|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr20 | genome | chr20:116608..120901 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO20G00350.2 vs.
Match: XP_005854199.1 (hypothetical protein NGA_0187100, partial [Nannochloropsis gaditana CCMP526]; EKU22163.1 hypothetical protein NGA_0187100, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 248.8 bits (634), Expect = 4.100e-62 Identity = 121/159 (76.10%), Postives = 139/159 (87.42%), Query Frame = 0
Query: 1 MTVTVKVIKDSYVRPTTASSSPSVSPSPRVELAGVDVLFQRMNLRVVYFFPSYLSAHALKSSLARVLDKFPILAGRQRKEGRKTHYIELNGKGVLVRQQLATVAGGEKGKGALLDDHFLKTHVHSFIHGKKNMGVNDERESNLIVTLTEVDYEEEERGG 160
MTV +KVIKDSYVRPTT ++ + S PRVELAGVDVLF RMNLRVVYFFP+ LS H L+SSL++VLDK+PIL GRQRKEG+KTHYIELNGKGVLVRQQLATV GG+KGKGALLDD F+KTH+HSF+HG K+ VN +RESNLI+TLTEVDYE+EE G
Sbjct: 1 MTVNIKVIKDSYVRPTTPPATSAGSSPPRVELAGVDVLFNRMNLRVVYFFPAPLSPHVLRSSLSKVLDKYPILGGRQRKEGKKTHYIELNGKGVLVRQQLATVKGGDKGKGALLDDEFIKTHIHSFVHGNKSAAVNQDRESNLIITLTEVDYEQEEEAG 159
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO20G00350.2 ID=NO20G00350.2|Name=NO20G00350.2|organism=Nannochloropsis oceanica|type=mRNA|length=2831bp AAAAAATGCGAGGGAGGGGAATTCTTCCACGGGATACGACACATGTGTAC GGACATCATCCTTTTGGTCTCTTGTTGGACAACCATCCTGCGATACCCTG CTTTAATCCTCTGCTTTACCGTCGCCTATAATTATACCGTGTCTCTGCAT TCATACTCCAAGATCTCCGTGGAACTCATGGTTATGGCCCATTTTAATGC AGGTGGCCTGACGTCACAGAGAGCACCACGACGGTAGAACTCGTGGTTTA ATCGATGGCGAAAGGGGCAGAATAGTAGCACCAGTCTAAGGGATTAAGCG CCACTAGAATCAGGAGAGATAACCAACTGATGCCCTTGTGGCATGAGCTG TGGTCAAGGCCGTATGCATGTTCTTGTGCTGTAGACCTGACTGTCGTGTC GCCATGCCTATTCCAAGAGCTCTTCCCGAAATTATGTGGGTGTGCCGCCA CACTCCCCCTTGCGTTCACATCCTTTCACGCAGTACAAAAGCACAGGGTT GACAACACGCAATAGCCTCTTTCAGACCAAACGACCTGCTGTGGCCGCCA ATCATGTCAAACCGCCCCTAGCAGCTCATGCCTTTCTCACTCACATCCAA GAAAGCATACGTCTGTCCTGCACCAAGTCTGACCATCACCCCCACGCCCT CCCCTTCAACAGCACATCGGTGTGTGTATACATATAGGCATATATAAGTT TCTACAAATCCACACCAAGGCCAAGCCATGACTGTCACGGTTAAGGTGAT CAAGGACAGCTACGTCCGTCCAACCACCGCTTCCTCCTCGCCCTCGGTCT