NO21G00750.1, NO21G00750.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO21G00750.1
Unique Name	NO21G00750.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2484
Alignment location	chr21:254324..256807 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr21	genome	chr21:254324..256807 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO21G00750.1 vs.

BLAST of NO21G00750.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO21G00750	NO21G00750	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO21G00750.1	NO21G00750.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO21G00750.1.cds1	NO21G00750.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr21:254324..256807-
coding sequence from alignment at chr21:254324..256807-

mRNA sequence

>NO21G00750.1 ID=NO21G00750.1|Name=NO21G00750.1|organism=Nannochloropsis oceanica|type=mRNA|length=2484bp
ATTCGATTCGCCGTTGAGGAAAACCATTTTTCCTCCACACGCACGCGCCA
CACTACGACACACGCACCGTGGTCGTGCACCTTTTAAGAACTTGATAGCG
GAATGTCAAGAATTTGTAGTCCGGTGTATTATTTCGTCCTGGCCTCCAAA
ATTATTTGGGACGCGCCGCACAATGCAATGGGCCGGTGTCTACTACTACG
TTGCCAACGCTTGTTCTCCTGCCATCCCTTCTCACCAGCCCTTACAAGAT
CGCACCCTCGAGACACAGTCCACAGCCAATAAAGAACAATTAAAACGCAA
TGAGCAGCGGGGCCGGCGCAGGTGGCGGTCGGGTGGACAAGCGTTCGTCG
TCATCTTCGTCCATGCTGGCGCGGGGCAAGGCGTTCTTGCGTAGCTTCTC
AGGTGGGGACCAGCCTATCGTTGCAGATGCCGCTGGCGGCAGCAGTGGCG
GCCAACCATCCCGTCAGCAGCTCTACCGCCAGCAGCCGCGTCTATCCGTC
CCTCCCGCACCGACGATGGTGAATGGAGCAGCAGCTGCAGGAGGAAGAGC
AAGGAAGAAAGGCATACTAGCTACCGTTGACTTCCCATGCACAGCAGCCG
AATCAGCATCAGCAGGAAATACGTCTTCTTGCCATTCGTCTTCTGCATCT
TCAGCGACTTGCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
TTACAACCACGAGGGAGACCACCACCCCAACGACCAAGAGGAAGACGATG
ATCCGTTTGCCGGGCCAATCAGAGTTAAGATCACCACACCTTCCCGTGGC
GGCGAAGGGGAAGGAAGACTAGCTGCTTGGTTGGCCTCACCAAGGTTGCT
GCTGTCTAGAGGAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGG
AGGAGGAGGAATGGGAGGAAGGAGAGTGGGAGGGGGAGATAGATGTAGGA
GAAATAGATTATGGAGAGGAAGAAGATGAGGAAGATGAGGATGAGGCGCC
ATTTGACCCCCGCAAGGCTCACGAAACCTTTATCTGGCGAGCGCTGCAAG
GCTCGCCGGTGGTCGGAACTGGCAGCAACTCTGAATGTAGCAGCAGCAGC
AGCACCAGTGCAACCACGTCCACCCAATTTAGAAAGTCCCTGAAATGGGC
CGATGAGGACGGGGGCGAGCTGAATTGTGTGCAGTACTTCGACAAGAACG
CCGAGCCATCTCAGGTCCTCCGCATGATGCTTGCTGCCGATGCCCGTGCG
GAAGGCGCCCCTGGGAGTGGGCGAGCCGCCATGGGTCGGGATGACATTGT
CAAGAATCTTGAGCCGTACCTGAAGCAATTAAAAGGCAACGTCCGGGAGG
TCCAGCCGGTTAAACTCATGAGGAACGGTGAAACACGCGCGATACTGATA
GCCGGGAGGGGGCCCGTGAGGATGAGGGTGGGGGTAGGCATTGTGTGGAT
GGGCGGTCTAATCAAACACCTGAGAATGATTAAGAACCCCTCCGCCGAAT
TTTTAGAAGACGAGGCTCTCCGTTCCTCCCTCCCTCCCTCCCTGCCCCCT
CCATCTGTGGTGGCCGCCGGACGCCCTATTCCTCCTCCTCTCCCTTCCCG
CGGTGGGACAGCAGCACCATCACCTTGCCACGAGCAGCACCACCCTTCCT
CCCCTTCCTCCTCCTCGCCCCCCTTCACCACCCCCCGATCCACCGAATCC
GAGCTCCTCCTCCTCTCCCCCCCCTACCTCATTCCTCGCCCTGCGTCCTT
CCCTCCCCCCACCCTGACCGTTCAAGTCATATCAGCCCTCAATCTGAAGA
GCTCGGCCCAATTGCCACGACCGGTCAATCCTTACGTAAAATTAAGGCTG
GGAGGAAGGGAGGGAAGGACGAATGTGCTGACCAACACCAAGAACCCTGT
GTGGGCGGGTACGAGGGAGGGCCTGCTTAGAGGAGTAGGAGTAGGAGGAA
GAGGAGGAGGAGGAGGGGAGGGGGTAGGAGGAGGAGGGAATGTCTTCCGT
TTTCCGGCCGAGGACCCAAATGCCTTGTTGAAGGTGACAGTGGGGGATTG
GAAGCTAGGAAAAAACGTGTGGATTGCGCGCCTGGCCATTCCCCTGGCAT
CGATCGAAGTCTGCCCCCCCACCTCCGCCCTCCAGCCCTCCTTTAAGAGG
CCAGGACGCGGCGGAGGACAAGGGGGGGGGAGGACGTGATGGAGGGAGGG
GTGACGAAGGAATTTCAATTGCGTCTGCGTGTGTCGAGGTTCGGGACGAG
GATCGAAAAGGAGGGGGTCAGCGAGGCCAAGTTAACGCTGAAATTAAAAT
ATGAATTCTGGGAACGATCGTGGACCCTGGACGAGCTGAAAGCACGGGAC
GAAGAGAGGCTGAGGCAGGAGGAAGAGGAAGAGGAGGAGGAGGAGGAAAG
GGGGAGGAGCGGAGGAGTGGCCGTGGCTGGAGGATGGAGGAGAGAGGGAG
GAAAAGGAGGGAGGGGAAGAGGGAGGGAGGGGGC

