NO20G02400.1, NO20G02400.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G02400.1
Unique NameNO20G02400.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2652
Alignment locationchr20:726407..729058 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:726407..729058 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G02400.1 vs.
Match: XP_005854062.1 (glycosyl group 2 family protein, partial [Nannochloropsis gaditana CCMP526]; EKU22298.1 glycosyl group 2 family protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 627.9 bits (1618), Expect = 3.400e-176
Identity = 293/426 (68.78%), Postives = 353/426 (82.86%), Query Frame = 0 
Query:   11 ILGILACLLLGLSDAAGHNTSACLAMIMKNEGPILPRLFDSIRGFVSEYCVMDTGSTDDTVDVLRAIDMPGKILHGPFINFAQARNAMINQCREVMTSCDYFVLLDADMVLRVDPAWNWDDLDGKDVYNLIQISSVEYENVRIIRRTADRIKVVGATHEYYDVPDDYTRGLIPKDLVYIDDVGDGKAKGDKSQRDERLLRQELADDPNNPRTIFYLANTLRDMGRYADAIPYYEQRSHMDNGWWVERDYAVYMLSRCYLALDDVANARKYGELSASISNRAEPLYDLIYYLHHREQYALAWYYYTLASGIPKPPVDQALFIVLDIYAFWLDFEQATLSRHIYPTQPTLVLEAGLSFLNNVHAPQYLRNYFYKREWGSHTVQYLETTMSYHHYDATHAKTFWQFILHPTSSTASDNTTDVDNSCPLS 437
            + G + CL    +     NTS CLAMI+KNEGPILPRLFDS+RGFVSEYCVMDTGSTDDTVDVLR+ID+PG++LHGPFINFAQARN MI++CR++M SCDYF+LLDADM+L+V P W+W+ +D +DVYNLIQ S VEYENVR+IRRTAD+IKV+GATHEYYDVPD+Y+R LI KDL+YI+DVGDGKAKGDK +RDE LLRQ+L  DP+NPRT+FYLANTL+DM RYA+AIP YEQRS MDNGWWVERDYAVYML +CYL L+D++NARKYGEL+A IS RAEPLYDL+YYLHH E Y LAWYYYTLAS IPKP V + LFIV DIYAFWLDFE+ATLSRHI+P QP L L AG+SFLNN++APQYLR YFY+  W    ++ L +T++YHHY A+    FW  +L+ ++ T    +T  ++   +S
Sbjct:    7 VWGTIFCLQESNAIKRDTNTSVCLAMIIKNEGPILPRLFDSVRGFVSEYCVMDTGSTDDTVDVLRSIDVPGQVLHGPFINFAQARNLMIDECRKLMKSCDYFLLLDADMILKVHPEWSWNIIDDRDVYNLIQESKVEYENVRLIRRTADKIKVIGATHEYYDVPDEYSRELISKDLIYIEDVGDGKAKGDKFERDEYLLRQDLERDPSNPRTVFYLANTLKDMKRYAEAIPLYEQRSFMDNGWWVERDYAVYMLCKCYLGLEDLSNARKYGELAARISKRAEPLYDLVYYLHHNELYTLAWYYYTLASQIPKPAVKETLFIVGDIYAFWLDFEKATLSRHIFPDQPILALTAGVSFLNNMYAPQYLREYFYREAWIESIIKCLRSTVTYHHYHASQPDIFWHSVLNNSAETECRYSTSGESDRRIS 432
The following BLAST results are available for this feature:
