NO22G01680.1, NO22G01680.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G01680.1
Unique NameNO22G01680.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length561
Alignment locationchr22:488881..489441 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:488881..489441 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G01680.1 vs.
Match: XP_005854123.1 (hypothetical protein NGA_2041000 [Nannochloropsis gaditana CCMP526]; EKU22234.1 hypothetical protein NGA_2041000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 195.3 bits (495), Expect = 1.700e-46
Identity = 105/179 (58.66%), Postives = 125/179 (69.83%), Query Frame = 0 
Query:   14 LSFRQGLPTDAPLIRQSMRDARMNPTFLNPQNFIVAEQGSQGKEKETGSATVVGFGQVRPVAGANEHVWELASVYVLPAAREQGVGSQIVSKLVQNF---------CNTDKEGASPRRLVLLTLADTASFYIPHSFGVVPDPVQAQPPLPPILVLEFLAGSVVARLSRGLGTKLVVMEL 184
            L FR GLPTD PLIRQSM +ARMNP FL P+ F +AE    G    TG AT  GFGQ+RP+ G    V ELASVYVLPA+R+Q +GS+I+++LV+NF           +  +     RLVLLTLADTA FY  H F V+PDPV+A+PPLP + VLE+LAGSVVARLSRG  TKLV MEL
Sbjct:   33 LHFRPGLPTDNPLIRQSMLEARMNPAFLKPEYFTIAEH--PGPNAGTGRATTAGFGQIRPILGTGGQVCELASVYVLPASRKQRIGSRIIARLVENFRADNSRARQVPSSSQSVPTPRLVLLTLADTAPFYSSHGFFVLPDPVRAKPPLPMLFVLEYLAGSVVARLSRGPATKLVCMEL 209
The following BLAST results are available for this feature:
BLAST of NO22G01680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854123.11.700e-4658.66hypothetical protein NGA_2041000 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G01680NO22G01680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G01680.1NO22G01680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G01680.1.cds1NO22G01680.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G01680.1 ID=NO22G01680.1|Name=NO22G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=561bp
ATGATCCATGCCCGCTGTTCGGCCTCATGTCCTTTGGAGCTCAGCTTTCG
CCAAGGCCTCCCTACGGATGCACCACTCATCCGCCAAAGTATGCGAGATG
CGCGTATGAATCCTACATTTCTCAACCCCCAAAATTTTATCGTGGCGGAG
CAGGGCAGCCAAGGGAAAGAGAAAGAGACGGGTAGTGCGACGGTAGTCGG
GTTCGGACAAGTCCGTCCTGTTGCCGGCGCAAACGAGCATGTGTGGGAGC
TGGCGTCTGTGTATGTTCTCCCTGCAGCACGAGAACAAGGCGTGGGCTCC
CAGATTGTCTCAAAATTAGTGCAGAATTTCTGCAATACCGACAAGGAAGG
AGCCTCACCCCGTCGGCTGGTCCTCCTCACACTGGCTGACACCGCCTCTT
TCTACATCCCCCATTCCTTTGGGGTGGTACCTGACCCGGTGCAAGCACAA
CCACCATTACCACCCATCTTAGTCCTTGAATTTCTGGCTGGCTCGGTGGT
GGCTCGATTGTCAAGAGGGCTGGGCACGAAGTTGGTGGTCATGGAGCTGG
TCGGGAAGTAG
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protein sequence of NO22G01680.1

>NO22G01680.1-protein ID=NO22G01680.1-protein|Name=NO22G01680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=187bp
MIHARCSASCPLELSFRQGLPTDAPLIRQSMRDARMNPTFLNPQNFIVAE
QGSQGKEKETGSATVVGFGQVRPVAGANEHVWELASVYVLPAAREQGVGS
QIVSKLVQNFCNTDKEGASPRRLVLLTLADTASFYIPHSFGVVPDPVQAQ
PPLPPILVLEFLAGSVVARLSRGLGTKLVVMELVGK*
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mRNA from alignment at chr22:488881..489441-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G01680.1 ID=NO22G01680.1|Name=NO22G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=561bp|location=Sequence derived from alignment at chr22:488881..489441- (Nannochloropsis oceanica)
ATGATCCATGCCCGCTGTTCGGCCTCATGTCCTTTGGAGCTCAGCTTTCG
CCAAGGCCTCCCTACGGATGCACCACTCATCCGCCAAAGTATGCGAGATG
CGCGTATGAATCCTACATTTCTCAACCCCCAAAATTTTATCGTGGCGGAG
CAGGGCAGCCAAGGGAAAGAGAAAGAGACGGGTAGTGCGACGGTAGTCGG
GTTCGGACAAGTCCGTCCTGTTGCCGGCGCAAACGAGCATGTGTGGGAGC
TGGCGTCTGTGTATGTTCTCCCTGCAGCACGAGAACAAGGCGTGGGCTCC
CAGATTGTCTCAAAATTAGTGCAGAATTTCTGCAATACCGACAAGGAAGG
AGCCTCACCCCGTCGGCTGGTCCTCCTCACACTGGCTGACACCGCCTCTT
TCTACATCCCCCATTCCTTTGGGGTGGTACCTGACCCGGTGCAAGCACAA
CCACCATTACCACCCATCTTAGTCCTTGAATTTCTGGCTGGCTCGGTGGT
GGCTCGATTGTCAAGAGGGCTGGGCACGAAGTTGGTGGTCATGGAGCTGG
TCGGGAAGTAG
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Coding sequence (CDS) from alignment at chr22:488881..489441-

>NO22G01680.1 ID=NO22G01680.1|Name=NO22G01680.1|organism=Nannochloropsis oceanica|type=CDS|length=561bp|location=Sequence derived from alignment at chr22:488881..489441- (Nannochloropsis oceanica)
ATGATCCATGCCCGCTGTTCGGCCTCATGTCCTTTGGAGCTCAGCTTTCG
CCAAGGCCTCCCTACGGATGCACCACTCATCCGCCAAAGTATGCGAGATG
CGCGTATGAATCCTACATTTCTCAACCCCCAAAATTTTATCGTGGCGGAG
CAGGGCAGCCAAGGGAAAGAGAAAGAGACGGGTAGTGCGACGGTAGTCGG
GTTCGGACAAGTCCGTCCTGTTGCCGGCGCAAACGAGCATGTGTGGGAGC
TGGCGTCTGTGTATGTTCTCCCTGCAGCACGAGAACAAGGCGTGGGCTCC
CAGATTGTCTCAAAATTAGTGCAGAATTTCTGCAATACCGACAAGGAAGG
AGCCTCACCCCGTCGGCTGGTCCTCCTCACACTGGCTGACACCGCCTCTT
TCTACATCCCCCATTCCTTTGGGGTGGTACCTGACCCGGTGCAAGCACAA
CCACCATTACCACCCATCTTAGTCCTTGAATTTCTGGCTGGCTCGGTGGT
GGCTCGATTGTCAAGAGGGCTGGGCACGAAGTTGGTGGTCATGGAGCTGG
TCGGGAAGTAG
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Synonyms
Publications