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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr20 | genome | chr20:604278..607237 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO20G02040.2 vs.
Match: EWM22036.1 (Endonuclease/exonuclease/phosphatase [Nannochloropsis gaditana]) HSP 1 Score: 344.0 bits (881), Expect = 6.100e-91 Identity = 177/279 (63.44%), Postives = 214/279 (76.70%), Query Frame = 0
Query: 12 SRPASPRWLQPHKLARSLCVLLLMYAALLSPLRHQARAFNTLRPLSMSMPAVSTPLA--QRLRVVTYNILTPNYATPRDLPAHPAVHLNEQERLQKILTKLKAETVQGSVIALQEISRAWAGHLHVFFAREGYHFVHSGYGRPSSGFMGVGLAWPHSTLKAATVDISRLADAKPWPAPPPPGALTSLSRGLLRPFRRLLGTRGRGNGKDEDVMAAARDRSNTVIMAQLRSKES--EGLDFFIACYHMPCEFRRPPIMTVHAALLVQRLQALAQGKPHIV 287
+RP + W L R CV L M LS R ARA + L+MS S+ A ++LR+VTYNILTP+Y+TP+ LPAHP+++LNEQERL+KIL KL+ E QG+VIALQE+SRAWAGHLHVFF+R GYHFVHS YGRPSSGFMGVGLAWP STL+A ++ISRLADAKPWPA P PG L+S S L RPFR++ G + G++EDV+A+ARDRSN VI+A LRSK++ + +DFF+ACYHMPCEFRRP IMTVHAALLVQR+QALA KPHIV
Sbjct: 13 ARPVAKLW---SGLGRLRCVFLFMLTTFLSRGRQSARACRVVGLLTMSTSTSSSSFAPPKKLRMVTYNILTPSYSTPKSLPAHPSIYLNEQERLEKILEKLEPEIAQGAVIALQEVSRAWAGHLHVFFSRAGYHFVHSEYGRPSSGFMGVGLAWPQSTLEAVDIEISRLADAKPWPAAPSPGPLSSFSHRLFRPFRKIWGLQA---GREEDVLASARDRSNVVIVANLRSKQASPQDMDFFVACYHMPCEFRRPSIMTVHAALLVQRMQALAGSKPHIV 285
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO20G02040.2 ID=NO20G02040.2|Name=NO20G02040.2|organism=Nannochloropsis oceanica|type=mRNA|length=2520bp
CACGAACTATATGCATTCGCATGTTTTCTTCAAGTTCTGTTTCGCTGATT
TTCTCCTTTTATAGAGGGTGTACTGTAAGTCTATTTACTCTCCTTTGCTT
CCGTCACTACCTCTGCAATAGGCTTCGTCGTCTTGTACTCCTTTGGCAGC
TTTGATACCACATAACCGTACGAGGCCCGCTTCTTGCCCTCGGTCCAGAC
TGCCACGGACCGAATATGGCTCTTCTCCCGTAGTTGTCGCAGGACTTTGG
TCTTCAGAAAGGTTAGTGTTAGGCGCTCCTTTAGCGGTGATGTCGGCGGA
AGCGTCTCTTGCAATGCTTTGAAGATTTCGCGATTGTGTAGTGGCTTGCC
TTTTGCCCCGTGGATGAGCGAGAACACGGCATGTCGCAAATTAGACTGAG
GTATCGGAGCGGTGGTACCCTCAAAACTGGCGGCAGCGGTGGAGAAAGGG