protein sequence of NO21G00750.1

>NO21G00750.1-protein ID=NO21G00750.1-protein|Name=NO21G00750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=630bp
MSSGAGAGGGRVDKRSSSSSSMLARGKAFLRSFSGGDQPIVADAAGGSSG
GQPSRQQLYRQQPRLSVPPAPTMVNGAAAAGGRARKKGILATVDFPCTAA
ESASAGNTSSCHSSSASSATCQQQQQQQQQQQQHYNHEGDHHPNDQEEDD
DPFAGPIRVKITTPSRGGEGEGRLAAWLASPRLLLSRGEQQQQQQQQQQE
EEEEWEEGEWEGEIDVGEIDYGEEEDEEDEDEAPFDPRKAHETFIWRALQ
GSPVVGTGSNSECSSSSSTSATTSTQFRKSLKWADEDGGELNCVQYFDKN
AEPSQVLRMMLAADARAEGAPGSGRAAMGRDDIVKNLEPYLKQLKGNVRE
VQPVKLMRNGETRAILIAGRGPVRMRVGVGIVWMGGLIKHLRMIKNPSAE
FLEDEALRSSLPPSLPPPSVVAAGRPIPPPLPSRGGTAAPSPCHEQHHPS
SPSSSSPPFTTPRSTESELLLLSPPYLIPRPASFPPPTLTVQVISALNLK
SSAQLPRPVNPYVKLRLGGREGRTNVLTNTKNPVWAGTREGLLRGVGVGG
RGGGGGEGVGGGGNVFRFPAEDPNALLKVTVGDWKLGKNVWIARLAIPLA
SIEVCPPTSALQPSFKRPGRGGGQGGGRT*

