NO20G00970.1, NO20G00970.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO20G00970.1
Unique Name	NO20G00970.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1707
Alignment location	chr20:312790..315106 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr20	genome	chr20:312790..315106 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO20G00970.1 vs.
Match: EWM22119.1 (cellular apoptosis susceptibility protein [Nannochloropsis gaditana])

HSP 1 Score: 868.6 bits (2243), Expect = 1.100e-248
Identity = 435/558 (77.96%), Postives = 482/558 (86.38%), Query Frame = 0

Query:    1 MQGNAEALAMVPGVLLKTLSADKAQRQEAEAFLQNIYNQPGCAMLLFQIIEMHATGPAEPDVSIRQAAAVSFKNLVRKRWAPGSEDDDTDSSKLQGMSQEDKEQVKQNILNLMCAVPNDIQKQLSEALTIISTHDFPDKWPGLLPDMVTKFSSRDLHIINGVLRSANAIMKRFRYAFKSDALFAQLLFCLQNFAGPLTELLTWAGGVLEEAAKANDKGRLVVVMETMRLCCRIFFSLNWQDLPEFFEDNMERWMAVFATLLAFTHRSLVEEEEEERPGPLELVRAAVVENLNLYATKYEEEFQPHLNTFATAVWELLKASGTTASQPKFDGLVTVSMRFLASLAGKRMHFALFNNTTLLRQIVEAIVVPNLTMREEDEYLFEDNPTEYIQRDMEGSDQDTRRRCACDLVRALCGQFDEVVTGICLEYIQNMLGLYQSNPSNWKSKDAAIHLMLAITVRAESAAKGASQLNERVDVLAFYNAHILPELEDQSLNARPIIKADCLKFVTCFRQSLNVGMMLAVCPLLISHLGGVHAVVQTYAAHCLERLLNVKDPTVVGG 559
            MQGNAEALAMVPGVLLKTLSADK QRQEAE FL+ +Y QPGCAML FQIIEMHATGPAEPD+SIRQAAAVSFKNLVR  W   S+ ++ ++     M+  DK+ VKQ+ILNLMC VPND+QKQLSEALTIIS+HDFPD+WPGLLP+MV KFSS+D H+INGVLRSANAI KRFRYAFKSDALFAQLLFCLQNFA PLTEL TWA   LEEAAK NDK RL+  MET+RLCCRIFFSLNWQDLPEFFEDNM  WM++FA LL F H  LV+E E+++PGPLE VRAAVVEN+NLYATKYEEEFQPHLN FATAVWELL+ SGTT + PK+D LVTVSMRFLASLAGK+MH+ALFNN TLLRQI+EAIVVPN+TMRE++EY+FEDNPTEYIQRDMEGSDQDTRRRC+ DLVRALC QFD  VT I LEYI NML LYQSNPSNWKSKDAAI LMLAITVR ESAAKGAS +N++VDV+AFY AHILPELED +L+ARPI+KAD LKFVT FRQ  +V  +LAV PLLI  LG  HAVVQTYAAHCLER+LNVKD    GG
Sbjct:    1 MQGNAEALAMVPGVLLKTLSADKTQRQEAEQFLKKLYGQPGCAMLFFQIIEMHATGPAEPDISIRQAAAVSFKNLVRTGWE--SKKEEGEAVDAPSMAHADKDMVKQHILNLMCLVPNDVQKQLSEALTIISSHDFPDQWPGLLPEMVAKFSSQDFHVINGVLRSANAIFKRFRYAFKSDALFAQLLFCLQNFAAPLTELFTWAEARLEEAAKTNDKPRLLATMETLRLCCRIFFSLNWQDLPEFFEDNMAPWMSIFAKLLRFRHPLLVDESEDDKPGPLEAVRAAVVENVNLYATKYEEEFQPHLNIFATAVWELLETSGTTGALPKYDALVTVSMRFLASLAGKQMHYALFNNPTLLRQILEAIVVPNVTMREDEEYMFEDNPTEYIQRDMEGSDQDTRRRCSSDLVRALCQQFDADVTRIGLEYIGNMLNLYQSNPSNWKSKDAAIQLMLAITVRGESAAKGASIINDKVDVMAFYTAHILPELEDPALDARPILKADGLKFVTVFRQQFSVQALLAVMPLLIKLLGSAHAVVQTYAAHCLERILNVKDRNERGG 556

The following BLAST results are available for this feature:

BLAST of NO20G00970.1 vs.

