NO20G02510.1, NO20G02510.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO20G02510.1
Unique Name	NO20G02510.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3585
Alignment location	chr20:784336..791872 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr20	genome	chr20:784336..791872 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO20G02510.1 vs.
Match: ORX93774.1 (potassium/sodium efflux P-type ATPase [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 648.3 bits (1671), Expect = 3.500e-182
Identity = 388/867 (44.75%), Postives = 535/867 (61.71%), Query Frame = 0

Query:   28 QTCMERPYNATS-DEVLSYYQTSSERGLSPQEVEERRLVFGRNALKGRHSVHPLVLLLRHLFNVMSLILFIAVALALAVEEWIEAGVIGFIIVLNTVVGFLQEYSSEQTMQALRRLSSPLARAVRECDVVELPADELVPGDIINLKEGDQVPADVRILTAVAFNVEEAILTGESVAVSKVVGPMNSADHAGQVERTDEPLGVGDRKNMAFFGCVVGQGRAIAVVTATGMETELGKIAHSMGERGNT-KTNLQRQLEYLSIGLFLFAVLLGFVVIAVNKFSLEHETLLYAIALAVALIPEGLVPVVTLCMSIGVRKMAEARTIVRLLPALEALGSVTDICSDKTGTLTLSRMVVTNIVLPSTSPSLPPSPLHVSGHGLEPEGRFYKGEGEDGRDRG---------NEKEEVDPKTEPGLMPLLTVASLCNSSSLAFDKNQNEWIAVGAATEVALTVLARKAGLFKEKPSCPASSTPPSFETEFPFDSVLKRMSVVYRHPSSPSSTLHVLTKGAFESVWSVCDYVRTADGGKKRWAKQQQQPVEHAFFLAWQGEVERLASKGLRVLAFAERVVEEGEEKGKEEGGKGEKEGREKAREEWENGMVFLGLVGLMDPPRPETRAAVDSCREAGIVVRMVTGDHPKTAAAIARQVAILSPDQKLPED---LIMAAKDFDACDDSQLDASKYLPRVVARCSPATKVKLIDALHRRGRVVAMTGDGVNDAPSLKAADVGIAMGKNGSDVTKQAADLILTDDNFATIVEAIREGRRIGANIVKFVCHLMSGNVAEVIILLIGLAFRDSDDLSVYPLSTLQILWINMVTSTPPALGLACEKAEPDVMRKPPAEKGKLLVNRVLGFDTLWYGCVMGLL 881
            +T    PY+     +V++  +T +E GL+ QE++ R   +G N + G   V P  +LLR L N +++IL IA+ +A + ++W+E GVI F+I+LNT +GF QEY +E+TM +LR+++SP +  +R+ + + +   E+VPGDI+  + GD + AD R+  +    V+EA+LTGESV V K +           V+  +EP  +GDR+NM +    V +GR   +VTATGM++E+GKIA  + E   + KT LQR L+ +++ LF  A++L  +V AVNKF +  +  +YAI++ +A+IPEGL+ VVTL M+ GVR MA  + IVR L ALEALGSVT+ICSDKTGTLT S+MV+T   LP           +VSG G  PEG  ++     G + G           ++         L  ++ V+SLCN + +  DKN ++W+ +G  TE AL V A K G    KPS     +      EFPFDS +KRMSVVY    S         KGA E V   C  +R  D   K  A ++++ +          +V++LAS GLRVL+ A R +E             E       RE+ +  MVFLGLVG+ DPPR E++ AV  C +AGI V M+TGDHP TA AIAR+VAIL  D    ++   L+M A +FD+  DS++DA   LP V+ARCSP TKVK+I+ALHRR +V AMTGDGVND+PSLK A++GIAMG  GSDV K A+D++LTDDNF+TIV A+ EGRRI ANI KFV HLMS NV+E+I L+IGLAF D+D  SVYP+S +QIL++NMVTS+PPA+ L  E A P  MR PP    + L N     D + YG +MGL+
Sbjct:    7 ETAPTLPYHTYDVRKVVTELKTDTEDGLTSQEIKSRTEKYGANQMSGEGGVSPWKVLLRQLLNYLTVILIIAMCVAFSAKDWVEGGVIAFVIILNTTIGFFQEYRAEKTMDSLRKMASPTSHVIRDGNQIHISTTEVVPGDILLFENGDVIGADCRLFESFNLEVDEALLTGESVPVPKTLD---------LVQDPEEP--IGDRRNMVYASTTVTKGRGKGIVTATGMDSEIGKIAKRLIESETSGKTALQRSLDKMALVLFGLAIILAIIVFAVNKFKISEDIAIYAISVGIAVIPEGLIAVVTLTMAAGVRNMAHNKAIVRQLSALEALGSVTNICSDKTGTLTQSKMVLTKAYLPG------DGYYNVSGTGFTPEGEIHQLGELSGEELGAISMSGPGPEARQITQDNMSTTLKRMIQVSSLCNMAIVKKDKNTDQWVGIGDPTETALQVFATKLG--NGKPSLTKEKSLFDIHAEFPFDSTVKRMSVVYTEGDSGKHI--AFLKGATERVVECCSRMRVGD---KEVAVEKKEELMQMI----GSKVDQLASNGLRVLSLAYRYIEP---------QLSETHPDYWEREQVDKNMVFLGLVGIYDPPRAESKDAVRECYKAGIRVHMLTGDHPATATAIAREVAILPADYSADKEGPRLVMTATEFDSLSDSEVDALPQLPHVIARCSPDTKVKMIEALHRRNKVAAMTGDGVNDSPSLKIANIGIAMGMGGSDVAKNASDIVLTDDNFSTIVRAVEEGRRIFANIQKFVLHLMSTNVSEIIALIIGLAFIDNDGTSVYPMSPVQILFLNMVTSSPPAMSLGLELANPLTMRVPPRPTRRGLFNYEAIADIVLYGAMMGLI 836

The following BLAST results are available for this feature:

BLAST of NO20G02510.1 vs.

