAACATCCCGACTCTCAGACC TGCATCACACCATGCACGAGGACCATCCACACTCATCGCTGCCGTCATCG TTTAGTGGAGAATCACAAGCGTCAGCCTCCGGGCCTCCGGTGACAGACCT TGAGGACTTCGGCTCCGTGGAGGTCACGAACCGATGCTGCGGAGCCATGA CTTGCCGCGTCTTGGCCCCAGATATCTTCCTGGAAGCCAAGCAAGGCAGC GGTCCGTCAGATACCTCAACGGCTGATAGCACCGTGCCTACTAAAAACTT TACGTACGTTGGACGGAAGATCAAGAATGAGGACGAGCTGCGCCAGGTTC GACGGGCCGTCAAAGCTTGTCCTTTTCATGCTCTGCGCTTGCGACGTGGC TCAAAAGGCACGACAGTGATGCAAGGGGACGTGAATGATGCATACCCCTT GCCAATAGGTCCGCACGGTGAGGTGTTTTTGCTTGGATACTACACCCCTA AGAATGCGGGAGCTTCTTGTTACTTGATTGTCCGCCCGAAGGGCGGTAAT GTCTTGATCGATGCCCCATTGCCGGATGCAAGCCTCCTGGAGCGAATCAG AAACTTGGGGGAGGTAAGCTATCTGGTATTTACTCACAAGGACCACACGG CGTTTCATCGTGAGTGGTTTCAGGCCTTGCCGGGCGTGCAGCGGGTCATA CATGTGGACGATGTGGTGCAGGAGAGGAAGCACTTTTTTTTCCCATACAC TGGCGAAGTGGAGATGAAAATTGCGGGTAGCAAAAGTTTATCACTCGATA ATGAAGGTGACGTTTTGCTAATCCCCATTCCAGGGCACACACCCGGTAGC CTCGCGATTCTCTATCGCAACCACTACCTCTTTACGGGGGACTCCCTCCA CTACTCCCGCCCACGTGGACACCTCGTCTCCTCACGCTTGCACTGCTGGT CCGATTGGGAACAACAACAAAAGAGCCTGAAGGCCCTCGAGGAATATGAT TGGTTACACATTCTGCCGGGGCATGGGGACCCGAAAGAATTTGAAAATTT GAAAGAGGGGAAAATGTCGTTACGGCAAGGGTTGGGTTGGATGGAGGAGC AGCCAAGAGGGTACACAAGCATGGGCCGTTTCATACCGTGGTTGCAACTG AAGACAAATAATGCAGGGATGCTGGGAAAGGTACCGCGATGGGTACGCAA GGGGATGGAGTGGGTGGTCGCTCCTGTGGGGGCCCCGGGAACGAGGGACA GGGCGAGGGTGTGGGAATGGATGAGGTACGCCTTTTTTGCATGGTTGGTG CTGAAGCTGTGGCTGCGGGTGCTTGCGTGATGAGGGAGAATACGGGATCG CCGGTGGATCCGGACACACCGGCGACGGTTGTCTGTCGCTTTTGCTGCTT GTTTTATCCCCGTGTTTATGTGTGTGTTTATGCCACACACGCCATGAGCG TGAAATATAACGAAGCATAAAAGGGACGAGGCCGAGATTCGTTCGTATGG ACAAGAGTCTGTTGTACATGAAAGGGATACCATGATAGAATCATGGAATT AAAATATGGAGACGAAGGAAAATAAAGGCAGAAGGCATCTACCGTGTGTC CAAAGCGCTGTAGAAAAAGGGAAGAAAGACGTAAATAAGATACATGGGCC CGGTAGGGAACCACTTTATTTTGCCGATGTATGCCTATTGGTCCTCTCTG GTCGTCGGAGCTTTAATCCCTTCTCGTTTATTCCAGGCAGTAGCTGTTGC TTTCTTTTCTTTTTAATTGAACTTTCTTCCCTTCTTTTATCCTCTTCATC TTCGCTAGCGCTTCTTCGGTCCCATATCCCCTCAAAACTCATATACATAC