BLAST of NO20G00970.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM22119.1	1.100e-248	77.96	cellular apoptosis susceptibility protein [Nannoch...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO20G00970	NO20G00970	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO20G00970.1	NO20G00970.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO20G00970.1.cds1	NO20G00970.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G00970.1.cds2	NO20G00970.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G00970.1.cds3	NO20G00970.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G00970.1.cds4	NO20G00970.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr20:312790..315106+
coding sequence from alignment at chr20:312790..315106+

mRNA sequence

>NO20G00970.1 ID=NO20G00970.1|Name=NO20G00970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1707bp
ATGCAGGGCAATGCCGAGGCCTTGGCTATGGTGCCAGGGGTGTTACTCAA
GACCCTGTCGGCGGATAAGGCACAGCGTCAAGAGGCGGAAGCATTTCTGC
AGAACATTTACAATCAACCCGGTTGTGCCATGCTTCTTTTTCAAATCATC
GAAATGCATGCCACAGGCCCCGCTGAACCCGACGTGTCGATCCGGCAAGC
TGCCGCCGTCTCGTTCAAGAACCTCGTTCGGAAACGATGGGCACCCGGGA
GTGAGGACGATGACACCGACAGCAGCAAGCTTCAAGGCATGTCCCAAGAA
GACAAAGAGCAGGTCAAGCAAAACATTCTCAACCTCATGTGCGCCGTGCC
CAACGACATACAAAAACAACTCTCCGAGGCGTTAACCATCATCAGTACGC
ATGATTTCCCGGACAAATGGCCGGGGCTACTCCCGGACATGGTGACGAAA
TTTTCCTCTCGAGACTTACACATAATCAACGGCGTGCTTCGCTCAGCCAA
TGCCATCATGAAGAGGTTCAGGTATGCGTTCAAGAGTGACGCGCTCTTCG
CTCAGCTTCTCTTCTGTCTGCAGAATTTCGCCGGGCCACTGACGGAGCTC
CTGACATGGGCCGGAGGGGTGTTGGAGGAGGCGGCCAAGGCAAATGATAA
AGGGAGGTTGGTGGTGGTGATGGAGACGATGCGGTTGTGCTGCCGAATAT
TTTTTTCGTTGAACTGGCAAGATTTGCCCGAGTTTTTTGAAGACAACATG
GAGAGGTGGATGGCAGTGTTTGCCACGCTGTTGGCGTTCACGCATCGCTC
GCTGGTTGAAGAGGAGGAGGAGGAGCGGCCAGGACCGTTGGAGCTCGTGC
GGGCAGCTGTGGTGGAAAATTTAAATTTGTATGCCACTAAATATGAGGAG
GAGTTTCAACCGCATTTGAACACGTTCGCAACGGCGGTGTGGGAGTTGCT
GAAGGCTTCAGGGACGACTGCGAGCCAACCGAAATTCGACGGGCTGGTAA
CAGTGTCGATGCGCTTCCTGGCCTCTTTGGCGGGGAAACGGATGCACTTT
GCCTTGTTCAATAACACGACGTTGTTACGACAGATCGTGGAGGCGATCGT
GGTGCCGAACTTGACCATGAGGGAGGAGGATGAATACCTCTTTGAGGACA
ATCCCACGGAATACATCCAGCGGGACATGGAGGGAAGCGACCAGGATACC
CGGAGGCGATGTGCCTGTGACTTGGTGCGGGCGTTGTGTGGGCAGTTCGA
CGAGGTGGTGACTGGCATCTGCTTGGAGTACATCCAGAACATGCTGGGGC
TATACCAGAGTAACCCATCCAACTGGAAAAGCAAAGACGCGGCCATCCAT
CTCATGCTCGCCATTACGGTCCGCGCCGAATCCGCCGCCAAGGGTGCCAG
CCAGCTGAATGAGCGTGTGGACGTGCTGGCGTTTTACAACGCACACATCC
TCCCCGAGCTCGAGGACCAATCTTTGAACGCCCGTCCGATCATCAAAGCA
GATTGTCTCAAGTTCGTCACGTGTTTCAGGCAATCGCTTAATGTGGGGAT
GATGCTGGCGGTGTGTCCCTTGTTAATCTCGCATCTGGGGGGGGTCCATG
CGGTAGTCCAGACCTATGCCGCTCATTGTCTGGAGAGGCTGCTGAACGTG
AAGGACCCAACGGTGGTGGGGGGAGGAGGGGGGGAACTCTGTGGGTCCGA
AGGCTAG