BLAST of NO20G02510.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
ORX93774.1	3.500e-182	44.75	potassium/sodium efflux P-type ATPase [Basidiobolu...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO20G02510	NO20G02510	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO20G02510.1	NO20G02510.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO20G02510.1.cds1	NO20G02510.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G02510.1.cds2	NO20G02510.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G02510.1.cds3	NO20G02510.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G02510.1.cds4	NO20G02510.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G02510.1.cds5	NO20G02510.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G02510.1.cds6	NO20G02510.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G02510.1.cds7	NO20G02510.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G02510.1.cds8	NO20G02510.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G02510.1.cds9	NO20G02510.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G02510.1.cds10	NO20G02510.1.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G02510.1.cds11	NO20G02510.1.cds11	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G02510.1.cds12	NO20G02510.1.cds12	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G02510.1.cds13	NO20G02510.1.cds13	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G02510.1.cds14	NO20G02510.1.cds14	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G02510.1.cds15	NO20G02510.1.cds15	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G02510.1.cds16	NO20G02510.1.cds16	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G02510.1.cds17	NO20G02510.1.cds17	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G02510.1.cds18	NO20G02510.1.cds18	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G02510.1.cds19	NO20G02510.1.cds19	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G02510.1.cds20	NO20G02510.1.cds20	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr20:784336..791872-
coding sequence from alignment at chr20:784336..791872-

mRNA sequence

>NO20G02510.1 ID=NO20G02510.1|Name=NO20G02510.1|organism=Nannochloropsis oceanica|type=mRNA|length=3585bp
ATGGATAAGAATGGAGTTCATGCAGCCAAGGGAGAAGTGCAATTGGAAGG
GGGCATCAGCAACCATGGGACTGCCCTGTTCCAAACGTGCATGGAAAGGC
CCTACAACGCCACCTCTGACGAGGTTTTGAGTTACTACCAGACCTCCTCT
GAGCGAGGCCTCTCTCCTCAGGAGGTGGAAGAGCGGCGACTCGTTTTTGG
CCGCAACGCTCTGAAAGGCCGTCATTCCGTGCATCCTCTTGTCCTTCTCC
TGCGGCATTTGTTCAACGTCATGTCCCTGATTCTCTTTATTGCCGTGGCG
CTGGCCTTGGCGGTGGAGGAGTGGATCGAAGCGGGGGTGATAGGGTTCAT