CGTAGTCCGGGAAGGACAGAGGTCGTGATGACGGCGGTGCGAGGCAAGAG
ATTTGCGGCTTGTCGGGTGACACCGCGGGCCAGGGCCACGAGGGTGACAC
CATGCATTGTCGTCCTCGTTGTCGCTGACGTCTGTGGTATGGTGAAGAGT
GGATGGGGATCGTGGCATGGTAAGAAAGGTGGTTAGATGTTGGAGCAACC
GAAGCAAGGGAGGAACGGAAGCTGTGGGTCAAGCGAGAGCAACGTTTCCC
CCGACAAGACATAGCAGCCAAATACAACCACACACCGTCAGAGCCATCGC
AGGCGTCTTACACAGGCAGACGGCTCATTCAATAGTGCTCTTCAATATGC
ACACTTTGGACAGATATGACTGTAATTACGCAGCGCTCATTTGTCCCTTG
CTCGCGCCCCATACGACTCGACCTCCCCCCGTTCGTCGACGCTCAGTGAC
GATGCCGTACCCTACAAACCACCGCACAGAAGAGGAAGAGAAGAGACGCT
TCGTCCGCCATCCACAAAGGTACGCGACTTTAGATCTCTAAATGCCCTTG
CTCTACCCGGCAGGCAGTGTTTTGTCTCGTCCTGCGTCTCCCCGGTGGCT
GCAGCCCCACAAGTTAGCCCGCTCCCTCTGCGTGTTGCTGCTCATGTACG
CGGCACTCCTGAGCCCACTCCGACACCAAGCTCGAGCCTTCAATACCCTG
CGGCCCCTAAGCATGTCCATGCCTGCCGTTTCTACTCCATTGGCCCAAAG
ACTGCGGGTGGTGACGTACAACATCCTCACGCCCAACTACGCCACCCCCA
GGGACTTGCCGGCCCACCCAGCCGTGCATCTGAATGAGCAAGAGCGTCTG
CAAAAAATCCTGACTAAGCTTAAGGCAGAGACTGTACAAGGTTCAGTCAT
TGCTCTTCAGGAGATCTCCCGAGCCTGGGCAGGCCACTTGCACGTATTTT
TTGCGCGAGAGGGTTATCACTTCGTCCACTCTGGGTATGGACGCCCCTCA
AGTGGGTTCATGGGTGTGGGTCTTGCCTGGCCACATAGCACCCTTAAGGC
TGCCACTGTTGACATTTCTCGCCTTGCCGACGCCAAGCCCTGGCCCGCAC
CGCCCCCGCCCGGTGCCCTCACCTCCCTCTCCCGCGGCCTCCTGAGGCCC
TTTCGACGCTTGCTCGGAACGCGTGGCCGTGGGAACGGCAAGGACGAAGA
TGTCATGGCTGCGGCTCGCGACCGTTCGAACACTGTCATCATGGCACAGC
TCCGTAGCAAGGAGTCGGAAGGATTGGATTTTTTTATTGCTTGTTATCAC
ATGCCGTGTGAGTTCCGCCGACCACCTATCATGACGGTGCACGCCGCTCT
TCTTGTGCAGCGGTTGCAGGCCCTTGCGCAGGGAAAGCCGCACATCGTAA
CGGTATGTATAAATAAGTACGGAACAGGGGGGGGAGAAAGGGAAAAGAGG
TGGTGGTCGAAGATGCTCAGAGAAAGAATTGGAATGAGGATTTGCGTTCC
CTGTCTCTCTTTCTCCCATCATCAACTCCTTCACCTCCCCTCACCTCCAC
TCTCCCCATTTGCACACAGGGTGACTTTAATTTCCAACCCACGTGGCCGC
AGTACCAGCTCATCACGGAGGGCGAAATGCCCACCGAGCACGCCCACTAC
CCGCCCATGCCTCCCACCGACCCGTGGACCCCCCGCGTAGAGCAACCACT
TAAGTCGGCCTTAAAAGTCAAGTGGGGGCAAGAGCCAGACTTTACCTGTC
ATTCTTACGCGGACCGGGAGACGGGCGAGCGGTTTTGCGAGCCATTGGAC
TACATCTTTTTGTCGCCAGAGTGGAGAGTGGTCGATGCCGTTCAACTTCA
