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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr18 | genome | chr18:656875..659674 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO18G02070.1 vs.
Match: EWM23412.1 (signal peptide peptidase- aspartyl protease family [Nannochloropsis gaditana]) HSP 1 Score: 869.4 bits (2245), Expect = 8.400e-249 Identity = 463/726 (63.77%), Postives = 541/726 (74.52%), Query Frame = 0
Query: 10 AGGSGRSMRGLIPILQALLVLTQSLRVAGVLPTGMIEFKSTKGYTYCAGGDFGPFLPSKKHAPELILTEPAEATDQMGCTTPLVLPP-LPANQPFAVLLARGKCSFESKTVAAEAAGASLVIIYNNEEGLYYNKTAGTPQLDYECSNGNAFLPTVAEPLWSPLNNPTSCATDPRCASGRCVVTNHTDAAMGGTEVCCAWDVYMTMGPDPTIENGTASSLPSSPSIPAVYVTMRDADVLKTEMHAATVAASFSSAFSSTTSPTLPLKQQVLGAGGREGVLGMFRIAVYERPRPPYNLSSILIWLLGCATVTFAAWNSSRVKTGGRK--GGVRREVVLMEGGARREEEAYDEDDEDEIPAIELSIGHTIGFIVMASCFLILLFYVDLNRVISGLYALSAGSAVATIAAHPLLKKLLPRRIARALVVNYGRWDIRINVLDFLSTGLGLGMGVWWFVVRDTANYAWVLQDIMGVCLCVLFLTLVRFPNIKVATVLLVLAFLYDIFFVFLSPVFFHESVMIKVATGGAPKADETYCEKYPLDKKCHVRDTLPMLLVLPRINDYATGFTMLGLGDIILPGLLVAFAARYDRAMGKKHLLAFHKCCSERSYFRMMVVGYAVGLMMANVAVYAMNMGQPALLYLVPCTLGVFALVSYREGTLRQMWQGPPALQPPGLPQHQEG----GEEAPPAGAE---------GTVVMATPVEGSVRAGSEGLAVAGNGSG 720
AGG SM GL+P+L L + VAGV PTGM+EFKSTKGYTYCA DFGP LPS+K+APEL+L EPA+ + GC PLVLPP LP PFA+ LARG CSFESK AA+A GASL++IYN EE LY NKTA TPQLDYEC NG AFL VA+PLWSPLN+ +CA DPRCAS RC+VTN TD G TEVCCAWD+YMTMGPDP IE A+ P+IP V+VTMRDA+ + HAA ++++ +S + SP + +Q G G R++VYER RP YNL+SIL+WLLGC TVT+AAWN+SRV + K RE LM GG EE D+E+E P IELS+GHT+GFIVMAS FLILLFYV+LNRV+S LYALSAGSAVATI AHP +++LPR +AR + Y RWDI+I VL+FLSTGLG+G+G+WWFVVR +A YAW+LQ+IMGV LC+LFL+LVRFPNIKVAT+LL LAFLYDIFFVFLSP+FF ESVMIKVATGGAP+ADET+CEKYP D+KC VRD LPMLLVLPRINDYA GFTMLGLGDIILPGLLVAFAARYDRAMG + L AFHKC E YFR+MV+GYA+GL+MANVAVY M MGQPALLYLVP TLG+F ++++GTL +MW+GPPALQPP LP HQ G GE P +E G A PVEG VR G A G+G