CATCGTCCTCAACACAGTCGTGGGCTTTCTGCAGGAGTACAGCTCGGAGC
AGACCATGCAAGCGCTGCGTCGACTCAGCTCGCCCTTGGCCCGTGCCGTC
CGCGAATGCGATGTGGTGGAGCTGCCCGCGGACGAGCTCGTGCCCGGGGA
CATCATCAACCTGAAGGAGGGAGACCAGGTGCCGGCGGACGTTAGAATTT
TAACCGCCGTGGCCTTTAACGTCGAAGAAGCCATTTTGACAGGCGAGAGT
GTGGCAGTGAGCAAGGTGGTTGGGCCTATGAATTCCGCGGACCATGCGGG
ACAGGTCGAAAGGACGGATGAGCCCCTCGGCGTGGGCGACCGGAAGAACA
TGGCATTCTTCGGCTGTGTCGTCGGCCAAGGCCGCGCCATCGCCGTCGTC
ACTGCCACGGGCATGGAGACAGAGCTCGGGAAAATCGCTCATAGTATGGG
CGAACGCGGCAACACCAAGACAAATCTACAGCGCCAGCTGGAGTACCTGA
GCATCGGGCTCTTCCTCTTCGCCGTCCTGCTCGGTTTTGTCGTCATTGCG
GTCAATAAATTCAGCCTGGAGCACGAGACATTGCTGTATGCGATTGCCCT
GGCCGTGGCTCTCATCCCTGAGGGCCTCGTGCCCGTCGTCACTCTCTGCA
TGTCCATCGGCGTGCGCAAGATGGCCGAGGCCCGGACGATCGTCCGCCTT
CTCCCGGCTCTCGAGGCCCTGGGCAGTGTGACTGATATCTGCTCCGACAA
GACCGGCACCCTCACCCTTTCTCGAATGGTGGTGACCAATATCGTCCTTC
CCTCCACCTCCCCCTCCCTCCCTCCCTCCCCCCTGCACGTCTCTGGCCAC
GGGCTCGAGCCGGAGGGCAGGTTTTACAAAGGAGAAGGGGAGGACGGTAG
GGACAGGGGAAACGAGAAGGAGGAAGTGGATCCTAAGACTGAGCCAGGTC
TGATGCCCCTCCTGACGGTGGCGTCGCTCTGCAACTCCTCCTCTCTCGCC
TTCGACAAGAATCAGAACGAGTGGATCGCCGTCGGTGCTGCCACGGAGGT
GGCCCTCACGGTGTTGGCGCGCAAGGCCGGTCTTTTCAAGGAAAAGCCTT
CCTGCCCCGCGTCCTCTACTCCTCCCTCCTTCGAGACCGAGTTTCCCTTT
GACAGTGTACTGAAACGCATGTCTGTCGTCTACCGCCACCCGTCGTCCCC
CTCCTCCACCTTGCACGTCCTGACCAAGGGAGCCTTTGAGAGTGTGTGGA
GCGTGTGTGACTATGTCCGCACGGCGGATGGCGGGAAGAAGAGATGGGCG
AAGCAGCAGCAGCAGCCGGTGGAGCATGCCTTCTTCCTCGCTTGGCAGGG
GGAGGTGGAGCGCCTGGCGAGCAAGGGCCTACGCGTCCTGGCTTTCGCCG
AGCGAGTGGTGGAGGAAGGGGAGGAGAAAGGAAAGGAGGAGGGGGGAAAG
GGGGAGAAGGAGGGCAGAGAGAAAGCGAGGGAGGAGTGGGAAAATGGGAT
GGTGTTTCTCGGGCTCGTGGGCCTGATGGACCCGCCTCGACCGGAGACGC
GAGCCGCTGTGGACTCATGCCGCGAGGCCGGGATCGTCGTGCGCATGGTC
ACTGGCGACCACCCCAAGACCGCCGCAGCCATCGCCCGACAAGTCGCCAT
CCTCTCCCCGGACCAGAAGCTGCCCGAGGACTTGATTATGGCTGCCAAGG
ACTTCGACGCATGCGACGACTCTCAGCTCGATGCCTCCAAGTACCTGCCT
CGGGTGGTGGCCCGCTGCTCCCCTGCGACCAAAGTGAAGCTCATCGACGC
GCTGCACAGGAGGGGGAGGGTGGTGGCAATGACAGGTGATGGTGTGAACG
ACGCTCCCTCCCTCAAGGCCGCGGACGTGGGCATCGCCATGGGCAAGAAC
GGCAGCGACGTGACCAAGCAAGCCGCCGATCTCATCCTCACCGACGACAA
CTTTGCCACGATCGTCGAGGCCATCCGGGAAGGTCGCCGCATCGGCGCCA
ATATCGTCAAGTTTGTCTGCCATCTTATGTCAGGAAATGTCGCCGAAGTC
ATCATCCTGCTCATCGGCCTGGCCTTTCGCGATTCCGATGATCTCTCCGT
CTATCCTCTCTCGACGCTGCAGATTCTCTGGATTAACATGGTTACCTCCA
CGCCGCCGGCCCTGGGTCTGGCCTGCGAGAAAGCGGAGCCTGACGTGATG
CGGAAGCCACCCGCGGAGAAAGGCAAACTGCTCGTGAACCGTGTCCTCGG
TTTTGATACCCTTTGGTATGGCTGTGTCATGGGCTTGCTCGGGTAAGTGT
CGTCTGATCTCCTTTCAACTTCCAACAGAAGAGTTCTGAAAGCTAGGATG
CGAATAGTCATCGAAATAAAACGCTTGTCGGGATCGCTCTTTTAATATTT
CCTCCTATCTCATCTCCTCCTTCTTATCCCCCCTTTCACCCCCGTCAGTC
TCGTAAATTTTAGCTTGGTAGTCTACGCCAACGACGACGTCGGACTCCAT
