NO20G00350.1, NO20G00350.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO20G00350.1
Unique Name	NO20G00350.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2462
Alignment location	chr20:116608..120174 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr20	genome	chr20:116608..120174 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO20G00350.1 vs.
Match: XP_005854199.1 (hypothetical protein NGA_0187100, partial [Nannochloropsis gaditana CCMP526]; EKU22163.1 hypothetical protein NGA_0187100, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 248.8 bits (634), Expect = 3.700e-62
Identity = 121/159 (76.10%), Postives = 139/159 (87.42%), Query Frame = 0

Query:    1 MTVTVKVIKDSYVRPTTASSSPSVSPSPRVELAGVDVLFQRMNLRVVYFFPSYLSAHALKSSLARVLDKFPILAGRQRKEGRKTHYIELNGKGVLVRQQLATVAGGEKGKGALLDDHFLKTHVHSFIHGKKNMGVNDERESNLIVTLTEVDYEEEERGG 160
            MTV +KVIKDSYVRPTT  ++ + S  PRVELAGVDVLF RMNLRVVYFFP+ LS H L+SSL++VLDK+PIL GRQRKEG+KTHYIELNGKGVLVRQQLATV GG+KGKGALLDD F+KTH+HSF+HG K+  VN +RESNLI+TLTEVDYE+EE  G
Sbjct:    1 MTVNIKVIKDSYVRPTTPPATSAGSSPPRVELAGVDVLFNRMNLRVVYFFPAPLSPHVLRSSLSKVLDKYPILGGRQRKEGKKTHYIELNGKGVLVRQQLATVKGGDKGKGALLDDEFIKTHIHSFVHGNKSAAVNQDRESNLIITLTEVDYEQEEEAG 159

The following BLAST results are available for this feature:

BLAST of NO20G00350.1 vs.

BLAST of NO20G00350.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_005854199.1	3.700e-62	76.10	hypothetical protein NGA_0187100, partial [Nannoch...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO20G00350	NO20G00350	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO20G00350.1	NO20G00350.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO20G00350.1.cds1	NO20G00350.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G00350.1.cds2	NO20G00350.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G00350.1.cds3	NO20G00350.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G00350.1.cds4	NO20G00350.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G00350.1.cds5	NO20G00350.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G00350.1.cds6	NO20G00350.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr20:116608..120174-
coding sequence from alignment at chr20:116608..120174-