CTCCCAGCCCCCGTGTCGAGCTCGCAGGCGTGGATGTCCTCTTCCAACGA ATGAACCTCCGAGTCGTCTACTTCTTCCCTTCTTATCTCTCGGCGCACGC CCTCAAGTCTTCCCTTGCCAGGGTCTTGGACAAGTTTCCCATCCTCGCGG GGCGGCAACGAAAGGAGGGGAGGAAAACGCATTACATCGAGTTGAACGGG AAGGGGGTGTTGGTCCGACAGCAACTCGCCACGGTGGCAGGAGGAGAGAA AGGGAAGGGGGCCTTGCTGGACGATCATTTTTTGAAGACACACGTGCATT CGTTTATTCATGGGAAGAAGAATATGGGGGTGAATGACGAGAGGGAGAGC AATTTGATCGTTACCCTCACGGAGGTCGACTACGAGGAGGAGGAGCGGGG AGGAACCGGGGGAGGTGGGGGGCTATTGAACGGGCTCTTTGGTGGGTGTA TGGCCACCTCATGTTACCCGGAAGCGCCGAATGAGGAGTGGCATGATGTC AGCTTCGAGGCGGCGGGGGAGGGAGGGGGGGAAGGTGGGTGGGGGAAGCC TATCCGATATGCGGTCGGTGTGTGCATCTCCCACGACATTGCTGACGGCG GGTCTGTGGCTGCTTTTCTCTTGGCTTGGGCGATGGCCTCGATGGGGAAG CCGTTTCCGAAGGCCGTCATGGACCGAGGGCCCTTGCGCCAGATTCCTCC CGCCATCGCATCTGCCCGTCTCTCCTCCCTCCCCCTTCCCCCGGGGCTGT GCTCGATGGGCACCGTGAGTACTGCCCTTTTTATGGGCCGCTTTCTCCTT ATGGCCATGAGCAGCAAGTACGATTTTGTCAAGCTCAAATTTACGGGCAA GGAGCTGGAGAATTTGAAGGCGGCGGCGATGCTACCCCTCGTCAAGGCCA AGGCCGGGGACGACATTTGGGTCTCCACCTCCAACGCCCTGGCCGCCCAT TTGTGGCCCATCCTCTCCCCTTTGATCGCCACGCCCGGCGGAGAAGGGAG GGAGGGAGGGAGGGAGGGGGGGAGGGGGGCCGACGCGGACCTCATCTCGT TGGCAGTGATTGTGAATTACCGAAAGGCCTTGGAAGGGATTGGGCCCATG TATTACGGGAATTGCGTGGGCCTGAAACGCATCCAAGTGGACGCACCCCT CCTCCCTGAACAGCCGGAGCGCTCTGTACAGCTGGAAAAAGCTCTTCCCT CCCTCACGCGCCTCGCACTCAAGATCCGCAAGGGGGTGGTGGTGAACGAG GAGGCGAAACAAGGATACCTGGATGAAGCCCACTACCTGCAAAAGGCGCT CGCTGACGGAAAGATTGGAAACATGCAGTTCGGCTTGATGGTGGACGCGG CGAAAGGCAAACCTCTTCTACTCTGGGACGACGTCTCCGGCTTCCAACCC GGTGGGATGGGCTTTGGCCTCTGCGGTGTCACTGCCACACGGGCAGATTT TTATTTCGATCCGTTCCCCGGTATCGCCCTGGTCATGCCCACGGCCCCTG GTCCTGACGGGCTGGCAGGGAAGGAGGTGTGTGTATGCATGCACAAGGCA AGCGCTGCCCGCGTCTGCTCGGACAAATTGCAGGCACGTATTCATAAGTA CGCTCCCAAGGAGGGAACAACGACGGGCGGGGCAGGGAAGGCAGTGAAGA AGGGGGAAGGAGGGGAGGAAGTCAAGGACGCGTCTTGTTAACAGGATGCG ACGGGGGCATCGGAGAGGTTGATAACGACGCATTGCATGAAGGGAATGGA GGTATAAGGCCGTAGAAAATGTTTGAAGGCGAGATCGATGGAAGCTGAAA GGGACAGGGAGTGTGCAAGGAGTATGTATACACATGCCAATGGTCAATCC GATGGCTGTGATACCAAGAGAAAATGACGAGGGCGGAAGGTGCGTAGCAT