CGCACAAGCGCCTGTAACCACAACTTAGCTGGCTGCGAGAATGTTTACCG
TGCCCGCGCCACGACGTTCGCAACCACCACGATTCTCCTTCTCATCCATG
CGTACAATTGCAAGGGCCTTGGCACATCATTGGGGAAGATGAACTTCTTT
GAAAACCGCCTTCTCTTCGGCTCGGTTCTTTTAGGAATCGTCACGCTGCT
TCCCATCATCTATATCCCTTCGGTCGCGGAGAATGTGTTCTACCAAGCGC
CCATTAGCTGGGAGTGGGGTCTTGTCCTAGGAGCTTGTGTCATATTTATC
TTCTGCTCAGAGGTTTACAAAGCGTGCATTCGTCCTTACATCGTCAGGTT
GTATCTGGAGGCCGCTGAGCGCCGGCGACAAGCGAATGATAGTCTATTTG
ATGTGGCAGGAATGGAGCTTGTGGTGTTGTCCTAAATTGATGGAGGAGAA
TTATATGGGGGGAAAGAGAGAAAACTCAGCACAAACAACCATGACGACGT
TTGTAAGATGTTTATCTTGAATAAAGAAATCCAAAATACAAATGAGAGTG
ATATTTAAAAAACATCCAAAATTCGAATGAACGTTTTAATAGAGACGATC
TGGCAGATATGTTACGGGCGATTACGCTTAAAATAAAACAATGAGAAAAA
AAGATCTAGTCATACTCAGAATTTTCAATCAATACAAAAACTAAATTCTA
TAAAAAGAAATAATTGACCAGGTATGGACGGCGGA

protein sequence of NO20G02510.1

>NO20G02510.1-protein ID=NO20G02510.1-protein|Name=NO20G02510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=882bp
MDKNGVHAAKGEVQLEGGISNHGTALFQTCMERPYNATSDEVLSYYQTSS
ERGLSPQEVEERRLVFGRNALKGRHSVHPLVLLLRHLFNVMSLILFIAVA
LALAVEEWIEAGVIGFIIVLNTVVGFLQEYSSEQTMQALRRLSSPLARAV
RECDVVELPADELVPGDIINLKEGDQVPADVRILTAVAFNVEEAILTGES
VAVSKVVGPMNSADHAGQVERTDEPLGVGDRKNMAFFGCVVGQGRAIAVV
TATGMETELGKIAHSMGERGNTKTNLQRQLEYLSIGLFLFAVLLGFVVIA
VNKFSLEHETLLYAIALAVALIPEGLVPVVTLCMSIGVRKMAEARTIVRL
LPALEALGSVTDICSDKTGTLTLSRMVVTNIVLPSTSPSLPPSPLHVSGH
GLEPEGRFYKGEGEDGRDRGNEKEEVDPKTEPGLMPLLTVASLCNSSSLA
FDKNQNEWIAVGAATEVALTVLARKAGLFKEKPSCPASSTPPSFETEFPF
DSVLKRMSVVYRHPSSPSSTLHVLTKGAFESVWSVCDYVRTADGGKKRWA
KQQQQPVEHAFFLAWQGEVERLASKGLRVLAFAERVVEEGEEKGKEEGGK
GEKEGREKAREEWENGMVFLGLVGLMDPPRPETRAAVDSCREAGIVVRMV
TGDHPKTAAAIARQVAILSPDQKLPEDLIMAAKDFDACDDSQLDASKYLP
RVVARCSPATKVKLIDALHRRGRVVAMTGDGVNDAPSLKAADVGIAMGKN
GSDVTKQAADLILTDDNFATIVEAIREGRRIGANIVKFVCHLMSGNVAEV
IILLIGLAFRDSDDLSVYPLSTLQILWINMVTSTPPALGLACEKAEPDVM
RKPPAEKGKLLVNRVLGFDTLWYGCVMGLLG*

mRNA from alignment at chr20:784336..791872-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO20G02510.1 ID=NO20G02510.1|Name=NO20G02510.1|organism=Nannochloropsis oceanica|type=mRNA|length=7537bp|location=Sequence derived from alignment at chr20:784336..791872- (Nannochloropsis oceanica)
ATGGATAAGAATGGAGTTCATGCAGCCAAGGGAGAAGTGCAATTGGAAGG
GGGCATCAGCAACCATGGGACTGCCCTGTTCCAAACGTGCATGGAAAGGC
CCTACAACGCCACCTCTGACGAGGTTTTGAGTTACTACCAGGTAGGGAGA
GGAAGGGAGGTGAGGAAAGTAAGGACGATGAGGTCGAAAAAAGAGGAGGA
AGAGAAATATGTCCCGGATGTGGTGCAAACGCACTCATGTTGCTTCATAT
GTTACTTGCAGCGTGCGCTCGACAATCTTTTTTGTTCTCGCCCGTCCTGA
CTTATTTTTCTCATCTTCCTCTCAAAGACCTCCTCTGAGCGAGGCCTCTC
TCCTCAGGAGGTGGAAGAGCGGCGACTCGTTTTTGGCCGCAACGCTCTGA
AAGGCCGTCATTCCGTGCATCCTCTTGTCCTTCTCCTGCGGCATTTGTTC