Sbjct: 10 AGGDRSSMGGLVPLLFLASFLAHPIEVAGVFPTGMLEFKSTKGYTYCAAADFGPALPSQKNAPELLLVEPADPDKRNGCKLPLVLPPTLPLGIPFALFLARGTCSFESKAAAAQAVGASLLVIYNTEESLYANKTAATPQLDYECGNGQAFLSHVADPLWSPLNDVPACAQDPRCASRRCLVTNTTDPTTGNTEVCCAWDLYMTMGPDPAIETSLAT-----PTIPTVFVTMRDAEAI----HAAMLSSASNSG--ALVSPLVASAKQQQGMG--------LRVSVYERYRPDYNLASILLWLLGCFTVTYAAWNASRVGSWREKDRASAGREAGLMNGGDEGGEEG---DEEEETPVIELSVGHTVGFIVMASSFLILLFYVNLNRVVSVLYALSAGSAVATIVAHPFFRRVLPRHLARTSIFQYRRWDIKITVLEFLSTGLGIGLGIWWFVVRASAGYAWILQNIMGVSLCILFLSLVRFPNIKVATILLSLAFLYDIFFVFLSPIFFQESVMIKVATGGAPRADETFCEKYPEDEKCRVRDMLPMLLVLPRINDYAGGFTMLGLGDIILPGLLVAFAARYDRAMGVE-LFAFHKCGREGRYFRLMVIGYALGLLMANVAVYVMKMGQPALLYLVPATLGLFVSRAFKDGTLGEMWRGPPALQPPRLPHHQGGENREGERLTPGTSEELGFDGIGAGAGAFAMPVEGHVRPGVSVGETAETGAG 712
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO18G02070.1 ID=NO18G02070.1|Name=NO18G02070.1|organism=Nannochloropsis oceanica|type=mRNA|length=2301bp ATGTGGGTGTCCGCTGCGTCGCCCTCTGCTGGAGGCAGTGGCAGAAGCAT GCGCGGCCTCATCCCCATACTCCAAGCACTCCTTGTCCTTACCCAGTCAT TGAGAGTGGCAGGCGTCTTGCCCACGGGAATGATTGAGTTCAAGAGCACC AAGGGCTACACCTATTGCGCGGGAGGGGACTTCGGCCCCTTCCTCCCCTC CAAAAAGCACGCCCCTGAGCTCATCCTCACCGAGCCCGCCGAAGCTACTG ATCAGATGGGCTGCACCACGCCCCTCGTCCTCCCTCCCCTCCCTGCCAAC CAGCCCTTCGCCGTCCTCCTCGCCCGGGGCAAATGCTCCTTCGAGTCCAA AACCGTCGCGGCGGAAGCTGCCGGGGCTTCCCTGGTTATCATCTACAACA ACGAAGAAGGGCTTTACTACAACAAAACTGCCGGCACGCCACAATTGGAT TATGAGTGCAGTAACGGGAATGCTTTTCTCCCCACCGTTGCGGAACCTCT CTGGTCGCCTCTCAACAACCCCACTTCCTGCGCGACGGACCCGCGCTGTG CCTCTGGCCGGTGTGTTGTGACGAATCATACTGATGCCGCAATGGGCGGC ACGGAAGTGTGTTGCGCCTGGGATGTGTATATGACCATGGGGCCCGACCC GACAATTGAGAATGGTACAGCTTCTTCTCTCCCTTCCTCGCCGTCGATCC CTGCCGTGTATGTCACCATGCGGGACGCCGATGTCCTGAAGACAGAGATG CATGCTGCAACTGTTGCAGCCTCCTTTTCCTCTGCTTTTTCTTCCACCAC CTCCCCCACGCTGCCTCTAAAGCAGCAGGTCTTGGGGGCAGGAGGGAGGG AAGGAGTGTTGGGTATGTTCCGGATTGCGGTATATGAGCGCCCACGGCCC CCTTATAACCTTTCCTCTATCTTGATTTGGCTTTTGGGTTGTGCTACTGT TACCTTCGCGGCCTGGAACTCCTCTAGGGTGAAGACGGGAGGGAGGAAAG GGGGAGTAAGGAGGGAGGTGGTGTTGATGGAGGGAGGGGCGCGACGGGAG GAAGAGGCTTACGACGAGGATGATGAGGACGAGATACCGGCCATTGAGTT GTCGATCGGGCATACGATAGGGTTCATAGTAATGGCGTCTTGTTTCTTAA TTCTTCTCTTTTACGTAGATCTTAACCGTGTGATTTCTGGACTCTACGCC CTCTCGGCGGGCTCGGCCGTTGCCACCATTGCGGCGCACCCTTTACTGAA GAAACTGTTACCTCGGAGGATCGCCAGAGCGCTGGTCGTGAATTATGGGC GGTGGGATATACGCATCAATGTGCTTGACTTCTTGTCGACGGGCTTGGGG CTGGGGATGGGGGTGTGGTGGTTTGTAGTGAGGGACACGGCGAACTACGC GTGGGTGCTGCAAGACATCATGGGTGTGTGTCTATGTGTCCTTTTTTTAA