TTGCAGATGTTTGTGTGGATAAGTATATTGCATGAGTGAGAAAAATAAAG ATCAAATCATATGTTCTAAAAAGTAACTCACCACGAAAGAAGAATCGCAC AGTCGCCATCCATGCTGCTTCTAATCCAAAG back to topprotein sequence of NO20G00350.2 >NO20G00350.2-protein ID=NO20G00350.2-protein|Name=NO20G00350.2|organism=Nannochloropsis oceanica|type=polypeptide|length=588bp MTVTVKVIKDSYVRPTTASSSPSVSPSPRVELAGVDVLFQRMNLRVVYFF PSYLSAHALKSSLARVLDKFPILAGRQRKEGRKTHYIELNGKGVLVRQQL ATVAGGEKGKGALLDDHFLKTHVHSFIHGKKNMGVNDERESNLIVTLTEV DYEEEERGGTGGGGGLLNGLFGGCMATSCYPEAPNEEWHDVSFEAAGEGG GEGGWGKPIRYAVGVCISHDIADGGSVAAFLLAWAMASMGKPFPKAVMDR GPLRQIPPAIASARLSSLPLPPGLCSMGTVSTALFMGRFLLMAMSSKYDF VKLKFTGKELENLKAAAMLPLVKAKAGDDIWVSTSNALAAHLWPILSPLI ATPGGEGREGGREGGRGADADLISLAVIVNYRKALEGIGPMYYGNCVGLK RIQVDAPLLPEQPERSVQLEKALPSLTRLALKIRKGVVVNEEAKQGYLDE AHYLQKALADGKIGNMQFGLMVDAAKGKPLLLWDDVSGFQPGGMGFGLCG VTATRADFYFDPFPGIALVMPTAPGPDGLAGKEVCVCMHKASAARVCSDK LQARIHKYAPKEGTTTGGAGKAVKKGEGGEEVKDASC* back to topmRNA from alignment at chr20:116608..120901- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO20G00350.2 ID=NO20G00350.2|Name=NO20G00350.2|organism=Nannochloropsis oceanica|type=mRNA|length=4294bp|location=Sequence derived from alignment at chr20:116608..120901- (Nannochloropsis oceanica) AAAAAATGCGAGGGAGGGGAATTCTTCCACGGGATACGACACATGTGTAC
GGACATCATCCTTTTGGTCTCTTGTTGGACAACCATCCTGCGATACCCTG
CTTTAATCCTCTGCTTTACCGTCGCCTATAATTATACCGTGTCTCTGCAT
TCATACTCCAAGATCTCCGTGGAACTCATGGTTATGGCCCATTTTAATGC
AGGTGGCCTGACGTCACAGAGAGCACCACGACGGTAGAACTCGTGGTTTA
ATCGATGGCGAAAGGGGCAGAATAGTAGCACCAGTCTAAGGGATTAAGCG
CCACTAGAATCAGGAGAGATAACCAACTGATGCCCTTGTGGCATGAGCTG
TGGTCAAGGCCGTATGCATGTTCTTGTGCTGTAGACCTGACTGTCGTGTC
GCCATGCCTATTCCAAGAGCTCTTCCCGAAATTATGTGGGTGTGCCGCCA
CACTCCCCCTTGCGTTCACATCCTTTCACGCAGTACAAAAGCACAGGGTT
GACAACACGCAATAGCCTCTTTCAGACCAAACGACCTGCTGTGGCCGCCA
ATCATGTCAAACCGCCCCTAGCAGCTCATGCCTTTCTCACTCACATCCAA
GAAAGCATACGTCTGTCCTGCACCAAGTCTGACCATCACCCCCACGCCCT
CCCCTTCAACAGCACATCGGTGTGTGTATACATATAGGCATATATAAGTT