protein sequence of NO20G00970.1

>NO20G00970.1-protein ID=NO20G00970.1-protein|Name=NO20G00970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=569bp
MQGNAEALAMVPGVLLKTLSADKAQRQEAEAFLQNIYNQPGCAMLLFQII
EMHATGPAEPDVSIRQAAAVSFKNLVRKRWAPGSEDDDTDSSKLQGMSQE
DKEQVKQNILNLMCAVPNDIQKQLSEALTIISTHDFPDKWPGLLPDMVTK
FSSRDLHIINGVLRSANAIMKRFRYAFKSDALFAQLLFCLQNFAGPLTEL
LTWAGGVLEEAAKANDKGRLVVVMETMRLCCRIFFSLNWQDLPEFFEDNM
ERWMAVFATLLAFTHRSLVEEEEEERPGPLELVRAAVVENLNLYATKYEE
EFQPHLNTFATAVWELLKASGTTASQPKFDGLVTVSMRFLASLAGKRMHF
ALFNNTTLLRQIVEAIVVPNLTMREEDEYLFEDNPTEYIQRDMEGSDQDT
RRRCACDLVRALCGQFDEVVTGICLEYIQNMLGLYQSNPSNWKSKDAAIH
LMLAITVRAESAAKGASQLNERVDVLAFYNAHILPELEDQSLNARPIIKA
DCLKFVTCFRQSLNVGMMLAVCPLLISHLGGVHAVVQTYAAHCLERLLNV
KDPTVVGGGGGELCGSEG*

