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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr21 | genome | chr21:190933..194080 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G00550.1 vs.
Match: EWM22548.1 (hypothetical protein Naga_100378g3 [Nannochloropsis gaditana]) HSP 1 Score: 226.1 bits (575), Expect = 4.000e-55 Identity = 126/213 (59.15%), Postives = 162/213 (76.06%), Query Frame = 0
Query: 597 LCKAELLSRIGRVFLQMGNLQEARRFFAHAEIIVSTTTSSSSSSSSSVNVNGSGVATTGDNIDPPSRPPSRPPSPLGWAEAQVGMGRGLMAVAEGRWEEARQSFEGVAAAERTRLAEAPFIFTSSDSSFLPSSSPSSPS--SSSPWPYLLLPSPDETLLPPALTNLAVLALYRGDVHKAIAILESFLKDDPPRNMTESLLLNLSYLYELVGDK 808
+ + E+L RIGRVFLQ+GN+QEARRF+ HAEI+V + S + S+ + G PP RPPSRPP LGWAE+QVGMG+GL+AVAEGRWE+A+++F+ VAAAERTRL E PF+F + S SS P++P S SPWP LLLPSP++ LL PA+ NLAVL+L+RG+VH AI ILE+F+++DPPRNMTE+L+LNLSY Y+LVGDK
Sbjct: 1 MAQVEVLQRIGRVFLQVGNVQEARRFWNHAEILV---LKAKSCALSAQQFSSQGHEEQAMPAFPPPRPPSRPPYFLGWAESQVGMGKGLLAVAEGRWEDAQRNFQKVAAAERTRLLEDPFVFDPALSPSPGSSGPTAPPFLSPSPWPSLLLPSPEDNLLLPAIINLAVLSLHRGNVHAAIHILENFIREDPPRNMTENLVLNLSYFYDLVGDK 210
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO21G00550.1 ID=NO21G00550.1|Name=NO21G00550.1|organism=Nannochloropsis oceanica|type=mRNA|length=2649bp ATGAGCTACAACGACGGGAGTAGGACGCCGCCGCCGCCCCCACCGCCACC GCCACAACAACGAGATGAAGAGCCTCCGACAAGCGGCATCGACGGCATGG ATGTCTCCTCCCTCTTTCCTCCAATATCATCCCCCCCGTCTATTTCCTCC TCGGCGCCGCCGCCACCGCCGCCGCCGCCGCAGCAGCAGTGGACCTCCCC CCTCTCCTTCGACCCCCTCTCCGCTGGCCTCGTTACACCCATGCCTCCCC CCCACTCATCCTACCGACCATCACCACCACCACCGCAACCTCCACACCAA CTATCGTCTTCTTCTCCTTTCGTCTTTGACGATCCGCTTTCGGCAGCATT GGCGCCTCCTCCTCCTCCTCCCCGCCCAAACCCTCCTCGGCCTCCACCTC CGCCACCGCCAAGGCCTCATCCTTCAGGAGTTCCCCCTCCCCCTCCTCCT CCTCCTCGCCCTCTACCACTACCTAGACCATCAATGCCTCCTTATATCAC TTCAGAAACCCAACGAGCGCTCGCACCTCCTCCTCCCCCTCCCCCTTCTC TTCGTCTTCCTCACGCCCAAGCCAATCACTCCCCATCTCCTCCTCCTCCT CCTCCTCCTCTACCATCCACACAAACTCCCTTTCGACACCAAAAACAAGA