AACGTCATGTCCCTGATTCTCTTTATTGCCGTGGCGCTGGCCTTGGCGGT
GGAGGAGTGGATCGAAGCGGGGGTGATAGGGTTCATCATCGTCCTCAACA
CAGTCGTGGGCTTTCTGCAGGTGCGGAAAAAGGGAAAGGGAAAAAGAGGT
ATAGGGGACAAGAGCGAGATGGGGAGAGCGTCTTTGGGTGCGGGGGAAAG
GGAGGGAAGAAGAGGGAGATTGAGAGAGAGAGGGAGAGGGAGAGGTACGA
AATAGTACACACAGGAGGTGGGAGATACGCCGAGCGACGGCATTGATAAG
GCAAACTGACTCCACCTCTGAAATTCCGTGCTCATTTTGTCTTTCTTCCC
CATCCCTCCATCATTCGGTCTTTTTATCCTTTCTTTTCTACAGGAGTACA
GCTCGGAGCAGACCATGCAAGCGCTGCGTCGACTCAGCTCGCCCTTGGCC
CGTGCCGTCCGCGAATGCGATGTGGTGGAGGTAGGGAGGGAGGGAAAGAA
GGAAGGGGGGGAGGAGGGAAGGAGGACGAAGGCGATGGATATGGACGCGG
CAGCTGTATGAGGCAACGCACCGTCGAATGGGGGATGGACGTGAGAGGGA
GGGAGCAAGGGGAGGGAGAGAGGGAGGGAGAGAGGGAGAGAGTGAAGGAG
GGGTGATCGGGATCATCATTTAACGCTGTCATTCACGGTCGCCCCCTCCC
TCCCTCCCTCCCTCTAGCTGCCCGCGGACGAGCTCGTGCCCGGGGACATC
ATCAACCTGAAGGAGGGAGACCAGGTGCCGGCGGACGTTAGAATTTTAAC
CGCCGTGGCCTTTAACGTCGAAGAAGCCATTTTGACAGGTACGAAGAATA
CCCTTTGACCCTCCCTCCCGCTTCTTCACTCCTTCACTCCTTCCCTCCTT
CCCTCTCTCTTCCTTTCTTCCCCACCTGCCACAGGCGAGAGTGTGGCAGT
GAGCAAGGTGGTTGGGCCTATGAATTCCGCGTAAGGAGACGGAGGGGGGA
AAGGGAGGGAGGGAGGGAAGGAGGGAGGGGAGAAATTGGCAACAAGCGCA
GCGAAACTCATGATGCCCACCTCCCCACCATCCCAGGGACCATGCGGGAC
AGGTCGAAAGGACGGATGGTGAGTGCTTGAATGCAGTCTACTCACTCCTC
CCTGCCCTCCCTCCCTCCCTCCCTCGCTTCCTCCCGACCCTCCCTCCCTC
CCTGCCCTCCCTGGCCCTCCCTCCCTCCCTGCCCTCCCTGCCCTCCCTCC
TTCCCTTCCTCTCTCCCTCCCTCTCCTTGGGTCAGGGTTATTGGCGTTCG
AGCAAGCAACCAAGCCACTTTCCCTCCCTCCCTCCCTTCCTCCCTCCCTC
CCTCCCTCCCTCCCCCTACAGAGCCCCTCGGCGTGGGCGACCGGAAGAAC
ATGGCATTCTTCGGCTGTGTCGTCGGCCAAGGCCGCGCCATCGCCGTCGT
CACTGCCACGGGCATGGAGACAGAGCTCGGGAAAATCGCTCATAGTATGG
GGTACGTGCCCTCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCGCCCTCCCAGGCAGACAAGACGAGCCTGACGCAACCTCGAC
CTCCCCCCCCCCTCCTCCCCCCCCCTCCCCATCCCATCTCCCAGCGAACG
CGGCAACACCAAGACAAATCTACAGCGCCAGCTGGAGTACCTGAGCATCG
GGCTCTTCCTCTTCGCCGTCCTGCTCGGTTTTGTCGTCATTGCGGTCAAT
AAATTCAGGTATATATATATGTCCTACATCCTTCCTCCTCTCTCCCGTGT
CACTCCCTTCCTCCTTCGTCTCGCCTCCCTCTCCCTTCATCTCATCCCTT
GCTAATCCCTCCCCCGGCCCCTCATTCTCATGCCGTCAAATTCACACATG
AAATTCTTCCCACCCACCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCCCC
CAGCCTGGAGCACGAGACATTGCTGTATGCGATTGCCCTGGCCGTGGCTC
TCATCCCTGAGGGCCTCGTGCCCGTCGTCACTCTCTGCATGTCCATCGGT
GAGGAGGGAGGGAGGGAGGAAGGGGGGAAGAAACGAAGAGTTGCAGTACG
TGCCTGATCTTCATTGATGAAAGGAGGAAGGGAGGGAGGGAGAGAGAGAG
AGAGGGCAGGAAAGCGGGAGGGAGAGAGGGAAAGATGGCCAACAGCGGGG
ACGAACAGCTGTACTGAGGCCAAAATTAACATATCCTCCCTCCCCTCCCT
CCCTCCCTCCCTCCAGGCGTGCGCAAGATGGCCGAGGCCCGGACGATCGT
CCGCCTTCTCCCGGCTCTCGAGGCCCTGGGCAGTGTGACTGATATCTGCT
CCGACAAGACCGGTGAGGGTGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGAGCTTGCGGGAGCATTACAATGCAGTTCTATT