ATATATACATACACACGCAAACACCGACCCTCCGAATAAATAACGATAAG CGCGTGGACAAGTGAAAGGTCACGGGGAAGCTTAGCATCATCTCTTTCTC TTCGAAGATGACTTTTAGTTCGATTCGTCTATGACAGCTACTGTTGCTGC TGCTGCGGCTCCATCACCACCACCACCACTCCTCCCTCCTTGCACCTTCC CTTTGCCTTCACCCACCTTCAATAACGAGGACGGTGACGAGGACAGCGAG GAGGACGCAACCGTGGAGAAAGATGAAAGCAATGCTTCAATATTCTCCAA GGCCCTCTGCACCCCTTCCATCATCAACCTTTCCTCCCCCTCGCCCTCCC TCCCTTCCTCCCCTTCGAGGGCATCCCTGCCCGCCAGCTTCTTTGCAAGT GCTATCTGTTGCCATACACCCACACAAGAAGGCACCGAGGACGAGGGCGA GGAAGAAAGGGAGGAAGAGGTGGATGAAGCCAAAAAATCCCCGCGCAAGA GCAACGCGGTCGACTTCTCCGAATGGTGTAACAGAGACCACAGGGCGACC GTTGCCGGGAAGCGAATTTGAATTTTTGAATGCGTCATCGCGTCACACAC CAGAAATCTCAACAACGTCCCAGAGGCCAAAACGCTAGCCTTTCCTCCCC CCTTGCCCCCCCCTCCTCGTAAGAAGGAGAGGTTTCGCAGAAGGTAGCAG AGTTGTGCCGTGAGCTCTTCAACCTCTTCTTCCTTCCCATCGTCCCATCC TCCCTCCTTCCCTTTGTCCTTCTCGCCTTCTTTGATGAATAAAACGACGT CTTCCAGAACGGAGGGTAGGAGGGTGGGAGGGAGGTGCCGGTGGAGGAGC TGTTGCCCTTCTGCGGCCAGGGTGAGATTGACGAGCAGTTTAAAGAGACC CAGTAGGCGCACCCATCCCTCCTTCCCGACCTCTGCCGGTCGGCGACGAC GATGGGCCGGAGAAGGGGTGAGGAGGAGGGAGGGAACGAGGGAGAGGAGG GAGGAGGCCAGGAAAGAGGAAGACGGGGGGGAAGAGGAAGGGAGGAAAAG GTGGTGGCGTCCGGCGGGGAGGAGGGAGAGGGAACGAAGGAGGGAGAGGA GGGGATGAGCGATGGAGGGGGGGAGGGAAGGGCGGAGGGCGAGGCGAAGG AGGGAGGGAAGAAAGGAGGAAGAGGCGGAGGAGGAGGAGGAAAAGTGAAG GAGGGCCTGCTTGGCCACGTCATGGAAAGCTACCAAATTGCAGAGCATGG AGAGGAGGGCGGCGAGGAGGGAGGGGGGCAGGGAGGGAGGG back to topprotein sequence of NO23G00400.2 >NO23G00400.2-protein ID=NO23G00400.2-protein|Name=NO23G00400.2|organism=Nannochloropsis oceanica|type=polypeptide|length=423bp MHEDHPHSSLPSSFSGESQASASGPPVTDLEDFGSVEVTNRCCGAMTCRV LAPDIFLEAKQGSGPSDTSTADSTVPTKNFTYVGRKIKNEDELRQVRRAV KACPFHALRLRRGSKGTTVMQGDVNDAYPLPIGPHGEVFLLGYYTPKNAG ASCYLIVRPKGGNVLIDAPLPDASLLERIRNLGEVSYLVFTHKDHTAFHR EWFQALPGVQRVIHVDDVVQERKHFFFPYTGEVEMKIAGSKSLSLDNEGD VLLIPIPGHTPGSLAILYRNHYLFTGDSLHYSRPRGHLVSSRLHCWSDWE QQQKSLKALEEYDWLHILPGHGDPKEFENLKEGKMSLRQGLGWMEEQPRG YTSMGRFIPWLQLKTNNAGMLGKVPRWVRKGMEWVVAPVGAPGTRDRARV