GAGCAAAAAAGATGCCCTCAACTTGCCCTGCCCTTTTCCTGATCAGGACG
AGCCGTCGGATCATGTCATGCTGTGGGCGGACTTGAGCCTGGAAAAATAA
CAGCCCAGGCGTGTGGAAGGTTGTTTAATCTGAAGAGAGGGGCAAAGAGA
TATAAATGTCGCGAAAAAGAACCAAAGCATGGTACTCATTAAGTATTATA
TTCAGACAATATTTCAATAC back to topprotein sequence of NO20G02040.2 >NO20G02040.2-protein ID=NO20G02040.2-protein|Name=NO20G02040.2|organism=Nannochloropsis oceanica|type=polypeptide|length=383bp
MPLLYPAGSVLSRPASPRWLQPHKLARSLCVLLLMYAALLSPLRHQARAF
NTLRPLSMSMPAVSTPLAQRLRVVTYNILTPNYATPRDLPAHPAVHLNEQ
ERLQKILTKLKAETVQGSVIALQEISRAWAGHLHVFFAREGYHFVHSGYG
RPSSGFMGVGLAWPHSTLKAATVDISRLADAKPWPAPPPPGALTSLSRGL
LRPFRRLLGTRGRGNGKDEDVMAAARDRSNTVIMAQLRSKESEGLDFFIA
CYHMPCEFRRPPIMTVHAALLVQRLQALAQGKPHIVTVCINKYGTGGGER
EKRWWSKMLRERIGMRICVPCLSFSHHQLLHLPSPPLSPFAHRVTLISNP
RGRSTSSSRRAKCPPSTPTTRPCLPPTRGPPA* back to topmRNA from alignment at chr20:604278..607237+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO20G02040.2 ID=NO20G02040.2|Name=NO20G02040.2|organism=Nannochloropsis oceanica|type=mRNA|length=2960bp|location=Sequence derived from alignment at chr20:604278..607237+ (Nannochloropsis oceanica)
CACGAACTATATGCATTCGCATGTTTTCTTCAAGTTCTGTTTCGCTGATT
TTCTCCTTTTATAGAGGGTGTACTGTAAGTCTATTTACTCTCCTTTGCTT
CCGTCACTACCTCTGCAATAGGCTTCGTCGTCTTGTACTCCTTTGGCAGC
TTTGATACCACATAACCGTACGAGGCCCGCTTCTTGCCCTCGGTCCAGAC
TGCCACGGACCGAATATGGCTCTTCTCCCGTAGTTGTCGCAGGACTTTGG
TCTTCAGAAAGGTTAGTGTTAGGCGCTCCTTTAGCGGTGATGTCGGCGGA
AGCGTCTCTTGCAATGCTTTGAAGATTTCGCGATTGTGTAGTGGCTTGCC
TTTTGCCCCGTGGATGAGCGAGAACACGGCATGTCGCAAATTAGACTGAG
GTATCGGAGCGGTGGTACCCTCAAAACTGGCGGCAGCGGTGGAGAAAGGG
CGTAGTCCGGGAAGGACAGAGGTCGTGATGACGGCGGTGCGAGGCAAGAG
ATTTGCGGCTTGTCGGGTGACACCGCGGGCCAGGGCCACGAGGGTGACAC
CATGCATTGTCGTCCTCGTTGTCGCTGACGTCTGTGGTATGGTGAAGAGT
GGATGGGGATCGTGGCATGGTAAGAAAGGTGGTTAGATGTTGGAGCAACC
GAAGCAAGGGAGGAACGGAAGCTGTGGGTCAAGCGAGAGCAACGTTTCCC
CCGACAAGACATAGCAGCCAAATACAACCACACACCGTCAGAGCCATCGC