ACAAGAACAAGAACAACAACAACAACAACAACAACAACAACAACAACAAT TCCAACCCCAGTGGCCTTCTATTCCTCCGCCTCCTCTTCCTCCAGGATCT TCCTCATCCTCTCCTTCCCTCCACCAGCAGCTACGCCCCCTCCCCCCCCA AAAACCCCTCTCCCCTGACCATTGTCATCCCTCTCCTCCCGCCCCTCCTC CTCCCCCGCCTCCTCCTCTACCTCCTCCCTCCCTACCCCTCGCCACCAGA ATAAGTGAGTTGACGGACGTCTTCCTAAAGAGCAGCGGTGGGGTGTTACC CGACCCGGAAGGGTTCAAGTCCCGTCGAGGTTTGTTAGCTTTGTGCAAAA TGAGGGCCTGGAGAACGGTCTTGGAGGTGAGCGAGGATGTAATGATGAGG AAGGAAGGGGGTGGTGAGGGGGGGCGGGAGGGAGGGGAGGTGTTCGACGT AGTTATTTGCACGTTTTTGGCGCTGCGGAAACTGGAGAGGAGGAAGGAGA TGGAAAGGATAGTGAGACGGATGATGCGGGAGGAGGAGGAGGAGAAGGAG GGAGGGAGGAAGGAAGGAGTGGGGAGGATGCCCTTGCAGTTGCTTTTTTT GGTGGCTGATGCGTGGGTGTGGTTGGGTGAGGGGGAGGAGGCGGAGAGGG CATTTGCAACTTTGAGAAAGCGGGTAGAGCGATATCAGCGGGTCAAGAGA GAAAGGAATGGAGAGGAGTATGGGAAAGAGAGCAAGGAGGGAGAGGAGGA ACAGCAGCGGTGGCGGAGGGAGAAAGAGGGGAAAGGAGGGAACGAGGAAG GGGAGGAGGGAGGGAGGTTGGTGGAGGTGTTGTCACAGTCGATGCGGAGG CTGGCCCTGGCGGACGCCGTGGACTTAAACCCTGCAGAGGTGAGATGGTG GCTTGCCAAGGCCGACCTCAGCCTCCTGACCCTCCATCTCTCCCAAAAAT CCTGGCGGAACGCCCTCGTCATTCTAGAGCGCGTCCGCCGCTCCCTCGAA CAAGACCTCCTCGAAGCCCAGGAAGGGCAGGGAGGGAAGGAGGGAGAGCA GACCCCCTCCTCCTCCTCTTTCGCCTCTCCCATGACGCAGAGTGGAAGAG AGGGAGGACAGCCCTCGGCCTCCCTCCCCCTTCTCATTCTCTGCAAGGCC GAGCTGCTGTCTCGAATCGGCCGCGTTTTCCTGCAAATGGGAAACCTCCA AGAAGCCCGTCGTTTCTTTGCACACGCCGAAATTATCGTCTCCACCACCA CTAGCAGCAGCAGCAGCAGCAGCAGCAGCGTTAATGTTAATGGTAGTGGC GTCGCCACCACTGGGGATAACATCGATCCTCCCTCCCGCCCTCCCTCCCG CCCTCCCTCTCCCTTGGGCTGGGCGGAGGCGCAAGTAGGAATGGGAAGGG GTCTGATGGCCGTGGCGGAGGGAAGGTGGGAGGAGGCCAGACAGTCTTTC GAAGGAGTCGCAGCAGCAGAAAGGACGAGACTAGCTGAAGCCCCCTTCAT CTTCACTAGCAGCGACTCCTCCTTTCTCCCTTCTTCGTCCCCCTCTTCCC CCTCCTCCTCCTCCCCCTGGCCCTACCTCCTCCTCCCCTCCCCTGACGAG ACCCTCCTCCCTCCCGCCCTCACCAACTTGGCCGTCCTCGCTCTCTATCG AGGAGACGTGCACAAGGCCATCGCCATTCTAGAAAGTTTCCTCAAGGATG ATCCCCCCAGGAATATGACAGAAAGCCTCCTCCTCAATCTCTCCTACCTC TACGAGCTCGTGGGCGACAAGGCCTGTCGCGAGGAGAAGATGAAAGTGTT GGAGACAGTGGCGCGCCGGTTCCGGTTGGATGATATCGAAGCACGCTTTT