TCTACAAATCCACACCAAGGCCAAGCCATGACTGTCACGGTTAAGGTGAT
CAAGGACAGCTACGTCCGTCCAACCACCGCTTCCTCCTCGCCCTCGGTCT
CTCCCAGCCCCCGTGTCGAGCTCGCAGGCGTGGATGTCCTCTTCCAACGA
ATGAACCTCCGAGTCGTCTACTTCTTCCCTTCTTATCTCTCGGCGCACGC
CCTCAAGTCTTCCCTTGCCAGGGTCTTGGACAAGTTTCCCATCCTCGCGG
GGCGGCAACGAAAGGAGGGGAGGAAAACGCATTACATCGAGTTGAACGGG
AAGGGGGTGTTGGTCCGACAGCAACTCGCCACGGTGGCAGGAGGAGAGAA
AGGGAAGGGGGCCTTGCTGGACGATCATTTTTTGAAGACACACGTGCATT
CGTTTATTCATGGGAAGAAGAATATGGGGGTGAATGACGAGAGGGAGAGC
AATTTGATCGTTACCCTCACGGAGGTCGACTACGAGGAGGAGGAGCGGGG
AGGAACCGGGGGAGGTGGGGGGCTATTGAACGGGCTCTTTGGTGGGTGTA
TGGCCACCTCATGTTACCCGGAAGCGCCGAATGAGGAGTGGCATGATGTC
AGCTTCGAGGCGGCGGGGGAGGGAGGGGGGGAAGGTGGGTGGGGGAAGCC
TATCCGATATGCGGTCGGTGTGTGGTAAGTAGGGGTATAGAGGGGGAGGG
GGGGGGGGGATTGAAAGAGTGAAAAAGAGCAGTAGAAGGGTTTTAGGGGG
TGTGACTACTGGGGCTTTCACTTGGTCGTCTCTGCCTGGTGGTCGCCATC
CACCGTCTCTGTCTTGACGTCGGATGCCAACCTCCCTTCCTTTTGCTCCT
TCCTTTCTATCTATTTGTTCCCTTCCATCCCACCTTTCTCGCAGCATCTC
CCACGACATTGCTGACGGCGGGTCTGTGGCTGCTTTTCTCTTGGCTTGGG
CGATGGCCTCGATGGGGAAGCCGTTTCCGAAGGCCGTCATGGACCGAGGG
CCCTTGCGCCAGGTAGGGAGGGAGGGGGGGAGGGGGGGAGGGAGAGAGGG
AGGGATTGAGGGAGTGAAAAAAAGGGGGGGGGGCTACTGCCTGAAGTGCC
CCCGAGATGGATTTTGGGCAGGCCGCGCACGTTTTTGTAAACGCTTAATA
TATTATCGAGGCCCGCGCTTCCTGCGCCCTCGTGATGATTCCCCGCATGA
TTTTTAGCAGGCGGTACAATCAAGTGATTTCAAATGATTCCTTCCTTTTG
TGTCGGTCCCTCGCTATCTCTGTAGATTCCTCCCGCCATCGCATCTGCCC
GTCTCTCCTCCCTCCCCCTTCCCCCGGGGCTGTGCTCGATGGGCACCGTG
AGTACTGCCCTTTTTATGGGCCGCTTTCTCCTTATGGCCATGAGCAGCAA
GTACGATTTTGTCAAGGTAAGAGGGAGGGAGGGAGGGAGGGAGGGATACA
GGGAAGGAGAACATTCAAGAAGTCGTTGGTCTATAGGAATATATACGTGG
CCTTTCTCTCCGTTTCGTTGGTTGATACGGCTACGCAAACGTTTGCCCCC
TCCCCTCCCTCCCTCCCTCCCTCCCTCCCTTAGCTCAAATTTACGGGCAA
GGAGCTGGAGAATTTGAAGGCGGCGGCGATGCTACCCCTCGTCAAGGCCA
AGGCCGGGGACGACATTTGGTAGGTGGACCAAAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGAAGGGAAGGAGGGGTGGATTGGATATCCAAGTCATTG
CTGCTGCCCATCAACTCATGGTTGTCCGTCCGTCCTTCCCTCCCTCCCTC
CCTCCTCCAGGGTCTCCACCTCCAACGCCCTGGCCGCCCATTTGTGGCCC