mRNA sequence

>NO20G00350.1 ID=NO20G00350.1|Name=NO20G00350.1|organism=Nannochloropsis oceanica|type=mRNA|length=2462bp
ATGACTGTCACGGTTAAGGTGATCAAGGACAGCTACGTCCGTCCAACCAC
CGCTTCCTCCTCGCCCTCGGTCTCTCCCAGCCCCCGTGTCGAGCTCGCAG
GCGTGGATGTCCTCTTCCAACGAATGAACCTCCGAGTCGTCTACTTCTTC
CCTTCTTATCTCTCGGCGCACGCCCTCAAGTCTTCCCTTGCCAGGGTCTT
GGACAAGTTTCCCATCCTCGCGGGGCGGCAACGAAAGGAGGGGAGGAAAA
CGCATTACATCGAGTTGAACGGGAAGGGGGTGTTGGTCCGACAGCAACTC
GCCACGGTGGCAGGAGGAGAGAAAGGGAAGGGGGCCTTGCTGGACGATCA
TTTTTTGAAGACACACGTGCATTCGTTTATTCATGGGAAGAAGAATATGG
GGGTGAATGACGAGAGGGAGAGCAATTTGATCGTTACCCTCACGGAGGTC
GACTACGAGGAGGAGGAGCGGGGAGGAACCGGGGGAGGTGGGGGGCTATT
GAACGGGCTCTTTGGTGGGTGTATGGCCACCTCATGTTACCCGGAAGCGC
CGAATGAGGAGTGGCATGATGTCAGCTTCGAGGCGGCGGGGGAGGGAGGG
GGGGAAGGTGGGTGGGGGAAGCCTATCCGATATGCGGTCGGTGTGTGCAT
CTCCCACGACATTGCTGACGGCGGGTCTGTGGCTGCTTTTCTCTTGGCTT
GGGCGATGGCCTCGATGGGGAAGCCGTTTCCGAAGGCCGTCATGGACCGA
GGGCCCTTGCGCCAGATTCCTCCCGCCATCGCATCTGCCCGTCTCTCCTC
CCTCCCCCTTCCCCCGGGGCTGTGCTCGATGGGCACCGTGAGTACTGCCC
TTTTTATGGGCCGCTTTCTCCTTATGGCCATGAGCAGCAAGTACGATTTT
GTCAAGCTCAAATTTACGGGCAAGGAGCTGGAGAATTTGAAGGCGGCGGC
GATGCTACCCCTCGTCAAGGCCAAGGCCGGGGACGACATTTGGGTCTCCA
CCTCCAACGCCCTGGCCGCCCATTTGTGGCCCATCCTCTCCCCTTTGATC
GCCACGCCCGGCGGAGAAGGGAGGGAGGGAGGGAGGGAGGGGGGGAGGGG
GGCCGACGCGGACCTCATCTCGTTGGCAGTGATTGTGAATTACCGAAAGG
CCTTGGAAGGGATTGGGCCCATGTATTACGGGAATTGCGTGGGCCTGAAA
CGCATCCAAGTGGACGCACCCCTCCTCCCTGAACAGCCGGAGCGCTCTGT
ACAGCTGGAAAAAGCTCTTCCCTCCCTCACGCGCCTCGCACTCAAGATCC
GCAAGGGGGTGGTGGTGAACGAGGAGGCGAAACAAGGATACCTGGATGAA
GCCCACTACCTGCAAAAGGCGCTCGCTGACGGAAAGATTGGAAACATGCA
GTTCGGCTTGATGGTAAGGAAGGGGAGGGAGGAGCAGGGGAAGGAGGGCA
GGAAGCGACGCGGTAGCTCATTTTTTTTGTTTTTGTGGCGATATGATTAT
GCCGTAATTCACTGGTGGACGCGGCGAAAGGCAATTTCATTCTCTCATTT
GTGTTCGTCTCATGTGATGATGCTGTAATTCACAGGTGGACGCGGCGAAA
GGCAAACCTCTTCTACTCTGGGACGACGTCTCCGGTAGGGGCACCATTAC
ATCATTACATCCTGACTCCCTCGCCGCCTCCTTCCTTCCCTTCCTTTCTT
CCCTCCTCCCTTATTTTTCCTCCCTCGCTTTTTTCAATCCTCCCTTTCTC
CCTCCTTCTTATCCTCCTTGTCATCCTCCCTCCCTCCCTCCCTCCCTCCC
TCTTTCCCTTTCCCCTCAAGGCTTCCAACCCGGTGGGATGGGCTTTGGCC
TCTGCGGTGTCACTGCCACACGGGCAGATTTTTATTTCGATCCGTTCCCC
GGTATCGCCCTGGTCATGCCCACGGCCCCTGGTCCTGACGGGCTGGCAGG
GAAGGAGGTGTGTGTATGCATGCACAAGGCAAGCGCTGCCCGCGTCTGCT
CGGACAAATTGCAGGCACGTATTCATAAGTACGCTCCCAAGGAGGGAACA
ACGACGGGCGGGGCAGGGAAGGCAGTGAAGAAGGGGGAAGGAGGGGAGGA
AGTCAAGGACGCGTCTTGTTAACAGGATGCGACGGGGGCATCGGAGAGGT
TGATAACGACGCATTGCATGAAGGGAATGGAGGTATAAGGCCGTAGAAAA
TGTTTGAAGGCGAGATCGATGGAAGCTGAAAGGGACAGGGAGTGTGCAAG
GAGTATGTATACACATGCCAATGGTCAATCCGATGGCTGTGATACCAAGA
GAAAATGACGAGGGCGGAAGGTGCGTAGCATTTGCAGATGTTTGTGTGGA
TAAGTATATTGCATGAGTGAGAAAAATAAAGATCAAATCATATGTTCTAA
AAAGTAACTCACCACGAAAGAAGAATCGCACAGTCGCCATCCATGCTGCT
TCTAATCCAAAG