BLAST of NO20G02400.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854062.13.400e-17668.78glycosyl group 2 family protein, partial [Nannochl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G02400NO20G02400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G02400.1NO20G02400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G02400.1.cds1NO20G02400.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G02400.1 ID=NO20G02400.1|Name=NO20G02400.1|organism=Nannochloropsis oceanica|type=mRNA|length=2652bp
CCTCGCTGATTTGCCAAGCCCATAATGGACCTTCCTCGTTCATCTACCTA
CAACCCAACCATACATGCAAACGTCCCCAGACATGCACCCAATTTAAGAG
TGCACCATTACCTCTCAGGTTGTCTAGGTGCGGTCAACGCTCGCGCGGTG
AGAGATGATGGTAGCCAGGCCATTTCATTTCGTGATGTCCGCCCTCTATC
TCGGCTACTTCAGGGCGGCTGCTCCTGCTGCTTCTGCAAGCGAAGCTTTG
AAATTCCCCCACCAACCATCTCCTGCAGACATCAGGAAATGCACCACGTG
GCAAATTGTTCGCCATAGTCTGCAGCTGTCGACCACATGTGGGGTGTTGG
GGGCTTTCATGCGGCGACATCTTTGCTGATTAGCAAAGCCCATGATGGAC
ATTTCACACCCATCTACCAACAGCCCACCCAGAAGTACACATCCAGACAT
GCACACGCACGATTATAAAATGTACAACACCCTCTCACGTCCATCGCCCG
TTCTAGGTGCTGACAAAGTAAAACTTATCAGTAGAACTAATTAGGAGAGT
GTCTAAAGTGTCTTCTCTTCTTTCTCAACCTCAAACATAGTATGAAGCCG
CTTCATCATCAATGCCTGGTCATTTTGGGTATTCTTGCATGTCTACTTTT
GGGACTTAGTGATGCGGCTGGCCATAACACCAGCGCTTGTCTTGCAATGA
TCATGAAGAACGAGGGGCCAATATTGCCCCGCCTTTTTGATAGTATTCGC
GGCTTTGTATCGGAATATTGTGTCATGGATACCGGCTCGACGGACGATAC
TGTGGATGTATTGAGAGCTATTGATATGCCGGGAAAGATTTTGCACGGAC
CCTTCATCAACTTTGCCCAGGCACGCAATGCGATGATCAATCAGTGCCGT
GAGGTGATGACCTCGTGTGATTACTTTGTGCTTCTGGATGCGGACATGGT
GCTGCGTGTTGATCCGGCATGGAATTGGGATGATCTGGATGGGAAGGATG
TGTACAATTTGATTCAGATCTCAAGTGTGGAGTACGAGAACGTGCGGATC
ATCCGTCGCACGGCAGACCGAATCAAGGTAGTGGGCGCAACCCATGAGTA
CTACGATGTGCCCGATGATTACACGCGAGGGCTGATCCCTAAAGACTTGG
TATATATTGATGACGTGGGCGATGGAAAAGCCAAAGGAGACAAATCACAA
CGCGATGAGCGGTTGCTCCGGCAGGAGCTTGCAGACGACCCAAACAATCC
ACGAACAATCTTTTACTTGGCAAATACCCTAAGGGATATGGGAAGGTACG
CCGACGCCATACCCTATTACGAGCAGCGCAGTCACATGGACAACGGATGG
TGGGTGGAACGGGACTATGCTGTGTACATGCTTTCTCGATGCTACCTGGC
GCTAGACGACGTCGCCAATGCTAGGAAGTACGGTGAGCTATCGGCGAGCA
TCTCGAACCGAGCAGAGCCTCTGTACGACTTGATCTACTATCTGCACCAC
CGCGAACAGTATGCCTTGGCATGGTATTACTATACTCTAGCGTCCGGTAT
CCCTAAACCTCCAGTGGACCAAGCATTGTTCATTGTCTTGGACATATATG
CTTTCTGGCTTGATTTCGAACAGGCGACGCTATCGCGGCATATTTATCCT
ACTCAACCCACACTTGTCCTTGAGGCAGGGTTATCGTTCTTGAACAATGT
GCATGCGCCCCAGTACTTGCGGAACTACTTTTACAAGAGAGAATGGGGCT
CACATACAGTGCAATATCTCGAGACTACCATGTCGTACCACCATTATGAT
GCGACACACGCCAAGACGTTCTGGCAGTTCATACTTCACCCAACATCCTC
AACAGCAAGTGATAATACCACCGATGTGGACAACTCGTGCCCTCTCAGCT
TATTGGAAGGACATAGACCCGAGGAACTCATGGACGATGAGACTCTTCCA