ATCCTCTCCCCTTTGATCGCCACGCCCGGCGGAGAAGGGAGGGAGGGAGG
GAGGGAGGGGGGGAGGGGGGCCGACGCGGACCTCATCTCGTTGGCAGTGA
TTGTGAATTACCGAAAGGCCTTGGAAGGGATTGGGCCCATGTATTACGGT
ATGTGAGGGAGGGAGGAAGGGAGGGGGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGATCAAGTAAGAGGAGGAGAGAAGGAGAGACGGGAA
GAGAAGGAGGTTGCGCGGCGAAGTTGGTACATTTTCCCTATCGTTTCTTA
CTGTGATTAAATTAACACCTCTTCATTTGATTAAATTAACAGGGAATTGC
GTGGGCCTGAAACGCATCCAAGTGGACGCACCCCTCCTCCCTGAACAGCC
GGAGCGCTCTGTACAGCTGGAAAAAGCTCTTCCCTCCCTCACGCGCCTCG
CACTCAAGATCCGCAAGGGGGTGGTGGTGAACGAGGAGGCGAAACAAGGA
TACCTGGATGAAGCCCACTACCTGCAAAAGGCGCTCGCTGACGGAAAGAT
TGGAAACATGCAGTTCGGCTTGATGGTAAGGAAGGGGAGGGAGGAGCAGG
GGAAGGAGGGCAGGAAGCGACGCGGTAGCTCATTTTTTTTGTTTTTGTGG
CGATATGATTATGCCGTAATTCACTGGTGGACGCGGCGAAAGGCAATTTC
ATTCTCTCATTTGTGTTCGTCTCATGTGATGATGCTGTAATTCACAGGTG
GACGCGGCGAAAGGCAAACCTCTTCTACTCTGGGACGACGTCTCCGGTAG
GGGCACCATTACATCATTACATCCTGACTCCCTCGCCGCCTCCTTCCTTC
CCTTCCTTTCTTCCCTCCTCCCTTATTTTTCCTCCCTCGCTTTTTTCAAT
CCTCCCTTTCTCCCTCCTTCTTATCCTCCTTGTCATCCTCCCTCCCTCCC
TCCCTCCCTCCCTCTTTCCCTTTCCCCTCAAGGCTTCCAACCCGGTGGGA
TGGGCTTTGGCCTCTGCGGTGTCACTGCCACACGGGCAGATTTTTATTTC
GATCCGTTCCCCGGTATCGCCCTGGTCATGCCCACGGCCCCTGGTCCTGA
CGGGCTGGCAGGGAAGGAGGTGTGTGTATGCATGCACAAGGCAAGCGCTG
CCCGCGTCTGCTCGGACAAATTGCAGGTAAGGAGGGAAGGAGGGATGGAG
GGAGGGAGGGAGGGAGGGAGGGAGAGCGAGGAGGGTCGTGATAATCAAGG
TGCTGACACGTGGCGGCCATGCTTTTGTGTTAATTTTATGACACAGGCAC
GTATTCATAAGTACGCTCCCAAGGAGGGAACAACGACGGGCGGGGCAGGG
AAGGCAGTGAAGAAGGGGGAAGGAGGGGAGGAAGTCAAGGACGCGTCTTG
TTAACAGGATGCGACGGGGGCATCGGAGAGGTTGATAACGACGCATTGCA
TGAAGGGAATGGAGGTATAAGGCCGTAGAAAATGTTTGAAGGCGAGATCG
ATGGAAGCTGAAAGGGACAGGGAGTGTGCAAGGAGTATGTATACACATGC
CAATGGTCAATCCGATGGCTGTGATACCAAGAGAAAATGACGAGGGCGGA
AGGTGCGTAGCATTTGCAGATGTTTGTGTGGATAAGTATATTGCATGAGT
GAGAAAAATAAAGATCAAATCATATGTTCTAAAAAGTAACTCACCACGAA