protein sequence of NO20G00350.1

>NO20G00350.1-protein ID=NO20G00350.1-protein|Name=NO20G00350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=526bp
MTVTVKVIKDSYVRPTTASSSPSVSPSPRVELAGVDVLFQRMNLRVVYFF
PSYLSAHALKSSLARVLDKFPILAGRQRKEGRKTHYIELNGKGVLVRQQL
ATVAGGEKGKGALLDDHFLKTHVHSFIHGKKNMGVNDERESNLIVTLTEV
DYEEEERGGTGGGGGLLNGLFGGCMATSCYPEAPNEEWHDVSFEAAGEGG
GEGGWGKPIRYAVGVCISHDIADGGSVAAFLLAWAMASMGKPFPKAVMDR
GPLRQIPPAIASARLSSLPLPPGLCSMGTVSTALFMGRFLLMAMSSKYDF
VKLKFTGKELENLKAAAMLPLVKAKAGDDIWVSTSNALAAHLWPILSPLI
ATPGGEGREGGREGGRGADADLISLAVIVNYRKALEGIGPMYYGNCVGLK
RIQVDAPLLPEQPERSVQLEKALPSLTRLALKIRKGVVVNEEAKQGYLDE
AHYLQKALADGKIGNMQFGLMVRKGREEQGKEGRKRRGSSFFLFLWRYDY
AVIHWWTRRKAISFSHLCSSHVMML*