AGGCGTCTTACACAGGCAGACGGCTCATTCAATAGTGCTCTTCAATATGC
ACACTTTGGACAGATATGACTGTAATTACGCAGCGCTCATTTGTCCCTTG
CTCGCGCCCCATACGACTCGACCTCCCCCCGTTCGTCGACGCTCAGTGAC
GATGCCGTACCCTACAAACCACCGCACAGAAGAGGAAGAGAAGAGACGCT
TCGTCCGCCATCCACAAAGGTACGCGACTTTAGATCTCTAAATGCCCTTG
CTCTACCCGGCAGGCAGTGTTTTGTCTCGTCCTGCGTCTCCCCGGTGGCT
GCAGCCCCACAAGTTAGCCCGCTCCCTCTGCGTGTTGCTGCTCATGTACG
CGGCACTCCTGAGCCCACTCCGACACCAAGCTCGAGCCTTCAATACCCTG
CGGCCCCTAAGCATGTCCATGCCTGCCGTTTCTACTCCATTGGCCCAAAG
ACTGCGGGTGGTGACGTACAACATCCTCACGCCCAACTACGCCACCCCCA
GGGACTTGCCGGTGCGTATTTCCTTCTTACTCATTACCTTCGAATCTTAC
CTCCGTGCTTTTTTCTCATGATGCGTTATGCCACAACTTGTACACGTAAC
AATCGTTCATCACTTCCGCCGGGCACTTTACTCGCGCTTTCATATCCCCT
TCGCTTCTTTGATTCTTCCTGCCTCCCATTCTCTTTCTACAGGCCCACCC
AGCCGTGCATCTGAATGAGCAAGAGCGTCTGCAAAAAATCCTGACTAAGC
TTAAGGCAGAGACTGTACAAGGTTCAGTCATTGCTCTTCAGGAGATCTCC
CGAGCCTGGGCAGGCCACTTGCACGTATTTTTTGCGCGAGAGGGTTATCA
CTTCGTCCACTCTGGGTATGGACGCCCCTCAAGTGGGTTCATGGGTGTGG
GTCTTGCCTGGCCACATAGCACCCTTAAGGCTGCCACTGTTGACATTTCT
CGCCTTGCCGACGCCAAGCCCTGGCCCGCACCGCCCCCGCCCGGTGCCCT
CACCTCCCTCTCCCGCGGCCTCCTGAGGCCCTTTCGACGCTTGCTCGGAA
CGCGTGGCCGTGGGAACGGCAAGGACGAAGATGTCATGGCTGCGGCTCGC
GACCGTTCGAACACTGTCATCATGGCACAGCTCCGTAGCAAGGAGTCGGA
AGGATTGGATTTTTTTATTGCTTGTTATCACATGCCGTGTGAGTTCCGCC
GACCACCTATCATGACGGTGCACGCCGCTCTTCTTGTGCAGCGGTTGCAG
GCCCTTGCGCAGGGAAAGCCGCACATCGTAACGGTATGTATAAATAAGTA
CGGAACAGGGGGGGGAGAAAGGGAAAAGAGGTGGTGGTCGAAGATGCTCA
GAGAAAGAATTGGAATGAGGATTTGCGTTCCCTGTCTCTCTTTCTCCCAT
CATCAACTCCTTCACCTCCCCTCACCTCCACTCTCCCCATTTGCACACAG
GGTGACTTTAATTTCCAACCCACGTGGCCGCAGTACCAGCTCATCACGGA
GGGCGAAATGCCCACCGAGCACGCCCACTACCCGCCCATGCCTCCCACCG
ACCCGTGGACCCCCCGCGTAGAGCAACCACTTAAGTCGGCCTTAAAAGTC
AAGTGGGGGCAAGAGCCAGACTTTACCTGTCATTCTTACGCGGACCGGGT
ACGTTAATGAGGAAGGAAGGGGGTGTTGAAGCAGGAGGGAACGAGGGGAG
AAAGGGGAGAGCGAGGCCCATCCATGACACTCATTTTACCCGGTCCAATG
TAACGCACACCGACATACACACACCAGGAGACGGGCGAGCGGTTTTGCGA
GCCATTGGACTACATCTTTTTGTCGCCAGAGTGGAGAGTGGTCGATGCCG