GAATGAAGACGCGTCCTTGTTGACATGCTATCCAGGCCGCTGCACGGCGC
TGGCCCACTTCCTCTCTCTCTTTCTCTCTTTCTCTCTCTCTCTCTCTTTC
TCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCCTTTGAAGGTCTC
TCACCCATGCGGTTGCCTCCTCCGTATGCCCTAGGTAACTTACCAGTGTC
CTTCTCTTTTCGCGCCATTATCTCCCTCCACAGGCACCCTCACCCTTTCT
CGAATGGTGGTGACCAATATCGTCCTTCCCTCCACCTCCCCCTCCCTCCC
TCCCTCCCCCCTGCACGTCTCTGGCCACGGGCTCGAGCCGGAGGGCAGGT
TTTACAAAGGAGAAGGGGAGGACGGTAGGGACAGGGGAAACGAGAAGGAG
GAAGTGGATCCTAAGACTGAGCCAGGTGCGTAGAGATGGAGAAAGGGAGA
GAGGGAGGGAGAGAGGCAAAGTAAGGGAGAGGGGCACGCTCTTGATGGGG
ACGACAAGACGCCAAGAATAAGTTTCTATTTTTTTTATTTTTTTCATTAT
TATTATTATTATTATTATTTTTATTATTATTTTTTTTAATGTTTTTTCAC
GTAGTCCTCCTCCCTCTCCCCTCCCTTCCTCGCTCCCTCCCTCCCTCCCT
TCCACTCCCTCAGGTCTGATGCCCCTCCTGACGGTGGCGTCGCTCTGCAA
CTCCTCCTCTCTCGCCTTCGACAAGAATCAGAACGAGTGGATCGCCGTCG
GTGCTGCCACGGTGAGAACCCATCCTCCCTCCCTCCTTCCTTCCTTTCCT
CCTTCCTTCCCTCCTTCCCCCTCCTCCTTCCTTACACCCTCCCTTTGACG
TTGCAGTCGACTCGTCGTGACTGTCTCTTCTCTTTCAGCCCGCTGCTTTC
CTTATCCCTTCAACCACGCCTGCTGACCCCTCTCCTCCCTCCCTCCCTCT
CTCCCTCCCTCCCTTCCTCCTGCAGGAGGTGGCCCTCACGGTGTTGGCGC
GCAAGGCCGGTCTTTTCAAGGAAAAGCCTTCCTGCCCCGCGTCCTCTACT
CCTCCCTCCTTCGAGACCGAGTTTCCCTTTGACAGTGTACTGAAACGCAT
GTCTGTCGTCTACCGCCACCCGTCGTCCCCCTCCTCCACCTTGCACGTCC
TGACCAAGGGAGCCTTTGAGAGTGTGTGGAGCGTGTGTGACTATGTCCGC
ACGGCGGATGGCGGGAAGAAGAGATGGGCGAAGCAGCAGCAGCAGCCGGT
GGAGCATGCCTTCTTCCTCGCTTGGCAGGGGGAGGTGGAGCGCCTGGCGA
GCAAGGGCCTACGCGTCCTGGCTTTCGCCGAGCGAGTGGTGGAGGAAGGG
GAGGAGAAAGGAAAGGAGGAGGGGGGAAAGGGGGAGAAGGAGGGCAGAGA
GAAAGCGAGGGAGGAGTGGGAAAATGGGATGGTGTTTCTCGGGCTCGTGG
GCCTGATGGACCCGCCTCGACCGGAGGTGAGATTGGAAGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGATAGGTAAGAGGGCAGATCACCCA
CAGCTCTCCAATATATCTATACCACCATCCCACACACATATTATTATAAA
CGCACATTAACAATCTCCATGGGTAACACCCATCCAGACGCGAGCCGCTG
TGGACTCATGCCGCGAGGCCGGGATCGTCGTGCGGTACGTGAGATGGGAG
GGTGGAATTGAGGGAGGGGGGATAGGACAAATAAGGAGGAGGGAGGAAAA
AGGCATGGAGCTCACCTCTTCTCCCCCCCTCTTCCCCTTTCTCCCCCCCT
CCTTCCCTTTCTCCCTCAGCATGGTCACTGGCGACCACCCCAAGACCGCC
GCAGCCATCGCCCGACAAGTCGCCATCCTCTCCCCGGACCAGAAGCTGCC
CGAGGACTTGATTATGGCTGCCAAGGACTTCGACGCATGCGACGACTCTC
AGGTAAGCACACACCCTTCTTTCCCCCCCTCCTTCCCTCCCTTCCTCCCT
CCTGTCGTTGCTAGCTCATGGCCGGCATCCCTCTTTTGACCCTAACCGCC
GCGGTGCAGAGACACCCCGTGTCTTCATTCACTCCGAGTTTCCTAATCCC
ATTTTTATCCCTCCCTCCTTTCTCTTTCTTTAGCTCGATGCCTCCAAGTA
CCTGCCTCGGGTGGTGGCCCGCTGCTCCCCTGCGACCAAAGTGAAGCTCA
TCGACGCGCTGCACAGGAGGGGGAGGGTGGTGGCAATGACAGGTATGGCG
AGAGAGAGAGAAGGAGAGAAGGAGAGAGGGAGGGGGAGCGAGGGGGGAAA
AGAAGGAGGAGGGGATACACCACGAGCGATTGCCTTGGAGAGGGAGAGAG
GGGGATGACTTGATAAGCCGCTGATTCGGCTCGACCGTGTGTCACACAAC
GAGGACATTTATGATCCCTCCGCTTCCTCTTTGTGTTTGTTCTCACTTTC
TCCCTCCTTCTTTCCACCTGCCAATCCCAGGTGATGGTGTGAACGACGCT