CGCTGGTCCGCTTTCCTAATATCAAGGTCGCGACAGTTTTGTTGGTGCTG GCATTTCTGTACGACATCTTTTTCGTGTTTTTGAGCCCGGTGTTTTTCCA TGAGAGTGTGATGATTAAGGTAGCTACTGGCGGTGCCCCAAAGGCGGACG AGACTTATTGTGAAAAATATCCTCTCGACAAGAAGTGTCACGTCCGTGAC ACCCTGCCCATGCTCTTGGTCCTACCGCGGATTAATGATTATGCGACCGG CTTCACTATGCTGGGCCTGGGCGATATCATCCTCCCGGGCCTGTTGGTGG CGTTTGCCGCCCGATATGACAGGGCAATGGGCAAGAAACACCTTCTCGCT TTCCACAAATGCTGCTCCGAACGTAGTTATTTCCGGATGATGGTTGTGGG ATACGCCGTCGGGTTGATGATGGCAAATGTGGCTGTCTACGCCATGAATA TGGGACAACCCGCCCTCCTTTACCTTGTTCCCTGCACTCTGGGGGTCTTT GCCCTGGTCTCCTACCGTGAAGGGACCCTCCGTCAGATGTGGCAAGGTCC ACCTGCGCTTCAGCCGCCCGGACTGCCGCAACACCAGGAGGGAGGGGAGG AAGCGCCTCCGGCAGGAGCGGAAGGGACTGTGGTCATGGCGACGCCTGTT GAGGGAAGTGTACGAGCGGGAAGCGAGGGTTTGGCGGTAGCTGGGAATGG GAGCGGAATGACAGTTCAAGGGGAGAATGGTAGCAGCAACAGCAACAATA GCAGCACCGTCACCGGCAATAGCAACAGTAATACCAACACCAACACTGCA GGGGCTGCGCCTTCCGTGACTGAGGAGGACGCCCCACTTTTGGACATCTA A back to topprotein sequence of NO18G02070.1 >NO18G02070.1-protein ID=NO18G02070.1-protein|Name=NO18G02070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=767bp MWVSAASPSAGGSGRSMRGLIPILQALLVLTQSLRVAGVLPTGMIEFKST KGYTYCAGGDFGPFLPSKKHAPELILTEPAEATDQMGCTTPLVLPPLPAN QPFAVLLARGKCSFESKTVAAEAAGASLVIIYNNEEGLYYNKTAGTPQLD YECSNGNAFLPTVAEPLWSPLNNPTSCATDPRCASGRCVVTNHTDAAMGG TEVCCAWDVYMTMGPDPTIENGTASSLPSSPSIPAVYVTMRDADVLKTEM HAATVAASFSSAFSSTTSPTLPLKQQVLGAGGREGVLGMFRIAVYERPRP PYNLSSILIWLLGCATVTFAAWNSSRVKTGGRKGGVRREVVLMEGGARRE EEAYDEDDEDEIPAIELSIGHTIGFIVMASCFLILLFYVDLNRVISGLYA LSAGSAVATIAAHPLLKKLLPRRIARALVVNYGRWDIRINVLDFLSTGLG LGMGVWWFVVRDTANYAWVLQDIMGVCLCVLFLTLVRFPNIKVATVLLVL AFLYDIFFVFLSPVFFHESVMIKVATGGAPKADETYCEKYPLDKKCHVRD TLPMLLVLPRINDYATGFTMLGLGDIILPGLLVAFAARYDRAMGKKHLLA FHKCCSERSYFRMMVVGYAVGLMMANVAVYAMNMGQPALLYLVPCTLGVF ALVSYREGTLRQMWQGPPALQPPGLPQHQEGGEEAPPAGAEGTVVMATPV EGSVRAGSEGLAVAGNGSGMTVQGENGSSNSNNSSTVTGNSNSNTNTNTA GAAPSVTEEDAPLLDI* back to topmRNA from alignment at chr18:656875..659674- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO18G02070.1 ID=NO18G02070.1|Name=NO18G02070.1|organism=Nannochloropsis oceanica|type=mRNA|length=2800bp|location=Sequence derived from alignment at chr18:656875..659674- (Nannochloropsis oceanica) ATGTGGGTGTCCGCTGCGTCGCCCTCTGCTGGAGGCAGTGGCAGAAGCAT