mRNA from alignment at chr20:312790..315106+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO20G00970.1 ID=NO20G00970.1|Name=NO20G00970.1|organism=Nannochloropsis oceanica|type=mRNA|length=2317bp|location=Sequence derived from alignment at chr20:312790..315106+ (Nannochloropsis oceanica)
ATGCAGGGCAATGCCGAGGCCTTGGCTATGGTGCCAGGGGTGTTACTCAA
GACCCTGTCGGCGGATAAGGCACAGGTATGTACGGAGAGAGACGACAACA
CGTGTGTGCCTTTGTTCTACGACCGACCACCCTAGCTACGGCTCGTCTCA
GCCCCTCTCTCGGCCGAGTCCAGATGCTTATTTGCGATTCAGGGATGGCG
GGGCTCCCTTTTTCCTCTAACTGCCCTTATTCCGTCGGCTCGCTTTTCCA
ATATTCAGTCGGCCACTCACCGTCATTCCCCTTATCTCCCTCCCTCCCTC
CTTCCCTCCCCTCCATCCCCTCCGCCACTCCCATCCCAGCGTCAAGAGGC
GGAAGCATTTCTGCAGAACATTTACAATCAACCCGGTTGTGCCATGCTTC
TTTTTCAAATCATCGAAATGCATGCCACAGGCCCCGCTGAACCCGACGTG
TCGATCCGGCAAGCTGCCGCCGTCTCGTTCAAGAACCTCGTTCGGAAACG
ATGGGCACCCGGGAGTGAGGACGATGACACCGACAGCAGCAAGCTTCAAG
GCATGTCCCAAGAAGACAAAGAGCAGGTCAAGCAAAACATTCTCAACCTC
ATGTGCGCCGTGCCCAACGACATACAAAAACAACTCTCCGAGGCGTTAAC
CATCATCAGTACGCATGATTTCCCGGACAAATGGCCGGGGCTACTCCCGG
ACATGGTGACGAAATTTTCCTCTCGAGACTTACACATAATCAACGGCGTG
CTTCGCTCAGCCAATGCCATCATGAAGAGGTTCAGGCAAGTGGTTCTACG
TTGGCCGAGCCTTCAATCCCTCCCTCCTTTCTTGCCTGGGCTGTCGTCAT
TAGTTTCTATAGAAAGTCAGCTCTTCGCCTCCTCCTTCCCTCCCTCCATT
GATCTCCCTCTCTTCCCCTCGCTATCGTCGCTTCATTCCCTTTCCTTCAT
TACTTTTCCCATACCCCCCTACCCCTAGGTATGCGTTCAAGAGTGACGCG
CTCTTCGCTCAGCTTCTCTTCTGTCTGCAGAATTTCGCCGGGCCACTGAC
GGAGCTCCTGACATGGGCCGGAGGGGTGTTGGAGGAGGCGGCCAAGGCAA
ATGATAAAGGGAGGTTGGTGGTGGTGATGGAGACGATGCGGTTGTGCTGC
CGAATATTTTTTTCGTTGAACTGGCAAGATTTGCCCGAGTTTTTTGAAGA
CAACATGGAGAGGTGGATGGCAGTGTTTGCCACGCTGTTGGCGTTCACGC
ATCGCTCGCTGGTTGAAGAGGAGGAGGAGGAGCGGCCAGGACCGTTGGAG
CTCGTGCGGGCAGCTGTGGTGGAAAATTTAAATTTGTATGCCACTAAATA
TGAGGAGGAGTTTCAACCGCATTTGAACACGTTCGCAACGGCGGTGTGGG
AGTTGCTGAAGGCTTCAGGGACGACTGCGAGCCAACCGAAATTCGACGGG
CTGGTAACAGTGTCGATGCGCTTCCTGGCCTCTTTGGCGGGGAAACGGAT
GCACTTTGCCTTGTTCAATAACACGACGTTGTTACGACAGATCGTGGAGG
CGATCGTGGTGCCGAACTTGACCATGAGGGAGGAGGATGAATACCTCTTT
GAGGACAATCCCACGGAATACATCCAGCGGGACATGGAGGGAAGCGACCA
GGATACCCGGAGGCGATGTGCCTGTGACTTGGTGCGGGCGTTGTGTGGGC
AGTTCGACGAGGTGGTGACTGGCATCTGCTTGGAGTACATCCAGAACATG
CTGGGGCTATACCAGAGGTACGTCTGGTGTGTCCTTCCATCATTCACTCT
CTTTCTCTTCTCCTTCCCATCCTCCAATCCTCCCTCCCTCCGTAGAGCCG
CAAAGACTGCCCGGATCTGATCTTTTCCTCGCTCCCTCCCTCCTTCCCTC
GCTCCCTTCCTTCCTGACAGTAACCCATCCAACTGGAAAAGCAAAGACGC
GGCCATCCATCTCATGCTCGCCATTACGGTCCGCGCCGAATCCGCCGCCA
AGGGTGCCAGCCAGCTGAATGAGCGTGTGGACGTGCTGGCGTTTTACAAC
GCACACATCCTCCCCGAGCTCGAGGACCAATCTTTGAACGCCCGTCCGAT
CATCAAAGCAGATTGTCTCAAGTTCGTCACGTGTTTCAGGCAATCGCTTA
ATGTGGGGATGATGCTGGCGGTGTGTCCCTTGTTAATCTCGCATCTGGGG
GGGGTCCATGCGGTAGTCCAGACCTATGCCGCTCATTGTCTGGAGAGGCT
GCTGAACGTGAAGGACCCAACGGTGGTGGGGGGAGGAGGGGGGGAACTCT
GTGGGTCCGAAGGCTAG