WEWMRYAFFAWLVLKLWLRVLA* back to topmRNA from alignment at chr23:178424..181962- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO23G00400.2 ID=NO23G00400.2|Name=NO23G00400.2|organism=Nannochloropsis oceanica|type=mRNA|length=3539bp|location=Sequence derived from alignment at chr23:178424..181962- (Nannochloropsis oceanica) AACCTCCTCCCCCTTCCCCACTTGCAATAGACCGCGTTCCATTTCCCCCC
TCATTCACACACAGAGCATCAAGATCACCACTAGAAGCCTATACTGGCAG
CGATATAAAACCCAAAGCGTCTTCGTCGCGTGAGTGATTTGTCTGTACAT
CTCGCATCATCATCGAGGCAGTAGACCCATCGATCGACGTACTTAAAATT
TTGCACCCCGTACCACACAACCGCACAGCCAACATCCCGACTCTCAGACC
TGCATCACACCATGCACGAGGACCATCCACACTCATCGCTGCCGTCATCG
TTTAGTGGAGAATCACAAGCGTCAGCCTCCGGGCCTCCGGTGACAGACCT
TGAGGACTTCGGCTCCGTGGAGGTCACGAACCGATGCTGCGGAGCCATGA
CTTGCCGCGTCTTGGCCCCAGATATCTTCCTGGAAGCCAAGCAAGGCAGC
GGTCCGTCAGATACCTCAACGGCTGATAGCACCGTGCCTACTAAAAACTT
TACGTACGTTGGACGGAAGATCAAGAATGAGGACGAGCTGCGCCAGGTTC
GACGGGCCGTCAAAGCTTGTCCTTTTCATGCTCTGCGCTTGCGACGTGGC
TCAAAAGGCACGACAGTGATGCAAGGGGACGTGAATGATGCATACCCCTT
GCCAATAGGTCCGCACGGTGAGGTGTTTTTGCTTGGATACTACACCCCTA
AGAATGCGGGAGCTTCTTGTTACTTGATTGTCCGCCCGAAGGGCGGTAAT
GTCTTGATCGATGCCCCATTGCCGGATGCAAGCCTCCTGGAGCGAATCAG
AAACTTGGGGGAGGTAAGCTATCTGGTATTTACTCACAAGGACCACACGG
CGTTTCATCGTGAGTGGTTTCAGGCCTTGCCGGGCGTGCAGCGGGTCATA
CATGTGGACGATGTGGTGCAGGAGAGGAAGCACTTTTTTTTCCCATACAC
TGGCGAAGTGGAGATGAAAATTGGTACGTTTTGACACAGCATTATAAGGA
AGAGAATAAGGAGGAGGAGACGTTGAATAGAAATTTTGTCCTTGCTCGGA
ATAGGATGTCGCCAAAGCAGCACTAACAGGAATTTTTTAACACATACACA
CACAAGCACATACTCACTCTCCCCTTTACTCTCCACCACCACCATCATCA
CACCTTAAACACATAACACAGCGGGTAGCAAAAGTTTATCACTCGATAAT
GAAGGTGACGTTTTGCTAATCCCCATTCCAGGGCACACACCCGGTAGCCT
CGCGATTCTCTATCGCAACCACTACCTCTTTACGGGGGACTCCCTCCACT
ACTCCCGCCCACGTGGACACCTCGTCTCCTCACGCTTGCACTGCTGGTCC
GATTGGGAACAACAACAAAAGAGCCTGAAGGCCCTCGAGGAATATGATTG
GTTACACATTCTGCCGGGGCATGGGGACCCGAAAGAATTTGAAAATTTGA
AAGAGGGGAAAATGTCGTTACGGCAAGGGTTGGGTTGGATGGAGGAGCAG