AACCACCTTCCATTATTTGCGACCATGCCTGAGGTGGAGGTGTCGTGCAT
AAACCAGTGGTACCCTATGCAGATAGGTAAAGTGGTGGAGGGGGTATGTG
AGGTGCACACCTCTGTTGCGACTCCTCGCAGTTTCTCGTTCCTAAGCAAA
GGCAGCAACGGTGCTCTATATCAAGACGCCACGTGGTTTTTAGCAAAGTC
GCATACCGAAGATACGGCATCAGGCAGAGTGCTTTTCCACTTTGTTGTCA
TAGATGCTAGTTCTCGCATCAAAACTTATACGTTGCCCTTTATGCTGAGG
GAGACGCCGTCTGGTACGAATGCCGAGACGGCTTTGTTCTTGCGAGAGGA
CGAAATCATCATCGTTTTCATTGATGGTGAGGATGCGGGGGACGTGACAT
CTGTGGTCCATCGCCTCCCGTTGATAGCTTTGGGCCCGTTGCTAGTGACA
GGACCTAAGCATTAAAAGGGTGCTGCTCCAGTTATGATAAACGTACTAAC
CTCTGCCATATATTATCCTCTTGAAGACTCTGTGCCTTTTATTTCGATTC
CGACGTGCTGTTCTCATTTCCCGGTACATGTACGATGGAACTAGCCTGTA
CCTAATTCCTCGTGTCAGTCTATTGAGAAAAAGTCAATCAATGCCAACCA
AAGAACCAATCACGAAGGCATTTAGACTAGCATTGACGTACCCATTTATC
TC
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protein sequence of NO20G02400.1

>NO20G02400.1-protein ID=NO20G02400.1-protein|Name=NO20G02400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=608bp
MKPLHHQCLVILGILACLLLGLSDAAGHNTSACLAMIMKNEGPILPRLFD
SIRGFVSEYCVMDTGSTDDTVDVLRAIDMPGKILHGPFINFAQARNAMIN
QCREVMTSCDYFVLLDADMVLRVDPAWNWDDLDGKDVYNLIQISSVEYEN
VRIIRRTADRIKVVGATHEYYDVPDDYTRGLIPKDLVYIDDVGDGKAKGD
KSQRDERLLRQELADDPNNPRTIFYLANTLRDMGRYADAIPYYEQRSHMD
NGWWVERDYAVYMLSRCYLALDDVANARKYGELSASISNRAEPLYDLIYY
LHHREQYALAWYYYTLASGIPKPPVDQALFIVLDIYAFWLDFEQATLSRH
IYPTQPTLVLEAGLSFLNNVHAPQYLRNYFYKREWGSHTVQYLETTMSYH
HYDATHAKTFWQFILHPTSSTASDNTTDVDNSCPLSLLEGHRPEELMDDE
TLPNHLPLFATMPEVEVSCINQWYPMQIGKVVEGVCEVHTSVATPRSFSF
LSKGSNGALYQDATWFLAKSHTEDTASGRVLFHFVVIDASSRIKTYTLPF
MLRETPSGTNAETALFLREDEIIIVFIDGEDAGDVTSVVHRLPLIALGPL
LVTGPKH*
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mRNA from alignment at chr20:726407..729058+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G02400.1 ID=NO20G02400.1|Name=NO20G02400.1|organism=Nannochloropsis oceanica|type=mRNA|length=2652bp|location=Sequence derived from alignment at chr20:726407..729058+ (Nannochloropsis oceanica)
CCTCGCTGATTTGCCAAGCCCATAATGGACCTTCCTCGTTCATCTACCTA
CAACCCAACCATACATGCAAACGTCCCCAGACATGCACCCAATTTAAGAG
TGCACCATTACCTCTCAGGTTGTCTAGGTGCGGTCAACGCTCGCGCGGTG
AGAGATGATGGTAGCCAGGCCATTTCATTTCGTGATGTCCGCCCTCTATC
TCGGCTACTTCAGGGCGGCTGCTCCTGCTGCTTCTGCAAGCGAAGCTTTG
AAATTCCCCCACCAACCATCTCCTGCAGACATCAGGAAATGCACCACGTG
GCAAATTGTTCGCCATAGTCTGCAGCTGTCGACCACATGTGGGGTGTTGG
GGGCTTTCATGCGGCGACATCTTTGCTGATTAGCAAAGCCCATGATGGAC