TCAGTTAGTTAGGGAAAAATCAGGGGAGATATGGAGGAAGGAGGGAAGCA GGTATAGATTTTGAAAAATAACATGGAATTCTGCTATTGAAGGCGTAGGG CAGTAACCGGGACGCTTGGTTATTTTCTCATGCTTTTTTTTGTGTTTGG back to topprotein sequence of NO21G00550.1 >NO21G00550.1-protein ID=NO21G00550.1-protein|Name=NO21G00550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=836bp MSYNDGSRTPPPPPPPPPQQRDEEPPTSGIDGMDVSSLFPPISSPPSISS SAPPPPPPPPQQQWTSPLSFDPLSAGLVTPMPPPHSSYRPSPPPPQPPHQ LSSSSPFVFDDPLSAALAPPPPPPRPNPPRPPPPPPPRPHPSGVPPPPPP PPRPLPLPRPSMPPYITSETQRALAPPPPPPPSLRLPHAQANHSPSPPPP PPPLPSTQTPFRHQKQEQEQEQQQQQQQQQQQQFQPQWPSIPPPPLPPGS SSSSPSLHQQLRPLPPQKPLSPDHCHPSPPAPPPPPPPPLPPPSLPLATR ISELTDVFLKSSGGVLPDPEGFKSRRGLLALCKMRAWRTVLEVSEDVMMR KEGGGEGGREGGEVFDVVICTFLALRKLERRKEMERIVRRMMREEEEEKE GGRKEGVGRMPLQLLFLVADAWVWLGEGEEAERAFATLRKRVERYQRVKR ERNGEEYGKESKEGEEEQQRWRREKEGKGGNEEGEEGGRLVEVLSQSMRR LALADAVDLNPAEVRWWLAKADLSLLTLHLSQKSWRNALVILERVRRSLE QDLLEAQEGQGGKEGEQTPSSSSFASPMTQSGREGGQPSASLPLLILCKA ELLSRIGRVFLQMGNLQEARRFFAHAEIIVSTTTSSSSSSSSSVNVNGSG VATTGDNIDPPSRPPSRPPSPLGWAEAQVGMGRGLMAVAEGRWEEARQSF EGVAAAERTRLAEAPFIFTSSDSSFLPSSSPSSPSSSSPWPYLLLPSPDE TLLPPALTNLAVLALYRGDVHKAIAILESFLKDDPPRNMTESLLLNLSYL YELVGDKACREEKMKVLETVARRFRLDDIEARFFS* back to topmRNA from alignment at chr21:190933..194080+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO21G00550.1 ID=NO21G00550.1|Name=NO21G00550.1|organism=Nannochloropsis oceanica|type=mRNA|length=3148bp|location=Sequence derived from alignment at chr21:190933..194080+ (Nannochloropsis oceanica) ATGAGCTACAACGACGGGAGTAGGACGCCGCCGCCGCCCCCACCGCCACC
GCCACAACAACGAGATGAAGAGCCTCCGACAAGCGGCATCGACGGCATGG
ATGTCTCCTCCCTCTTTCCTCCAATATCATCCCCCCCGTCTATTTCCTCC
TCGGCGCCGCCGCCACCGCCGCCGCCGCCGCAGCAGCAGTGGACCTCCCC
CCTCTCCTTCGACCCCCTCTCCGCTGGCCTCGTTACACCCATGCCTCCCC
CCCACTCATCCTACCGACCATCACCACCACCACCGCAACCTCCACACCAA
CTATCGTCTTCTTCTCCTTTCGTCTTTGACGATCCGCTTTCGGCAGCATT
GGCGCCTCCTCCTCCTCCTCCCCGCCCAAACCCTCCTCGGCCTCCACCTC
CGCCACCGCCAAGGCCTCATCCTTCAGGAGTTCCCCCTCCCCCTCCTCCT