TTCAACTTCAGAGCAAAAAAGATGCCCTCAACTTGCCCTGCCCTTTTCCT
GATCAGGTAGGCAAGGGAGGAAGGGAAGCTTGGGGAAGAGAGTGGACGGG
TTGAATGAGCTCGAGGAGACAAGGATGCGTGAACATTTAGAAATACGATC
TCATTCGGTCATATTTATCGATTTCATTTTCTACAGGACGAGCCGTCGGA
TCATGTCATGCTGTGGGCGGACTTGAGCCTGGAAAAATAACAGCCCAGGC
GTGTGGAAGGTTGTTTAATCTGAAGAGAGGGGCAAAGAGATATAAATGTC
GCGAAAAAGAACCAAAGCATGGTACTCATTAAGTATTATATTCAGACAAT
ATTTCAATAC back to topCoding sequence (CDS) from alignment at chr20:604278..607237+ >NO20G02040.2 ID=NO20G02040.2|Name=NO20G02040.2|organism=Nannochloropsis oceanica|type=CDS|length=1149bp|location=Sequence derived from alignment at chr20:604278..607237+ (Nannochloropsis oceanica)
ATGCCCTTGCTCTACCCGGCAGGCAGTGTTTTGTCTCGTCCTGCGTCTCC
CCGGTGGCTGCAGCCCCACAAGTTAGCCCGCTCCCTCTGCGTGTTGCTGC
TCATGTACGCGGCACTCCTGAGCCCACTCCGACACCAAGCTCGAGCCTTC
AATACCCTGCGGCCCCTAAGCATGTCCATGCCTGCCGTTTCTACTCCATT
GGCCCAAAGACTGCGGGTGGTGACGTACAACATCCTCACGCCCAACTACG
CCACCCCCAGGGACTTGCCGGCCCACCCAGCCGTGCATCTGAATGAGCAA
GAGCGTCTGCAAAAAATCCTGACTAAGCTTAAGGCAGAGACTGTACAAGG
TTCAGTCATTGCTCTTCAGGAGATCTCCCGAGCCTGGGCAGGCCACTTGC
ACGTATTTTTTGCGCGAGAGGGTTATCACTTCGTCCACTCTGGGTATGGA
CGCCCCTCAAGTGGGTTCATGGGTGTGGGTCTTGCCTGGCCACATAGCAC
CCTTAAGGCTGCCACTGTTGACATTTCTCGCCTTGCCGACGCCAAGCCCT
GGCCCGCACCGCCCCCGCCCGGTGCCCTCACCTCCCTCTCCCGCGGCCTC
CTGAGGCCCTTTCGACGCTTGCTCGGAACGCGTGGCCGTGGGAACGGCAA
GGACGAAGATGTCATGGCTGCGGCTCGCGACCGTTCGAACACTGTCATCA
TGGCACAGCTCCGTAGCAAGGAGTCGGAAGGATTGGATTTTTTTATTGCT
TGTTATCACATGCCGTGTGAGTTCCGCCGACCACCTATCATGACGGTGCA
CGCCGCTCTTCTTGTGCAGCGGTTGCAGGCCCTTGCGCAGGGAAAGCCGC
ACATCGTAACGGTATGTATAAATAAGTACGGAACAGGGGGGGGAGAAAGG
GAAAAGAGGTGGTGGTCGAAGATGCTCAGAGAAAGAATTGGAATGAGGAT
TTGCGTTCCCTGTCTCTCTTTCTCCCATCATCAACTCCTTCACCTCCCCT
CACCTCCACTCTCCCCATTTGCACACAGGGTGACTTTAATTTCCAACCCA
CGTGGCCGCAGTACCAGCTCATCACGGAGGGCGAAATGCCCACCGAGCAC
GCCCACTACCCGCCCATGCCTCCCACCGACCCGTGGACCCCCCGCGTAG back to top
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