GCGCGGCCTCATCCCCATACTCCAAGCACTCCTTGTCCTTACCCAGTCAT
TGAGAGTGGCAGGCGTCTTGCCCACGGGAATGATTGAGTTCAAGAGCACC
AAGGGCTACACCTATTGCGCGGGAGGGGTAAGTTGTTTTGTGGGGCGGGT
GTTTGGTTTTTTTGTGCTTGGATTAAGAAGAATGACGCAAACTGGAGAGT
CGGGACACGGCACTACCACTTCCCCTGCGCTCCTCCCCTACCCTCCCTGT
ATTGTGCGCGTTATATGAATGGTTCTGTGCTACGTTGTGGCTCAATGTGA
ATGATAGGAGAAGTGGGTGCTCGTGCCAGGGATGTACATATACGGCTTGA
CAGTTTTGCTTTTATCCACCCTCCGACTGACTCAACCTCCTTTCCCCTAA
CACAACATCAACAGGACTTCGGCCCCTTCCTCCCCTCCAAAAAGCACGCC
CCTGAGCTCATCCTCACCGAGCCCGCCGAAGCTACTGATCAGATGGGCTG
CACCACGCCCCTCGTCCTCCCTCCCCTCCCTGCCAACCAGCCCTTCGCCG
TCCTCCTCGCCCGGGGCAAATGCTCCTTCGAGTCCAAAACCGTCGCGGCG
GAAGCTGCCGGGGCTTCCCTGGTTATCATCTACAACAACGAAGAAGGGCT
TTACTACAACAAAACTGCCGGCACGCCACAATTGGATTATGAGTGCAGTA
ACGGGAATGCTTTTCTCCCCACCGTTGCGGAACCTCTCTGGTCGCCTCTC
AACAACCCCACTTCCTGCGCGACGGACCCGCGCTGTGCCTCTGGCCGGTG
TGTTGTGACGAATCATACTGATGCCGCAATGGGCGGCACGGAAGTGTGTT
GCGCCTGGGATGTGTATATGACCATGGGGCCCGACCCGACAATTGAGAAT
GGTACAGCTTCTTCTCTCCCTTCCTCGCCGTCGATCCCTGCCGTGTATGT
CACCATGCGGGACGCCGATGTCCTGAAGACAGAGATGCATGCTGCAACTG
TTGCAGCCTCCTTTTCCTCTGCTTTTTCTTCCACCACCTCCCCCACGCTG
CCTCTAAAGCAGCAGGTCTTGGGGGCAGGAGGGAGGGAAGGAGTGTTGGG
TATGTTCCGGATTGCGGTATATGAGCGCCCACGGCCCCCTTATAACCTTT
CCTCTATCTTGATTTGGCTTTTGGGTTGTGCTACTGTTACCTTCGCGGCC
TGGAACTCCTCTAGGGTGAAGACGGGAGGGAGGAAAGGGGGAGTAAGGAG
GGAGGTGGTGTTGATGGAGGGAGGGGCGCGACGGGAGGAAGAGGCTTACG
ACGAGGATGATGAGGACGAGATACCGGCCATTGAGTTGTCGATCGGGCAT
ACGATAGGGTTCATAGTAATGGCGTCTTGTTTCTTAATTCTTCTCTTTTA
CGTAGATCTTAACCGTGTGATTTCTGGACTCTACGCCCTCTCGGCGGGCT
CGGCCGTTGCCACCATTGCGGCGCACCCTTTACTGAAGAAACTGTTACCT
CGGAGGATCGCCAGAGCGCTGGTCGTGAATTATGGGCGGTGGGATATACG
CATCAATGTGCTTGACTTCTTGTCGACGGGCTTGGGGCTGGGGATGGGGG
TGTGGTGGTTTGTAGTGAGGGACACGGCGAACTACGCGTGGGTGCTGCAA
GACATCATGGGTGTGTGTCTATGTGTCCTTTTTTTAACGCTGGTCCGCTT
TCCTAATATCAAGGTCGCGACAGTTTTGTTGGTGCTGGCATTTCTGTACG
ACATCTTTTTCGTGTTTTTGAGCCCGGTGTTTTTCCATGAGAGTGTGATG
ATTAAGGTACCTGGAAGGGAGGCAGGGAGGGAGGCAGGGAGGGAGTGACA
GAGGGTTTGTGTGTTGAAAATGATTAGAATTCTATTATTCTGCTTCTTAC
CCCCCTGAAGGACAACGATGCTACATCGAGAAGAAGCCACCAAGCTGAAA