AGAAGAATCGCACAGTCGCCATCCATGCTGCTTCTAATCCAAAG back to topCoding sequence (CDS) from alignment at chr20:116608..120901- >NO20G00350.2 ID=NO20G00350.2|Name=NO20G00350.2|organism=Nannochloropsis oceanica|type=CDS|length=1764bp|location=Sequence derived from alignment at chr20:116608..120901- (Nannochloropsis oceanica) ATGACTGTCACGGTTAAGGTGATCAAGGACAGCTACGTCCGTCCAACCAC CGCTTCCTCCTCGCCCTCGGTCTCTCCCAGCCCCCGTGTCGAGCTCGCAG GCGTGGATGTCCTCTTCCAACGAATGAACCTCCGAGTCGTCTACTTCTTC CCTTCTTATCTCTCGGCGCACGCCCTCAAGTCTTCCCTTGCCAGGGTCTT GGACAAGTTTCCCATCCTCGCGGGGCGGCAACGAAAGGAGGGGAGGAAAA CGCATTACATCGAGTTGAACGGGAAGGGGGTGTTGGTCCGACAGCAACTC GCCACGGTGGCAGGAGGAGAGAAAGGGAAGGGGGCCTTGCTGGACGATCA TTTTTTGAAGACACACGTGCATTCGTTTATTCATGGGAAGAAGAATATGG GGGTGAATGACGAGAGGGAGAGCAATTTGATCGTTACCCTCACGGAGGTC GACTACGAGGAGGAGGAGCGGGGAGGAACCGGGGGAGGTGGGGGGCTATT GAACGGGCTCTTTGGTGGGTGTATGGCCACCTCATGTTACCCGGAAGCGC CGAATGAGGAGTGGCATGATGTCAGCTTCGAGGCGGCGGGGGAGGGAGGG GGGGAAGGTGGGTGGGGGAAGCCTATCCGATATGCGGTCGGTGTGTGCAT CTCCCACGACATTGCTGACGGCGGGTCTGTGGCTGCTTTTCTCTTGGCTT GGGCGATGGCCTCGATGGGGAAGCCGTTTCCGAAGGCCGTCATGGACCGA GGGCCCTTGCGCCAGATTCCTCCCGCCATCGCATCTGCCCGTCTCTCCTC CCTCCCCCTTCCCCCGGGGCTGTGCTCGATGGGCACCGTGAGTACTGCCC TTTTTATGGGCCGCTTTCTCCTTATGGCCATGAGCAGCAAGTACGATTTT GTCAAGCTCAAATTTACGGGCAAGGAGCTGGAGAATTTGAAGGCGGCGGC GATGCTACCCCTCGTCAAGGCCAAGGCCGGGGACGACATTTGGGTCTCCA CCTCCAACGCCCTGGCCGCCCATTTGTGGCCCATCCTCTCCCCTTTGATC GCCACGCCCGGCGGAGAAGGGAGGGAGGGAGGGAGGGAGGGGGGGAGGGG GGCCGACGCGGACCTCATCTCGTTGGCAGTGATTGTGAATTACCGAAAGG CCTTGGAAGGGATTGGGCCCATGTATTACGGGAATTGCGTGGGCCTGAAA CGCATCCAAGTGGACGCACCCCTCCTCCCTGAACAGCCGGAGCGCTCTGT ACAGCTGGAAAAAGCTCTTCCCTCCCTCACGCGCCTCGCACTCAAGATCC GCAAGGGGGTGGTGGTGAACGAGGAGGCGAAACAAGGATACCTGGATGAA GCCCACTACCTGCAAAAGGCGCTCGCTGACGGAAAGATTGGAAACATGCA GTTCGGCTTGATGGTGGACGCGGCGAAAGGCAAACCTCTTCTACTCTGGG ACGACGTCTCCGGCTTCCAACCCGGTGGGATGGGCTTTGGCCTCTGCGGT GTCACTGCCACACGGGCAGATTTTTATTTCGATCCGTTCCCCGGTATCGC CCTGGTCATGCCCACGGCCCCTGGTCCTGACGGGCTGGCAGGGAAGGAGG TGTGTGTATGCATGCACAAGGCAAGCGCTGCCCGCGTCTGCTCGGACAAA TTGCAGGCACGTATTCATAAGTACGCTCCCAAGGAGGGAACAACGACGGG CGGGGCAGGGAAGGCAGTGAAGAAGGGGGAAGGAGGGGAGGAAGTCAAGG ACGCGTCTTGTTAA back to top
|