CCTCCTCGCCCTCTACCACTACCTAGACCATCAATGCCTCCTTATATCAC
TTCAGAAACCCAACGAGCGCTCGCACCTCCTCCTCCCCCTCCCCCTTCTC
TTCGTCTTCCTCACGCCCAAGCCAATCACTCCCCATCTCCTCCTCCTCCT
CCTCCTCCTCTACCATCCACACAAACTCCCTTTCGACACCAAAAACAAGA
ACAAGAACAAGAACAACAACAACAACAACAACAACAACAACAACAACAAT
TCCAACCCCAGTGGCCTTCTATTCCTCCGCCTCCTCTTCCTCCAGGATCT
TCCTCATCCTCTCCTTCCCTCCACCAGCAGCTACGCCCCCTCCCCCCCCA
AAAACCCCTCTCCCCTGACCATTGTCATCCCTCTCCTCCCGCCCCTCCTC
CTCCCCCGCCTCCTCCTCTACCTCCTCCCTCCCTACCCCTCGCCACCAGA
ATAAGTGAGTTGACGGACGTCTTCCTAAAGAGCAGCGGTGGGGTGTTACC
CGACCCGGAAGGGTTCAAGTCCCGTCGAGGTTTGTTAGCTTTGTGCAAAA
TGAGGGCCTGGAGAACGGTCTTGGAGGTGAGCGAGGATGTAATGATGAGG
AAGGAAGGGGGTGGTGAGGGGGGGCGGGAGGGAGGGGAGGTGTTCGACGT
AGTTATTTGCACGTTTTTGGCGCTGCGGAAACTGGAGAGGAGGAAGGAGA
TGGAAAGGATAGTGAGACGGATGATGCGGGAGGAGGAGGAGGAGAAGGAG
GGAGGGAGGAAGGAAGGAGTGGGGAGGATGCCCTTGCAGTTGCTTTTTTT
GGTGGCTGATGCGTGGGTGTGGTTGGGTGAGGGGGAGGAGGCGGAGAGGG
CATTTGCAACTTTGAGAAAGCGGGTAGAGCGATATCAGCGGGTCAAGAGA
GAAAGGAATGGAGAGGAGTATGGGAAAGAGAGCAAGGAGGGAGAGGAGGA
ACAGCAGCGGTGGCGGAGGGAGAAAGAGGGGAAAGGAGGGAACGAGGAAG
GGGAGGAGGGAGGGAGGTTGGTGGAGGTGTTGTCACAGTCGATGCGGAGG
CTGGCCCTGGCGGACGCCGTGGACTTAAACCCTGCAGAGGTGAGATGGTG
GCTTGCCAAGGTACGTGTGGGGAGGTGGTATTGTCCCTCCCTCCCTCCCT
TCCTCCCTCCGTCCTTCCCTCCCTCCCTCTTTTCCTCCTCCTCGAACACA
CACACCAATCCATTCACAGTACTACCACCGCTCCCTTCCTCCCTCCCTCC
CTCTATCCTTCCCTACCTCCCTCCCCAGGCCGACCTCAGCCTCCTGACCC
TCCATCTCTCCCAAAAATCCTGGCGGAACGCCCTCGTCATTCTAGAGCGC
GTCCGCCGCTCCCTCGAACAAGACCTCCTCGAAGCCCAGGAAGGGCAGGG
AGGGAAGGAGGGAGAGCAGACCCCCTCCTCCTCCTCTTTCGCCTCTCCCA
TGACGCAGAGTGGAAGAGAGGGAGGACAGCCCTCGGCCTCCCTCCCCCTT
CTCATTCTCTGCAAGGCCGAGCTGCTGTCTCGAATCGGCCGCGTTTTCCT
GCAAATGGGAAACCTCCAAGAAGCCCGTCGTTTCTTTGCACACGCCGAAA
TTATCGTCTCCACCACCACTAGCAGCAGCAGCAGCAGCAGCAGCAGCGTT
AATGTTAATGGTAGTGGCGTCGCCACCACTGGGGATAACATCGATCCTCC
CTCCCGCCCTCCCTCCCGCCCTCCCTCTCCCTTGGGCTGGGCGGAGGCGC
AAGTAGGAATGGGAAGGGGTCTGATGGCCGTGGCGGAGGGAAGGTGGGAG
GAGGCCAGACAGTCTTTCGAAGGAGTCGCAGCAGCAGAAAGGACGAGACT