CCCTCCCTCAAGGCCGCGGACGTGGGCATCGCCATGGGCAAGAACGGCAG
CGACGTGACCAAGCAAGCCGCCGATCTCATCCTCACCGACGACAAGTACG
TCTCTTCTGCCCTCTTCGTCTTTGCTGCTGCTTTTCTTCACTTCCAAGCT
GATGTTACCTCGCAAACGCTAACGCTTCTCTATCTCCCTTAATAATATAT
AATATATATATAATGCACTCTCAATCCCTAGCTTTGCCACGATCGTCGAG
GCCATCCGGGAAGGTCGCCGCATCGGCGCCAATATCGTCAAGTTTGTCTG
CCATCTTATGTCAGGTAAAGAGCATGGGAGAAGGGGGACAAGAGGAAACC
GCTGACATTGTGGTGCGTGTTCCGACTGACATGACCCTCGGACCGTCTTA
TTCCCTCTCCCAACGGCTCCTATTACTACACAGGAAATGTCGCCGAAGTC
ATCATCCTGCTCATCGGCCTGGCCTTTCGCGATTCCGATGATCTCTCCGT
CTATCCTCTCTCGACGCTGCAGATTCTCTGGATTAACATGGTTACCTCCA
CGCCGCCGGTACGTGCCCCCTTTTGTCCCGCCCCTCTCCTTTTCCCTTCC
TCCCTCTTCAAGAGCCCAGGCCACTCGGGTGGTCTTTTAAGTTGTCTCGA
TGGTTGGCTTATATAAACCTTTTATGAACCCTCAATCCACCACTGAACAT
CTGCCTGCTTCTCCCTCCCTCTGTACCTCGCTCCCTTCCTCCATCCAGGC
CCTGGGTCTGGCCTGCGAGAAAGCGGAGCCTGACGTGATGCGGAAGCCAC
CCGCGGAGAAAGGCAAACTGCTCGTGAACCGTGTCCTCGGTTTTGATACC
CTTTGGTATGGCTGTGTCATGGGCTTGCTCGGGTAAGTGTCGTCTGATCT
CCTTTCAACTTCCAACAGAAGAGTTCTGAAAGCTAGGATGCGAATAGTCA
TCGAAATAAAACGCTTGTCGGGATCGCTCTTTTAATATTTCCTCCTATCT
CATCTCCTCCTTCTTATCCCCCCTTTCACCCCCGTCAGTCTCGTAAATTT
TAGCTTGGTAGTCTACGCCAACGACGACGTCGGACTCCATCGCACAAGCG
CCTGTAACCACAACTTAGCTGGCTGCGAGAATGTTTACCGTGCCCGCGCC
ACGACGTTCGCAACCACCACGATTCTCCTTCTCATCCATGCGTACAATTG
CAAGGGCCTTGGCACATCATTGGGGAAGATGAACGTAAGTTGAAGAAAGG
ATTGGTCATCTTCCTGTAATGGACTCAAGTTTAGGAGCAAGGAGAGGAGA
GGATACATACGCTCACATAGTCACATGCATGCACGCGCGTATCTTCCCCT
GACGTCGAACGTATAATCCTGCCTTCAACTCACATTCAAATACAGTTCTT
TGAAAACCGCCTTCTCTTCGGCTCGGTTCTTTTAGGAATCGTCACGCTGC
TTCCCATCATCTATATCCCTTCGGTCGCGGAGAATGTGTTCTACCAAGCG
CCCATTAGCTGGGAGTGGGGTCTTGTCCTAGGAGCTTGTGTCATATTTAT
CTTCTGCTCAGAGGTTTACAAAGCGTGCATTCGTCCTTACATCGTCAGGT
GGGTAACGAGGGGAAGAGGTGAGCGAGAAATGATCATCACTTGAAATACA
GACCTTGACTTCACCCTTTTTCATTTACCTCCCTCTTCGTCTATTGTAGG
TTGTATCTGGAGGCCGCTGAGCGCCGGCGACAAGCGAATGATAGTCTATT
TGATGTGGCAGGAATGGAGCTTGTGGTGTTGTCCTAAATTGATGGAGGAG
AATTATATGGGGGGAAAGAGAGAAAACTCAGCACAAACAACCATGACGAC
GTTTGTAAGATGTTTATCTTGAATAAAGAAATCCAAAATACAAATGAGAG
TGATATTTAAAAAACATCCAAAATTCGAATGAACGTTTTAATAGAGACGA
TCTGGCAGATATGTTACGGGCGATTACGCTTAAAATAAAACAATGAGAAA
AAAAGATCTAGTCATACTCAGAATTTTCAATCAATACAAAAACTAAATTC
TATAAAAAGAAATAATTGACCAGGTATGGACGGCGGA

Coding sequence (CDS) from alignment at chr20:784336..791872-

>NO20G02510.1 ID=NO20G02510.1|Name=NO20G02510.1|organism=Nannochloropsis oceanica|type=CDS|length=2646bp|location=Sequence derived from alignment at chr20:784336..791872- (Nannochloropsis oceanica)
ATGGATAAGAATGGAGTTCATGCAGCCAAGGGAGAAGTGCAATTGGAAGG
GGGCATCAGCAACCATGGGACTGCCCTGTTCCAAACGTGCATGGAAAGGC
CCTACAACGCCACCTCTGACGAGGTTTTGAGTTACTACCAGACCTCCTCT