mRNA from alignment at chr21:254324..256807-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO21G00750.1 ID=NO21G00750.1|Name=NO21G00750.1|organism=Nannochloropsis oceanica|type=mRNA|length=2484bp|location=Sequence derived from alignment at chr21:254324..256807- (Nannochloropsis oceanica)
ATTCGATTCGCCGTTGAGGAAAACCATTTTTCCTCCACACGCACGCGCCA
CACTACGACACACGCACCGTGGTCGTGCACCTTTTAAGAACTTGATAGCG
GAATGTCAAGAATTTGTAGTCCGGTGTATTATTTCGTCCTGGCCTCCAAA
ATTATTTGGGACGCGCCGCACAATGCAATGGGCCGGTGTCTACTACTACG
TTGCCAACGCTTGTTCTCCTGCCATCCCTTCTCACCAGCCCTTACAAGAT
CGCACCCTCGAGACACAGTCCACAGCCAATAAAGAACAATTAAAACGCAA
TGAGCAGCGGGGCCGGCGCAGGTGGCGGTCGGGTGGACAAGCGTTCGTCG
TCATCTTCGTCCATGCTGGCGCGGGGCAAGGCGTTCTTGCGTAGCTTCTC
AGGTGGGGACCAGCCTATCGTTGCAGATGCCGCTGGCGGCAGCAGTGGCG
GCCAACCATCCCGTCAGCAGCTCTACCGCCAGCAGCCGCGTCTATCCGTC
CCTCCCGCACCGACGATGGTGAATGGAGCAGCAGCTGCAGGAGGAAGAGC
AAGGAAGAAAGGCATACTAGCTACCGTTGACTTCCCATGCACAGCAGCCG
AATCAGCATCAGCAGGAAATACGTCTTCTTGCCATTCGTCTTCTGCATCT
TCAGCGACTTGCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
TTACAACCACGAGGGAGACCACCACCCCAACGACCAAGAGGAAGACGATG
ATCCGTTTGCCGGGCCAATCAGAGTTAAGATCACCACACCTTCCCGTGGC
GGCGAAGGGGAAGGAAGACTAGCTGCTTGGTTGGCCTCACCAAGGTTGCT
GCTGTCTAGAGGAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGG
AGGAGGAGGAATGGGAGGAAGGAGAGTGGGAGGGGGAGATAGATGTAGGA
GAAATAGATTATGGAGAGGAAGAAGATGAGGAAGATGAGGATGAGGCGCC
ATTTGACCCCCGCAAGGCTCACGAAACCTTTATCTGGCGAGCGCTGCAAG
GCTCGCCGGTGGTCGGAACTGGCAGCAACTCTGAATGTAGCAGCAGCAGC
AGCACCAGTGCAACCACGTCCACCCAATTTAGAAAGTCCCTGAAATGGGC
CGATGAGGACGGGGGCGAGCTGAATTGTGTGCAGTACTTCGACAAGAACG
CCGAGCCATCTCAGGTCCTCCGCATGATGCTTGCTGCCGATGCCCGTGCG
GAAGGCGCCCCTGGGAGTGGGCGAGCCGCCATGGGTCGGGATGACATTGT
CAAGAATCTTGAGCCGTACCTGAAGCAATTAAAAGGCAACGTCCGGGAGG
TCCAGCCGGTTAAACTCATGAGGAACGGTGAAACACGCGCGATACTGATA
GCCGGGAGGGGGCCCGTGAGGATGAGGGTGGGGGTAGGCATTGTGTGGAT
GGGCGGTCTAATCAAACACCTGAGAATGATTAAGAACCCCTCCGCCGAAT
TTTTAGAAGACGAGGCTCTCCGTTCCTCCCTCCCTCCCTCCCTGCCCCCT
CCATCTGTGGTGGCCGCCGGACGCCCTATTCCTCCTCCTCTCCCTTCCCG
CGGTGGGACAGCAGCACCATCACCTTGCCACGAGCAGCACCACCCTTCCT
CCCCTTCCTCCTCCTCGCCCCCCTTCACCACCCCCCGATCCACCGAATCC
GAGCTCCTCCTCCTCTCCCCCCCCTACCTCATTCCTCGCCCTGCGTCCTT
CCCTCCCCCCACCCTGACCGTTCAAGTCATATCAGCCCTCAATCTGAAGA
GCTCGGCCCAATTGCCACGACCGGTCAATCCTTACGTAAAATTAAGGCTG
GGAGGAAGGGAGGGAAGGACGAATGTGCTGACCAACACCAAGAACCCTGT
GTGGGCGGGTACGAGGGAGGGCCTGCTTAGAGGAGTAGGAGTAGGAGGAA
GAGGAGGAGGAGGAGGGGAGGGGGTAGGAGGAGGAGGGAATGTCTTCCGT
TTTCCGGCCGAGGACCCAAATGCCTTGTTGAAGGTGACAGTGGGGGATTG
GAAGCTAGGAAAAAACGTGTGGATTGCGCGCCTGGCCATTCCCCTGGCAT
CGATCGAAGTCTGCCCCCCCACCTCCGCCCTCCAGCCCTCCTTTAAGAGG
CCAGGACGCGGCGGAGGACAAGGGGGGGGGAGGACGTGATGGAGGGAGGG
GTGACGAAGGAATTTCAATTGCGTCTGCGTGTGTCGAGGTTCGGGACGAG
GATCGAAAAGGAGGGGGTCAGCGAGGCCAAGTTAACGCTGAAATTAAAAT
ATGAATTCTGGGAACGATCGTGGACCCTGGACGAGCTGAAAGCACGGGAC
GAAGAGAGGCTGAGGCAGGAGGAAGAGGAAGAGGAGGAGGAGGAGGAAAG
GGGGAGGAGCGGAGGAGTGGCCGTGGCTGGAGGATGGAGGAGAGAGGGAG
GAAAAGGAGGGAGGGGAAGAGGGAGGGAGGGGGC