mRNA from alignment at chr20:116608..120174-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO20G00350.1 ID=NO20G00350.1|Name=NO20G00350.1|organism=Nannochloropsis oceanica|type=mRNA|length=3567bp|location=Sequence derived from alignment at chr20:116608..120174- (Nannochloropsis oceanica)
ATGACTGTCACGGTTAAGGTGATCAAGGACAGCTACGTCCGTCCAACCAC
CGCTTCCTCCTCGCCCTCGGTCTCTCCCAGCCCCCGTGTCGAGCTCGCAG
GCGTGGATGTCCTCTTCCAACGAATGAACCTCCGAGTCGTCTACTTCTTC
CCTTCTTATCTCTCGGCGCACGCCCTCAAGTCTTCCCTTGCCAGGGTCTT
GGACAAGTTTCCCATCCTCGCGGGGCGGCAACGAAAGGAGGGGAGGAAAA
CGCATTACATCGAGTTGAACGGGAAGGGGGTGTTGGTCCGACAGCAACTC
GCCACGGTGGCAGGAGGAGAGAAAGGGAAGGGGGCCTTGCTGGACGATCA
TTTTTTGAAGACACACGTGCATTCGTTTATTCATGGGAAGAAGAATATGG
GGGTGAATGACGAGAGGGAGAGCAATTTGATCGTTACCCTCACGGAGGTC
GACTACGAGGAGGAGGAGCGGGGAGGAACCGGGGGAGGTGGGGGGCTATT
GAACGGGCTCTTTGGTGGGTGTATGGCCACCTCATGTTACCCGGAAGCGC
CGAATGAGGAGTGGCATGATGTCAGCTTCGAGGCGGCGGGGGAGGGAGGG
GGGGAAGGTGGGTGGGGGAAGCCTATCCGATATGCGGTCGGTGTGTGGTA
AGTAGGGGTATAGAGGGGGAGGGGGGGGGGGGATTGAAAGAGTGAAAAAG
AGCAGTAGAAGGGTTTTAGGGGGTGTGACTACTGGGGCTTTCACTTGGTC
GTCTCTGCCTGGTGGTCGCCATCCACCGTCTCTGTCTTGACGTCGGATGC
CAACCTCCCTTCCTTTTGCTCCTTCCTTTCTATCTATTTGTTCCCTTCCA
TCCCACCTTTCTCGCAGCATCTCCCACGACATTGCTGACGGCGGGTCTGT
GGCTGCTTTTCTCTTGGCTTGGGCGATGGCCTCGATGGGGAAGCCGTTTC
CGAAGGCCGTCATGGACCGAGGGCCCTTGCGCCAGGTAGGGAGGGAGGGG
GGGAGGGGGGGAGGGAGAGAGGGAGGGATTGAGGGAGTGAAAAAAAGGGG
GGGGGGCTACTGCCTGAAGTGCCCCCGAGATGGATTTTGGGCAGGCCGCG
CACGTTTTTGTAAACGCTTAATATATTATCGAGGCCCGCGCTTCCTGCGC
CCTCGTGATGATTCCCCGCATGATTTTTAGCAGGCGGTACAATCAAGTGA
TTTCAAATGATTCCTTCCTTTTGTGTCGGTCCCTCGCTATCTCTGTAGAT
TCCTCCCGCCATCGCATCTGCCCGTCTCTCCTCCCTCCCCCTTCCCCCGG
GGCTGTGCTCGATGGGCACCGTGAGTACTGCCCTTTTTATGGGCCGCTTT
CTCCTTATGGCCATGAGCAGCAAGTACGATTTTGTCAAGGTAAGAGGGAG
GGAGGGAGGGAGGGAGGGATACAGGGAAGGAGAACATTCAAGAAGTCGTT
GGTCTATAGGAATATATACGTGGCCTTTCTCTCCGTTTCGTTGGTTGATA
CGGCTACGCAAACGTTTGCCCCCTCCCCTCCCTCCCTCCCTCCCTCCCTC
CCTTAGCTCAAATTTACGGGCAAGGAGCTGGAGAATTTGAAGGCGGCGGC
GATGCTACCCCTCGTCAAGGCCAAGGCCGGGGACGACATTTGGTAGGTGG
ACCAAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGGGAAGGAGGGG
TGGATTGGATATCCAAGTCATTGCTGCTGCCCATCAACTCATGGTTGTCC
GTCCGTCCTTCCCTCCCTCCCTCCCTCCTCCAGGGTCTCCACCTCCAACG
CCCTGGCCGCCCATTTGTGGCCCATCCTCTCCCCTTTGATCGCCACGCCC
GGCGGAGAAGGGAGGGAGGGAGGGAGGGAGGGGGGGAGGGGGGCCGACGC
GGACCTCATCTCGTTGGCAGTGATTGTGAATTACCGAAAGGCCTTGGAAG
GGATTGGGCCCATGTATTACGGTATGTGAGGGAGGGAGGAAGGGAGGGGG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGATCAAGTAAGAG
GAGGAGAGAAGGAGAGACGGGAAGAGAAGGAGGTTGCGCGGCGAAGTTGG
TACATTTTCCCTATCGTTTCTTACTGTGATTAAATTAACACCTCTTCATT
TGATTAAATTAACAGGGAATTGCGTGGGCCTGAAACGCATCCAAGTGGAC
GCACCCCTCCTCCCTGAACAGCCGGAGCGCTCTGTACAGCTGGAAAAAGC
TCTTCCCTCCCTCACGCGCCTCGCACTCAAGATCCGCAAGGGGGTGGTGG
TGAACGAGGAGGCGAAACAAGGATACCTGGATGAAGCCCACTACCTGCAA
AAGGCGCTCGCTGACGGAAAGATTGGAAACATGCAGTTCGGCTTGATGGT
AAGGAAGGGGAGGGAGGAGCAGGGGAAGGAGGGCAGGAAGCGACGCGGTA
GCTCATTTTTTTTGTTTTTGTGGCGATATGATTATGCCGTAATTCACTGG
TGGACGCGGCGAAAGGCAATTTCATTCTCTCATTTGTGTTCGTCTCATGT
GATGATGCTGTAATTCACAGGTGGACGCGGCGAAAGGCAAACCTCTTCTA
CTCTGGGACGACGTCTCCGGTAGGGGCACCATTACATCATTACATCCTGA
CTCCCTCGCCGCCTCCTTCCTTCCCTTCCTTTCTTCCCTCCTCCCTTATT
TTTCCTCCCTCGCTTTTTTCAATCCTCCCTTTCTCCCTCCTTCTTATCCT
CCTTGTCATCCTCCCTCCCTCCCTCCCTCCCTCCCTCTTTCCCTTTCCCC
TCAAGGCTTCCAACCCGGTGGGATGGGCTTTGGCCTCTGCGGTGTCACTG
CCACACGGGCAGATTTTTATTTCGATCCGTTCCCCGGTATCGCCCTGGTC
ATGCCCACGGCCCCTGGTCCTGACGGGCTGGCAGGGAAGGAGGTGTGTGT
ATGCATGCACAAGGCAAGCGCTGCCCGCGTCTGCTCGGACAAATTGCAGG
TAAGGAGGGAAGGAGGGATGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGC
GAGGAGGGTCGTGATAATCAAGGTGCTGACACGTGGCGGCCATGCTTTTG
TGTTAATTTTATGACACAGGCACGTATTCATAAGTACGCTCCCAAGGAGG
GAACAACGACGGGCGGGGCAGGGAAGGCAGTGAAGAAGGGGGAAGGAGGG
GAGGAAGTCAAGGACGCGTCTTGTTAACAGGATGCGACGGGGGCATCGGA
GAGGTTGATAACGACGCATTGCATGAAGGGAATGGAGGTATAAGGCCGTA
GAAAATGTTTGAAGGCGAGATCGATGGAAGCTGAAAGGGACAGGGAGTGT
GCAAGGAGTATGTATACACATGCCAATGGTCAATCCGATGGCTGTGATAC
CAAGAGAAAATGACGAGGGCGGAAGGTGCGTAGCATTTGCAGATGTTTGT
GTGGATAAGTATATTGCATGAGTGAGAAAAATAAAGATCAAATCATATGT
TCTAAAAAGTAACTCACCACGAAAGAAGAATCGCACAGTCGCCATCCATG
CTGCTTCTAATCCAAAG