CCAAGAGGGTACACAAGCATGGGCCGTTTCATACCGTGGTTGCAACTGAA
GACAAATAATGCAGGGATGCTGGGAAAGGTACCGCGATGGGTACGCAAGG
GGATGGAGTGGGTGGTCGCTCCTGTGGGGGCCCCGGGAACGAGGGACAGG
GCGAGGGTGTGGGAATGGATGAGGTACGCCTTTTTTGCATGGTTGGTGCT
GAAGCTGTGGCTGCGGGTGCTTGCGTGATGAGGGAGAATACGGGATCGCC
GGTGGATCCGGACACACCGGCGACGGTTGTCTGTCGCTTTTGCTGCTTGT
TTTATCCCCGTGTTTATGTGTGTGTTTATGCCACACACGCCATGAGCGTG
AAATATAACGAAGCATAAAAGGGACGAGGCCGAGATTCGTTCGTATGGAC
AAGAGTCTGTTGTACATGAAAGGGATACCATGATAGAATCATGGAATTAA
AATATGGAGACGAAGGAAAATAAAGGCAGAAGGCATCTACCGTGTGTCCA
AAGCGCTGTAGAAAAAGGGAAGAAAGACGTAAATAAGATACATGGGCCCG
GTAGGGAACCACTTTATTTTGCCGATGTATGCCTATTGGTCCTCTCTGGT
CGTCGGAGCTTTAATCCCTTCTCGTTTATTCCAGGCAGTAGCTGTTGCTT
TCTTTTCTTTTTAATTGAACTTTCTTCCCTTCTTTTATCCTCTTCATCTT
CGCTAGCGCTTCTTCGGTCCCATATCCCCTCAAAACTCATATACATACAT
ATATACATACACACGCAAACACCGACCCTCCGAATAAATAACGATAAGCG
CGTGGACAAGTGAAAGGTCACGGGGAAGCTTAGCATCATCTCTTTCTCTT
CGAAGATGACTTTTAGTTCGATTCGTCTATGACAGCTACTGTTGCTGCTG
CTGCGGCTCCATCACCACCACCACCACTCCTCCCTCCTTGCACCTTCCCT
TTGCCTTCACCCACCTTCAATAACGAGGACGGTGACGAGGACAGCGAGGA
GGACGCAACCGTGGAGAAAGATGAAAGCAATGCTTCAATATTCTCCAAGG
CCCTCTGCACCCCTTCCATCATCAACCTTTCCTCCCCCTCGCCCTCCCTC
CCTTCCTCCCCTTCGAGGGCATCCCTGCCCGCCAGCTTCTTTGCAAGTGC
TATCTGTTGCCATACACCCACACAAGAAGGCACCGAGGACGAGGGCGAGG
AAGAAAGGGAGGAAGAGGTGGATGAAGCCAAAAAATCCCCGCGCAAGAGC
AACGCGGTCGACTTCTCCGAATGGTGTAACAGAGACCACAGGGCGACCGT
TGCCGGGAAGCGAATTTGAATTTTTGAATGCGTCATCGCGTCACACACCA
GAAATCTCAACAACGTCCCAGAGGCCAAAACGCTAGCCTTTCCTCCCCCC
TTGCCCCCCCCTCCTCGTAAGAAGGAGAGGTTTCGCAGAAGGTAGCAGAG
TTGTGCCGTGAGCTCTTCAACCTCTTCTTCCTTCCCATCGTCCCATCCTC
CCTCCTTCCCTTTGTCCTTCTCGCCTTCTTTGATGAATAAAACGACGTCT
TCCAGAACGGAGGGTAGGAGGGTGGGAGGGAGGTGCCGGTGGAGGAGCTG
TTGCCCTTCTGCGGCCAGGGTGAGATTGACGAGCAGTTTAAAGAGACCCA
GTAGGCGCACCCATCCCTCCTTCCCGACCTCTGCCGGTCGGCGACGACGA
TGGGCCGGAGAAGGGGTGAGGAGGAGGGAGGGAACGAGGGAGAGGAGGGA
GGAGGCCAGGAAAGAGGAAGACGGGGGGGAAGAGGAAGGGAGGAAAAGGT