Coding sequence (CDS) from alignment at chr21:254324..256807-

>NO21G00750.1 ID=NO21G00750.1|Name=NO21G00750.1|organism=Nannochloropsis oceanica|type=CDS|length=1890bp|location=Sequence derived from alignment at chr21:254324..256807- (Nannochloropsis oceanica)
ATGAGCAGCGGGGCCGGCGCAGGTGGCGGTCGGGTGGACAAGCGTTCGTC
GTCATCTTCGTCCATGCTGGCGCGGGGCAAGGCGTTCTTGCGTAGCTTCT
CAGGTGGGGACCAGCCTATCGTTGCAGATGCCGCTGGCGGCAGCAGTGGC
GGCCAACCATCCCGTCAGCAGCTCTACCGCCAGCAGCCGCGTCTATCCGT
CCCTCCCGCACCGACGATGGTGAATGGAGCAGCAGCTGCAGGAGGAAGAG
CAAGGAAGAAAGGCATACTAGCTACCGTTGACTTCCCATGCACAGCAGCC
GAATCAGCATCAGCAGGAAATACGTCTTCTTGCCATTCGTCTTCTGCATC
TTCAGCGACTTGCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
ATTACAACCACGAGGGAGACCACCACCCCAACGACCAAGAGGAAGACGAT
GATCCGTTTGCCGGGCCAATCAGAGTTAAGATCACCACACCTTCCCGTGG
CGGCGAAGGGGAAGGAAGACTAGCTGCTTGGTTGGCCTCACCAAGGTTGC
TGCTGTCTAGAGGAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAG
GAGGAGGAGGAATGGGAGGAAGGAGAGTGGGAGGGGGAGATAGATGTAGG
AGAAATAGATTATGGAGAGGAAGAAGATGAGGAAGATGAGGATGAGGCGC
CATTTGACCCCCGCAAGGCTCACGAAACCTTTATCTGGCGAGCGCTGCAA
GGCTCGCCGGTGGTCGGAACTGGCAGCAACTCTGAATGTAGCAGCAGCAG
CAGCACCAGTGCAACCACGTCCACCCAATTTAGAAAGTCCCTGAAATGGG
CCGATGAGGACGGGGGCGAGCTGAATTGTGTGCAGTACTTCGACAAGAAC
GCCGAGCCATCTCAGGTCCTCCGCATGATGCTTGCTGCCGATGCCCGTGC
GGAAGGCGCCCCTGGGAGTGGGCGAGCCGCCATGGGTCGGGATGACATTG
TCAAGAATCTTGAGCCGTACCTGAAGCAATTAAAAGGCAACGTCCGGGAG
GTCCAGCCGGTTAAACTCATGAGGAACGGTGAAACACGCGCGATACTGAT
AGCCGGGAGGGGGCCCGTGAGGATGAGGGTGGGGGTAGGCATTGTGTGGA
TGGGCGGTCTAATCAAACACCTGAGAATGATTAAGAACCCCTCCGCCGAA
TTTTTAGAAGACGAGGCTCTCCGTTCCTCCCTCCCTCCCTCCCTGCCCCC
TCCATCTGTGGTGGCCGCCGGACGCCCTATTCCTCCTCCTCTCCCTTCCC
GCGGTGGGACAGCAGCACCATCACCTTGCCACGAGCAGCACCACCCTTCC
TCCCCTTCCTCCTCCTCGCCCCCCTTCACCACCCCCCGATCCACCGAATC
CGAGCTCCTCCTCCTCTCCCCCCCCTACCTCATTCCTCGCCCTGCGTCCT
TCCCTCCCCCCACCCTGACCGTTCAAGTCATATCAGCCCTCAATCTGAAG
AGCTCGGCCCAATTGCCACGACCGGTCAATCCTTACGTAAAATTAAGGCT
GGGAGGAAGGGAGGGAAGGACGAATGTGCTGACCAACACCAAGAACCCTG
TGTGGGCGGGTACGAGGGAGGGCCTGCTTAGAGGAGTAGGAGTAGGAGGA
AGAGGAGGAGGAGGAGGGGAGGGGGTAGGAGGAGGAGGGAATGTCTTCCG
TTTTCCGGCCGAGGACCCAAATGCCTTGTTGAAGGTGACAGTGGGGGATT
GGAAGCTAGGAAAAAACGTGTGGATTGCGCGCCTGGCCATTCCCCTGGCA
TCGATCGAAGTCTGCCCCCCCACCTCCGCCCTCCAGCCCTCCTTTAAGAG
GCCAGGACGCGGCGGAGGACAAGGGGGGGGGAGGACGTGA

Synonyms

Publications