Coding sequence (CDS) from alignment at chr20:116608..120174-

>NO20G00350.1 ID=NO20G00350.1|Name=NO20G00350.1|organism=Nannochloropsis oceanica|type=CDS|length=1578bp|location=Sequence derived from alignment at chr20:116608..120174- (Nannochloropsis oceanica)
ATGACTGTCACGGTTAAGGTGATCAAGGACAGCTACGTCCGTCCAACCAC
CGCTTCCTCCTCGCCCTCGGTCTCTCCCAGCCCCCGTGTCGAGCTCGCAG
GCGTGGATGTCCTCTTCCAACGAATGAACCTCCGAGTCGTCTACTTCTTC
CCTTCTTATCTCTCGGCGCACGCCCTCAAGTCTTCCCTTGCCAGGGTCTT
GGACAAGTTTCCCATCCTCGCGGGGCGGCAACGAAAGGAGGGGAGGAAAA
CGCATTACATCGAGTTGAACGGGAAGGGGGTGTTGGTCCGACAGCAACTC
GCCACGGTGGCAGGAGGAGAGAAAGGGAAGGGGGCCTTGCTGGACGATCA
TTTTTTGAAGACACACGTGCATTCGTTTATTCATGGGAAGAAGAATATGG
GGGTGAATGACGAGAGGGAGAGCAATTTGATCGTTACCCTCACGGAGGTC
GACTACGAGGAGGAGGAGCGGGGAGGAACCGGGGGAGGTGGGGGGCTATT
GAACGGGCTCTTTGGTGGGTGTATGGCCACCTCATGTTACCCGGAAGCGC
CGAATGAGGAGTGGCATGATGTCAGCTTCGAGGCGGCGGGGGAGGGAGGG
GGGGAAGGTGGGTGGGGGAAGCCTATCCGATATGCGGTCGGTGTGTGCAT
CTCCCACGACATTGCTGACGGCGGGTCTGTGGCTGCTTTTCTCTTGGCTT
GGGCGATGGCCTCGATGGGGAAGCCGTTTCCGAAGGCCGTCATGGACCGA
GGGCCCTTGCGCCAGATTCCTCCCGCCATCGCATCTGCCCGTCTCTCCTC
CCTCCCCCTTCCCCCGGGGCTGTGCTCGATGGGCACCGTGAGTACTGCCC
TTTTTATGGGCCGCTTTCTCCTTATGGCCATGAGCAGCAAGTACGATTTT
GTCAAGCTCAAATTTACGGGCAAGGAGCTGGAGAATTTGAAGGCGGCGGC
GATGCTACCCCTCGTCAAGGCCAAGGCCGGGGACGACATTTGGGTCTCCA
CCTCCAACGCCCTGGCCGCCCATTTGTGGCCCATCCTCTCCCCTTTGATC
GCCACGCCCGGCGGAGAAGGGAGGGAGGGAGGGAGGGAGGGGGGGAGGGG
GGCCGACGCGGACCTCATCTCGTTGGCAGTGATTGTGAATTACCGAAAGG
CCTTGGAAGGGATTGGGCCCATGTATTACGGGAATTGCGTGGGCCTGAAA
CGCATCCAAGTGGACGCACCCCTCCTCCCTGAACAGCCGGAGCGCTCTGT
ACAGCTGGAAAAAGCTCTTCCCTCCCTCACGCGCCTCGCACTCAAGATCC
GCAAGGGGGTGGTGGTGAACGAGGAGGCGAAACAAGGATACCTGGATGAA
GCCCACTACCTGCAAAAGGCGCTCGCTGACGGAAAGATTGGAAACATGCA
GTTCGGCTTGATGGTAAGGAAGGGGAGGGAGGAGCAGGGGAAGGAGGGCA
GGAAGCGACGCGGTAGCTCATTTTTTTTGTTTTTGTGGCGATATGATTAT
GCCGTAATTCACTGGTGGACGCGGCGAAAGGCAATTTCATTCTCTCATTT
GTGTTCGTCTCATGTGATGATGCTGTAA

Synonyms

Publications