GGTGGCGTCCGGCGGGGAGGAGGGAGAGGGAACGAAGGAGGGAGAGGAGG
GGATGAGCGATGGAGGGGGGGAGGGAAGGGCGGAGGGCGAGGCGAAGGAG
GGAGGGAAGAAAGGAGGAAGAGGCGGAGGAGGAGGAGGAAAAGTGAAGGA
GGGCCTGCTTGGCCACGTCATGGAAAGCTACCAAATTGCAGAGCATGGAG
AGGAGGGCGGCGAGGAGGGAGGGGGGCAGGGAGGGAGGG back to topCoding sequence (CDS) from alignment at chr23:178424..181962- >NO23G00400.2 ID=NO23G00400.2|Name=NO23G00400.2|organism=Nannochloropsis oceanica|type=CDS|length=1269bp|location=Sequence derived from alignment at chr23:178424..181962- (Nannochloropsis oceanica) ATGCACGAGGACCATCCACACTCATCGCTGCCGTCATCGTTTAGTGGAGA ATCACAAGCGTCAGCCTCCGGGCCTCCGGTGACAGACCTTGAGGACTTCG GCTCCGTGGAGGTCACGAACCGATGCTGCGGAGCCATGACTTGCCGCGTC TTGGCCCCAGATATCTTCCTGGAAGCCAAGCAAGGCAGCGGTCCGTCAGA TACCTCAACGGCTGATAGCACCGTGCCTACTAAAAACTTTACGTACGTTG GACGGAAGATCAAGAATGAGGACGAGCTGCGCCAGGTTCGACGGGCCGTC AAAGCTTGTCCTTTTCATGCTCTGCGCTTGCGACGTGGCTCAAAAGGCAC GACAGTGATGCAAGGGGACGTGAATGATGCATACCCCTTGCCAATAGGTC CGCACGGTGAGGTGTTTTTGCTTGGATACTACACCCCTAAGAATGCGGGA GCTTCTTGTTACTTGATTGTCCGCCCGAAGGGCGGTAATGTCTTGATCGA TGCCCCATTGCCGGATGCAAGCCTCCTGGAGCGAATCAGAAACTTGGGGG AGGTAAGCTATCTGGTATTTACTCACAAGGACCACACGGCGTTTCATCGT GAGTGGTTTCAGGCCTTGCCGGGCGTGCAGCGGGTCATACATGTGGACGA TGTGGTGCAGGAGAGGAAGCACTTTTTTTTCCCATACACTGGCGAAGTGG AGATGAAAATTGCGGGTAGCAAAAGTTTATCACTCGATAATGAAGGTGAC GTTTTGCTAATCCCCATTCCAGGGCACACACCCGGTAGCCTCGCGATTCT CTATCGCAACCACTACCTCTTTACGGGGGACTCCCTCCACTACTCCCGCC CACGTGGACACCTCGTCTCCTCACGCTTGCACTGCTGGTCCGATTGGGAA CAACAACAAAAGAGCCTGAAGGCCCTCGAGGAATATGATTGGTTACACAT TCTGCCGGGGCATGGGGACCCGAAAGAATTTGAAAATTTGAAAGAGGGGA AAATGTCGTTACGGCAAGGGTTGGGTTGGATGGAGGAGCAGCCAAGAGGG TACACAAGCATGGGCCGTTTCATACCGTGGTTGCAACTGAAGACAAATAA TGCAGGGATGCTGGGAAAGGTACCGCGATGGGTACGCAAGGGGATGGAGT GGGTGGTCGCTCCTGTGGGGGCCCCGGGAACGAGGGACAGGGCGAGGGTG TGGGAATGGATGAGGTACGCCTTTTTTGCATGGTTGGTGCTGAAGCTGTG GCTGCGGGTGCTTGCGTGA back to top
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