AGCTGAGTAAGGAGGGAGGGGAGGAGGAAGGGAAAAGGATTGGGAAGGAA
GGAGGGGTGTCTACAATTCGGGAATAGTCATTCTATGCATCTTCCTGCAC
TTACTATCCCCACATCATTCCTATCCTCCCTCCTTCCTTCCTTCCCTTCC
TCCCTCCCTCGCCTAATCGACTCAGAGCCCCCTTCATCTTCACTAGCAGC
GACTCCTCCTTTCTCCCTTCTTCGTCCCCCTCTTCCCCCTCCTCCTCCTC
CCCCTGGCCCTACCTCCTCCTCCCCTCCCCTGACGAGACCCTCCTCCCTC
CCGCCCTCACCAACTTGGCCGTCCTCGCTCTCTATCGAGGAGACGTGCAC
AAGGCCATCGCCATTCTAGAAAGTTTCCTCAAGGATGATCCCCCCAGGAA
TATGACAGAAAGCCTCCTCCTCAATCTCTCCTACCTCTACGAGCTCGTGG
GCGACAAGTACGTACCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
CCTCTCCCTCCCTCTCTCTCCTGGCCTGCCGTTTTTTTTTGTCAGCTCCG
ATGACTCACTTTTGCGCCCTCCCTCCCCCCCTCCCTCGCTCTCTTCTTTC
CCCCTTTTCTTCCCACCAGGGCCTGTCGCGAGGAGAAGATGAAAGTGTTG
GAGACAGTGGCGCGCCGGTTCCGGTTGGATGATATCGAAGCACGCTTTTT
CAGTTAGTTAGGGAAAAATCAGGGGAGATATGGAGGAAGGAGGGAAGCAG
GTATAGATTTTGAAAAATAACATGGAATTCTGCTATTGAAGGCGTAGGGC
AGTAACCGGGACGCTTGGTTATTTTCTCATGCTTTTTTTTGTGTTTGG back to topCoding sequence (CDS) from alignment at chr21:190933..194080+ >NO21G00550.1 ID=NO21G00550.1|Name=NO21G00550.1|organism=Nannochloropsis oceanica|type=CDS|length=2508bp|location=Sequence derived from alignment at chr21:190933..194080+ (Nannochloropsis oceanica) ATGAGCTACAACGACGGGAGTAGGACGCCGCCGCCGCCCCCACCGCCACC GCCACAACAACGAGATGAAGAGCCTCCGACAAGCGGCATCGACGGCATGG ATGTCTCCTCCCTCTTTCCTCCAATATCATCCCCCCCGTCTATTTCCTCC TCGGCGCCGCCGCCACCGCCGCCGCCGCCGCAGCAGCAGTGGACCTCCCC CCTCTCCTTCGACCCCCTCTCCGCTGGCCTCGTTACACCCATGCCTCCCC CCCACTCATCCTACCGACCATCACCACCACCACCGCAACCTCCACACCAA CTATCGTCTTCTTCTCCTTTCGTCTTTGACGATCCGCTTTCGGCAGCATT GGCGCCTCCTCCTCCTCCTCCCCGCCCAAACCCTCCTCGGCCTCCACCTC CGCCACCGCCAAGGCCTCATCCTTCAGGAGTTCCCCCTCCCCCTCCTCCT CCTCCTCGCCCTCTACCACTACCTAGACCATCAATGCCTCCTTATATCAC TTCAGAAACCCAACGAGCGCTCGCACCTCCTCCTCCCCCTCCCCCTTCTC TTCGTCTTCCTCACGCCCAAGCCAATCACTCCCCATCTCCTCCTCCTCCT CCTCCTCCTCTACCATCCACACAAACTCCCTTTCGACACCAAAAACAAGA ACAAGAACAAGAACAACAACAACAACAACAACAACAACAACAACAACAAT