GAGCGAGGCCTCTCTCCTCAGGAGGTGGAAGAGCGGCGACTCGTTTTTGG
CCGCAACGCTCTGAAAGGCCGTCATTCCGTGCATCCTCTTGTCCTTCTCC
TGCGGCATTTGTTCAACGTCATGTCCCTGATTCTCTTTATTGCCGTGGCG
CTGGCCTTGGCGGTGGAGGAGTGGATCGAAGCGGGGGTGATAGGGTTCAT
CATCGTCCTCAACACAGTCGTGGGCTTTCTGCAGGAGTACAGCTCGGAGC
AGACCATGCAAGCGCTGCGTCGACTCAGCTCGCCCTTGGCCCGTGCCGTC
CGCGAATGCGATGTGGTGGAGCTGCCCGCGGACGAGCTCGTGCCCGGGGA
CATCATCAACCTGAAGGAGGGAGACCAGGTGCCGGCGGACGTTAGAATTT
TAACCGCCGTGGCCTTTAACGTCGAAGAAGCCATTTTGACAGGCGAGAGT
GTGGCAGTGAGCAAGGTGGTTGGGCCTATGAATTCCGCGGACCATGCGGG
ACAGGTCGAAAGGACGGATGAGCCCCTCGGCGTGGGCGACCGGAAGAACA
TGGCATTCTTCGGCTGTGTCGTCGGCCAAGGCCGCGCCATCGCCGTCGTC
ACTGCCACGGGCATGGAGACAGAGCTCGGGAAAATCGCTCATAGTATGGG
CGAACGCGGCAACACCAAGACAAATCTACAGCGCCAGCTGGAGTACCTGA
GCATCGGGCTCTTCCTCTTCGCCGTCCTGCTCGGTTTTGTCGTCATTGCG
GTCAATAAATTCAGCCTGGAGCACGAGACATTGCTGTATGCGATTGCCCT
GGCCGTGGCTCTCATCCCTGAGGGCCTCGTGCCCGTCGTCACTCTCTGCA
TGTCCATCGGCGTGCGCAAGATGGCCGAGGCCCGGACGATCGTCCGCCTT
CTCCCGGCTCTCGAGGCCCTGGGCAGTGTGACTGATATCTGCTCCGACAA
GACCGGCACCCTCACCCTTTCTCGAATGGTGGTGACCAATATCGTCCTTC
CCTCCACCTCCCCCTCCCTCCCTCCCTCCCCCCTGCACGTCTCTGGCCAC
GGGCTCGAGCCGGAGGGCAGGTTTTACAAAGGAGAAGGGGAGGACGGTAG
GGACAGGGGAAACGAGAAGGAGGAAGTGGATCCTAAGACTGAGCCAGGTC
TGATGCCCCTCCTGACGGTGGCGTCGCTCTGCAACTCCTCCTCTCTCGCC
TTCGACAAGAATCAGAACGAGTGGATCGCCGTCGGTGCTGCCACGGAGGT
GGCCCTCACGGTGTTGGCGCGCAAGGCCGGTCTTTTCAAGGAAAAGCCTT
CCTGCCCCGCGTCCTCTACTCCTCCCTCCTTCGAGACCGAGTTTCCCTTT
GACAGTGTACTGAAACGCATGTCTGTCGTCTACCGCCACCCGTCGTCCCC
CTCCTCCACCTTGCACGTCCTGACCAAGGGAGCCTTTGAGAGTGTGTGGA
GCGTGTGTGACTATGTCCGCACGGCGGATGGCGGGAAGAAGAGATGGGCG
AAGCAGCAGCAGCAGCCGGTGGAGCATGCCTTCTTCCTCGCTTGGCAGGG
GGAGGTGGAGCGCCTGGCGAGCAAGGGCCTACGCGTCCTGGCTTTCGCCG
AGCGAGTGGTGGAGGAAGGGGAGGAGAAAGGAAAGGAGGAGGGGGGAAAG
GGGGAGAAGGAGGGCAGAGAGAAAGCGAGGGAGGAGTGGGAAAATGGGAT
GGTGTTTCTCGGGCTCGTGGGCCTGATGGACCCGCCTCGACCGGAGACGC
GAGCCGCTGTGGACTCATGCCGCGAGGCCGGGATCGTCGTGCGCATGGTC
ACTGGCGACCACCCCAAGACCGCCGCAGCCATCGCCCGACAAGTCGCCAT
CCTCTCCCCGGACCAGAAGCTGCCCGAGGACTTGATTATGGCTGCCAAGG
ACTTCGACGCATGCGACGACTCTCAGCTCGATGCCTCCAAGTACCTGCCT
CGGGTGGTGGCCCGCTGCTCCCCTGCGACCAAAGTGAAGCTCATCGACGC
GCTGCACAGGAGGGGGAGGGTGGTGGCAATGACAGGTGATGGTGTGAACG
ACGCTCCCTCCCTCAAGGCCGCGGACGTGGGCATCGCCATGGGCAAGAAC
GGCAGCGACGTGACCAAGCAAGCCGCCGATCTCATCCTCACCGACGACAA
CTTTGCCACGATCGTCGAGGCCATCCGGGAAGGTCGCCGCATCGGCGCCA
ATATCGTCAAGTTTGTCTGCCATCTTATGTCAGGAAATGTCGCCGAAGTC
ATCATCCTGCTCATCGGCCTGGCCTTTCGCGATTCCGATGATCTCTCCGT
CTATCCTCTCTCGACGCTGCAGATTCTCTGGATTAACATGGTTACCTCCA
CGCCGCCGGCCCTGGGTCTGGCCTGCGAGAAAGCGGAGCCTGACGTGATG
CGGAAGCCACCCGCGGAGAAAGGCAAACTGCTCGTGAACCGTGTCCTCGG
TTTTGATACCCTTTGGTATGGCTGTGTCATGGGCTTGCTCGGGTAA

Synonyms

Publications