ATTTCACACCCATCTACCAACAGCCCACCCAGAAGTACACATCCAGACAT
GCACACGCACGATTATAAAATGTACAACACCCTCTCACGTCCATCGCCCG
TTCTAGGTGCTGACAAAGTAAAACTTATCAGTAGAACTAATTAGGAGAGT
GTCTAAAGTGTCTTCTCTTCTTTCTCAACCTCAAACATAGTATGAAGCCG
CTTCATCATCAATGCCTGGTCATTTTGGGTATTCTTGCATGTCTACTTTT
GGGACTTAGTGATGCGGCTGGCCATAACACCAGCGCTTGTCTTGCAATGA
TCATGAAGAACGAGGGGCCAATATTGCCCCGCCTTTTTGATAGTATTCGC
GGCTTTGTATCGGAATATTGTGTCATGGATACCGGCTCGACGGACGATAC
TGTGGATGTATTGAGAGCTATTGATATGCCGGGAAAGATTTTGCACGGAC
CCTTCATCAACTTTGCCCAGGCACGCAATGCGATGATCAATCAGTGCCGT
GAGGTGATGACCTCGTGTGATTACTTTGTGCTTCTGGATGCGGACATGGT
GCTGCGTGTTGATCCGGCATGGAATTGGGATGATCTGGATGGGAAGGATG
TGTACAATTTGATTCAGATCTCAAGTGTGGAGTACGAGAACGTGCGGATC
ATCCGTCGCACGGCAGACCGAATCAAGGTAGTGGGCGCAACCCATGAGTA
CTACGATGTGCCCGATGATTACACGCGAGGGCTGATCCCTAAAGACTTGG
TATATATTGATGACGTGGGCGATGGAAAAGCCAAAGGAGACAAATCACAA
CGCGATGAGCGGTTGCTCCGGCAGGAGCTTGCAGACGACCCAAACAATCC
ACGAACAATCTTTTACTTGGCAAATACCCTAAGGGATATGGGAAGGTACG
CCGACGCCATACCCTATTACGAGCAGCGCAGTCACATGGACAACGGATGG
TGGGTGGAACGGGACTATGCTGTGTACATGCTTTCTCGATGCTACCTGGC
GCTAGACGACGTCGCCAATGCTAGGAAGTACGGTGAGCTATCGGCGAGCA
TCTCGAACCGAGCAGAGCCTCTGTACGACTTGATCTACTATCTGCACCAC
CGCGAACAGTATGCCTTGGCATGGTATTACTATACTCTAGCGTCCGGTAT
CCCTAAACCTCCAGTGGACCAAGCATTGTTCATTGTCTTGGACATATATG
CTTTCTGGCTTGATTTCGAACAGGCGACGCTATCGCGGCATATTTATCCT
ACTCAACCCACACTTGTCCTTGAGGCAGGGTTATCGTTCTTGAACAATGT
GCATGCGCCCCAGTACTTGCGGAACTACTTTTACAAGAGAGAATGGGGCT
CACATACAGTGCAATATCTCGAGACTACCATGTCGTACCACCATTATGAT
GCGACACACGCCAAGACGTTCTGGCAGTTCATACTTCACCCAACATCCTC
AACAGCAAGTGATAATACCACCGATGTGGACAACTCGTGCCCTCTCAGCT
TATTGGAAGGACATAGACCCGAGGAACTCATGGACGATGAGACTCTTCCA
AACCACCTTCCATTATTTGCGACCATGCCTGAGGTGGAGGTGTCGTGCAT
AAACCAGTGGTACCCTATGCAGATAGGTAAAGTGGTGGAGGGGGTATGTG
AGGTGCACACCTCTGTTGCGACTCCTCGCAGTTTCTCGTTCCTAAGCAAA
GGCAGCAACGGTGCTCTATATCAAGACGCCACGTGGTTTTTAGCAAAGTC
GCATACCGAAGATACGGCATCAGGCAGAGTGCTTTTCCACTTTGTTGTCA
TAGATGCTAGTTCTCGCATCAAAACTTATACGTTGCCCTTTATGCTGAGG
GAGACGCCGTCTGGTACGAATGCCGAGACGGCTTTGTTCTTGCGAGAGGA
CGAAATCATCATCGTTTTCATTGATGGTGAGGATGCGGGGGACGTGACAT
CTGTGGTCCATCGCCTCCCGTTGATAGCTTTGGGCCCGTTGCTAGTGACA
GGACCTAAGCATTAAAAGGGTGCTGCTCCAGTTATGATAAACGTACTAAC
CTCTGCCATATATTATCCTCTTGAAGACTCTGTGCCTTTTATTTCGATTC
CGACGTGCTGTTCTCATTTCCCGGTACATGTACGATGGAACTAGCCTGTA
CCTAATTCCTCGTGTCAGTCTATTGAGAAAAAGTCAATCAATGCCAACCA
AAGAACCAATCACGAAGGCATTTAGACTAGCATTGACGTACCCATTTATC