TCCAACCCCAGTGGCCTTCTATTCCTCCGCCTCCTCTTCCTCCAGGATCT TCCTCATCCTCTCCTTCCCTCCACCAGCAGCTACGCCCCCTCCCCCCCCA AAAACCCCTCTCCCCTGACCATTGTCATCCCTCTCCTCCCGCCCCTCCTC CTCCCCCGCCTCCTCCTCTACCTCCTCCCTCCCTACCCCTCGCCACCAGA ATAAGTGAGTTGACGGACGTCTTCCTAAAGAGCAGCGGTGGGGTGTTACC CGACCCGGAAGGGTTCAAGTCCCGTCGAGGTTTGTTAGCTTTGTGCAAAA TGAGGGCCTGGAGAACGGTCTTGGAGGTGAGCGAGGATGTAATGATGAGG AAGGAAGGGGGTGGTGAGGGGGGGCGGGAGGGAGGGGAGGTGTTCGACGT AGTTATTTGCACGTTTTTGGCGCTGCGGAAACTGGAGAGGAGGAAGGAGA TGGAAAGGATAGTGAGACGGATGATGCGGGAGGAGGAGGAGGAGAAGGAG GGAGGGAGGAAGGAAGGAGTGGGGAGGATGCCCTTGCAGTTGCTTTTTTT GGTGGCTGATGCGTGGGTGTGGTTGGGTGAGGGGGAGGAGGCGGAGAGGG CATTTGCAACTTTGAGAAAGCGGGTAGAGCGATATCAGCGGGTCAAGAGA GAAAGGAATGGAGAGGAGTATGGGAAAGAGAGCAAGGAGGGAGAGGAGGA ACAGCAGCGGTGGCGGAGGGAGAAAGAGGGGAAAGGAGGGAACGAGGAAG GGGAGGAGGGAGGGAGGTTGGTGGAGGTGTTGTCACAGTCGATGCGGAGG CTGGCCCTGGCGGACGCCGTGGACTTAAACCCTGCAGAGGTGAGATGGTG GCTTGCCAAGGCCGACCTCAGCCTCCTGACCCTCCATCTCTCCCAAAAAT CCTGGCGGAACGCCCTCGTCATTCTAGAGCGCGTCCGCCGCTCCCTCGAA CAAGACCTCCTCGAAGCCCAGGAAGGGCAGGGAGGGAAGGAGGGAGAGCA GACCCCCTCCTCCTCCTCTTTCGCCTCTCCCATGACGCAGAGTGGAAGAG AGGGAGGACAGCCCTCGGCCTCCCTCCCCCTTCTCATTCTCTGCAAGGCC GAGCTGCTGTCTCGAATCGGCCGCGTTTTCCTGCAAATGGGAAACCTCCA AGAAGCCCGTCGTTTCTTTGCACACGCCGAAATTATCGTCTCCACCACCA CTAGCAGCAGCAGCAGCAGCAGCAGCAGCGTTAATGTTAATGGTAGTGGC GTCGCCACCACTGGGGATAACATCGATCCTCCCTCCCGCCCTCCCTCCCG CCCTCCCTCTCCCTTGGGCTGGGCGGAGGCGCAAGTAGGAATGGGAAGGG GTCTGATGGCCGTGGCGGAGGGAAGGTGGGAGGAGGCCAGACAGTCTTTC GAAGGAGTCGCAGCAGCAGAAAGGACGAGACTAGCTGAAGCCCCCTTCAT CTTCACTAGCAGCGACTCCTCCTTTCTCCCTTCTTCGTCCCCCTCTTCCC CCTCCTCCTCCTCCCCCTGGCCCTACCTCCTCCTCCCCTCCCCTGACGAG ACCCTCCTCCCTCCCGCCCTCACCAACTTGGCCGTCCTCGCTCTCTATCG AGGAGACGTGCACAAGGCCATCGCCATTCTAGAAAGTTTCCTCAAGGATG ATCCCCCCAGGAATATGACAGAAAGCCTCCTCCTCAATCTCTCCTACCTC TACGAGCTCGTGGGCGACAAGGCCTGTCGCGAGGAGAAGATGAAAGTGTT GGAGACAGTGGCGCGCCGGTTCCGGTTGGATGATATCGAAGCACGCTTTT TCAGTTAG back to top
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