Coding sequence (CDS) from alignment at chr20:312790..315106+

>NO20G00970.1 ID=NO20G00970.1|Name=NO20G00970.1|organism=Nannochloropsis oceanica|type=CDS|length=1707bp|location=Sequence derived from alignment at chr20:312790..315106+ (Nannochloropsis oceanica)
ATGCAGGGCAATGCCGAGGCCTTGGCTATGGTGCCAGGGGTGTTACTCAA
GACCCTGTCGGCGGATAAGGCACAGCGTCAAGAGGCGGAAGCATTTCTGC
AGAACATTTACAATCAACCCGGTTGTGCCATGCTTCTTTTTCAAATCATC
GAAATGCATGCCACAGGCCCCGCTGAACCCGACGTGTCGATCCGGCAAGC
TGCCGCCGTCTCGTTCAAGAACCTCGTTCGGAAACGATGGGCACCCGGGA
GTGAGGACGATGACACCGACAGCAGCAAGCTTCAAGGCATGTCCCAAGAA
GACAAAGAGCAGGTCAAGCAAAACATTCTCAACCTCATGTGCGCCGTGCC
CAACGACATACAAAAACAACTCTCCGAGGCGTTAACCATCATCAGTACGC
ATGATTTCCCGGACAAATGGCCGGGGCTACTCCCGGACATGGTGACGAAA
TTTTCCTCTCGAGACTTACACATAATCAACGGCGTGCTTCGCTCAGCCAA
TGCCATCATGAAGAGGTTCAGGTATGCGTTCAAGAGTGACGCGCTCTTCG
CTCAGCTTCTCTTCTGTCTGCAGAATTTCGCCGGGCCACTGACGGAGCTC
CTGACATGGGCCGGAGGGGTGTTGGAGGAGGCGGCCAAGGCAAATGATAA
AGGGAGGTTGGTGGTGGTGATGGAGACGATGCGGTTGTGCTGCCGAATAT
TTTTTTCGTTGAACTGGCAAGATTTGCCCGAGTTTTTTGAAGACAACATG
GAGAGGTGGATGGCAGTGTTTGCCACGCTGTTGGCGTTCACGCATCGCTC
GCTGGTTGAAGAGGAGGAGGAGGAGCGGCCAGGACCGTTGGAGCTCGTGC
GGGCAGCTGTGGTGGAAAATTTAAATTTGTATGCCACTAAATATGAGGAG
GAGTTTCAACCGCATTTGAACACGTTCGCAACGGCGGTGTGGGAGTTGCT
GAAGGCTTCAGGGACGACTGCGAGCCAACCGAAATTCGACGGGCTGGTAA
CAGTGTCGATGCGCTTCCTGGCCTCTTTGGCGGGGAAACGGATGCACTTT
GCCTTGTTCAATAACACGACGTTGTTACGACAGATCGTGGAGGCGATCGT
GGTGCCGAACTTGACCATGAGGGAGGAGGATGAATACCTCTTTGAGGACA
ATCCCACGGAATACATCCAGCGGGACATGGAGGGAAGCGACCAGGATACC
CGGAGGCGATGTGCCTGTGACTTGGTGCGGGCGTTGTGTGGGCAGTTCGA
CGAGGTGGTGACTGGCATCTGCTTGGAGTACATCCAGAACATGCTGGGGC
TATACCAGAGTAACCCATCCAACTGGAAAAGCAAAGACGCGGCCATCCAT
CTCATGCTCGCCATTACGGTCCGCGCCGAATCCGCCGCCAAGGGTGCCAG
CCAGCTGAATGAGCGTGTGGACGTGCTGGCGTTTTACAACGCACACATCC
TCCCCGAGCTCGAGGACCAATCTTTGAACGCCCGTCCGATCATCAAAGCA
GATTGTCTCAAGTTCGTCACGTGTTTCAGGCAATCGCTTAATGTGGGGAT
GATGCTGGCGGTGTGTCCCTTGTTAATCTCGCATCTGGGGGGGGTCCATG
CGGTAGTCCAGACCTATGCCGCTCATTGTCTGGAGAGGCTGCTGAACGTG
AAGGACCCAACGGTGGTGGGGGGAGGAGGGGGGGAACTCTGTGGGTCCGA
AGGCTAG

Synonyms

Publications