TC
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Coding sequence (CDS) from alignment at chr20:726407..729058+

>NO20G02400.1 ID=NO20G02400.1|Name=NO20G02400.1|organism=Nannochloropsis oceanica|type=CDS|length=1824bp|location=Sequence derived from alignment at chr20:726407..729058+ (Nannochloropsis oceanica)
ATGAAGCCGCTTCATCATCAATGCCTGGTCATTTTGGGTATTCTTGCATG
TCTACTTTTGGGACTTAGTGATGCGGCTGGCCATAACACCAGCGCTTGTC
TTGCAATGATCATGAAGAACGAGGGGCCAATATTGCCCCGCCTTTTTGAT
AGTATTCGCGGCTTTGTATCGGAATATTGTGTCATGGATACCGGCTCGAC
GGACGATACTGTGGATGTATTGAGAGCTATTGATATGCCGGGAAAGATTT
TGCACGGACCCTTCATCAACTTTGCCCAGGCACGCAATGCGATGATCAAT
CAGTGCCGTGAGGTGATGACCTCGTGTGATTACTTTGTGCTTCTGGATGC
GGACATGGTGCTGCGTGTTGATCCGGCATGGAATTGGGATGATCTGGATG
GGAAGGATGTGTACAATTTGATTCAGATCTCAAGTGTGGAGTACGAGAAC
GTGCGGATCATCCGTCGCACGGCAGACCGAATCAAGGTAGTGGGCGCAAC
CCATGAGTACTACGATGTGCCCGATGATTACACGCGAGGGCTGATCCCTA
AAGACTTGGTATATATTGATGACGTGGGCGATGGAAAAGCCAAAGGAGAC
AAATCACAACGCGATGAGCGGTTGCTCCGGCAGGAGCTTGCAGACGACCC
AAACAATCCACGAACAATCTTTTACTTGGCAAATACCCTAAGGGATATGG
GAAGGTACGCCGACGCCATACCCTATTACGAGCAGCGCAGTCACATGGAC
AACGGATGGTGGGTGGAACGGGACTATGCTGTGTACATGCTTTCTCGATG
CTACCTGGCGCTAGACGACGTCGCCAATGCTAGGAAGTACGGTGAGCTAT
CGGCGAGCATCTCGAACCGAGCAGAGCCTCTGTACGACTTGATCTACTAT
CTGCACCACCGCGAACAGTATGCCTTGGCATGGTATTACTATACTCTAGC
GTCCGGTATCCCTAAACCTCCAGTGGACCAAGCATTGTTCATTGTCTTGG
ACATATATGCTTTCTGGCTTGATTTCGAACAGGCGACGCTATCGCGGCAT
ATTTATCCTACTCAACCCACACTTGTCCTTGAGGCAGGGTTATCGTTCTT
GAACAATGTGCATGCGCCCCAGTACTTGCGGAACTACTTTTACAAGAGAG
AATGGGGCTCACATACAGTGCAATATCTCGAGACTACCATGTCGTACCAC
CATTATGATGCGACACACGCCAAGACGTTCTGGCAGTTCATACTTCACCC
AACATCCTCAACAGCAAGTGATAATACCACCGATGTGGACAACTCGTGCC
CTCTCAGCTTATTGGAAGGACATAGACCCGAGGAACTCATGGACGATGAG
ACTCTTCCAAACCACCTTCCATTATTTGCGACCATGCCTGAGGTGGAGGT
GTCGTGCATAAACCAGTGGTACCCTATGCAGATAGGTAAAGTGGTGGAGG
GGGTATGTGAGGTGCACACCTCTGTTGCGACTCCTCGCAGTTTCTCGTTC
CTAAGCAAAGGCAGCAACGGTGCTCTATATCAAGACGCCACGTGGTTTTT
AGCAAAGTCGCATACCGAAGATACGGCATCAGGCAGAGTGCTTTTCCACT
TTGTTGTCATAGATGCTAGTTCTCGCATCAAAACTTATACGTTGCCCTTT
ATGCTGAGGGAGACGCCGTCTGGTACGAATGCCGAGACGGCTTTGTTCTT
GCGAGAGGACGAAATCATCATCGTTTTCATTGATGGTGAGGATGCGGGGG
ACGTGACATCTGTGGTCCATCGCCTCCCGTTGATAGCTTTGGGCCCGTTG
CTAGTGACAGGACCTAAGCATTAA
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Synonyms
Publications