CGCCCATCCTCTCTCCCTCCCTCCCACTCCCCCCCTCTTTCGCTCCTCCC
CTCCTTTCCCTCCCGTAGGTAGCTACTGGCGGTGCCCCAAAGGCGGACGA
GACTTATTGTGAAAAATATCCTCTCGACAAGAAGTGTCACGTCCGTGACA
CCCTGCCCATGCTCTTGGTCCTACCGCGGATTAATGATTATGCGACCGGC
TTCACTATGCTGGGCCTGGGCGATATCATCCTCCCGGGCCTGTTGGTGGC
GTTTGCCGCCCGATATGACAGGGCAATGGGCAAGAAACACCTTCTCGCTT
TCCACAAATGCTGCTCCGAACGTAGTTATTTCCGGATGATGGTTGTGGGA
TACGCCGTCGGGTTGATGATGGCAAATGTGGCTGTCTACGCCATGAATAT
GGGACAACCCGCCCTCCTTTACCTTGTTCCCTGCACTCTGGGGGTCTTTG
CCCTGGTCTCCTACCGTGAAGGGACCCTCCGTCAGATGTGGCAAGGTCCA
CCTGCGCTTCAGCCGCCCGGACTGCCGCAACACCAGGAGGGAGGGGAGGA
AGCGCCTCCGGCAGGAGCGGAAGGGACTGTGGTCATGGCGACGCCTGTTG
AGGGAAGTGTACGAGCGGGAAGCGAGGGTTTGGCGGTAGCTGGGAATGGG
AGCGGAATGACAGTTCAAGGGGAGAATGGTAGCAGCAACAGCAACAATAG
CAGCACCGTCACCGGCAATAGCAACAGTAATACCAACACCAACACTGCAG
GGGCTGCGCCTTCCGTGACTGAGGAGGACGCCCCACTTTTGGACATCTAA
back to topCoding sequence (CDS) from alignment at chr18:656875..659674- >NO18G02070.1 ID=NO18G02070.1|Name=NO18G02070.1|organism=Nannochloropsis oceanica|type=CDS|length=2301bp|location=Sequence derived from alignment at chr18:656875..659674- (Nannochloropsis oceanica) ATGTGGGTGTCCGCTGCGTCGCCCTCTGCTGGAGGCAGTGGCAGAAGCAT GCGCGGCCTCATCCCCATACTCCAAGCACTCCTTGTCCTTACCCAGTCAT TGAGAGTGGCAGGCGTCTTGCCCACGGGAATGATTGAGTTCAAGAGCACC AAGGGCTACACCTATTGCGCGGGAGGGGACTTCGGCCCCTTCCTCCCCTC CAAAAAGCACGCCCCTGAGCTCATCCTCACCGAGCCCGCCGAAGCTACTG ATCAGATGGGCTGCACCACGCCCCTCGTCCTCCCTCCCCTCCCTGCCAAC CAGCCCTTCGCCGTCCTCCTCGCCCGGGGCAAATGCTCCTTCGAGTCCAA AACCGTCGCGGCGGAAGCTGCCGGGGCTTCCCTGGTTATCATCTACAACA ACGAAGAAGGGCTTTACTACAACAAAACTGCCGGCACGCCACAATTGGAT TATGAGTGCAGTAACGGGAATGCTTTTCTCCCCACCGTTGCGGAACCTCT CTGGTCGCCTCTCAACAACCCCACTTCCTGCGCGACGGACCCGCGCTGTG CCTCTGGCCGGTGTGTTGTGACGAATCATACTGATGCCGCAATGGGCGGC ACGGAAGTGTGTTGCGCCTGGGATGTGTATATGACCATGGGGCCCGACCC GACAATTGAGAATGGTACAGCTTCTTCTCTCCCTTCCTCGCCGTCGATCC CTGCCGTGTATGTCACCATGCGGGACGCCGATGTCCTGAAGACAGAGATG CATGCTGCAACTGTTGCAGCCTCCTTTTCCTCTGCTTTTTCTTCCACCAC CTCCCCCACGCTGCCTCTAAAGCAGCAGGTCTTGGGGGCAGGAGGGAGGG AAGGAGTGTTGGGTATGTTCCGGATTGCGGTATATGAGCGCCCACGGCCC CCTTATAACCTTTCCTCTATCTTGATTTGGCTTTTGGGTTGTGCTACTGT TACCTTCGCGGCCTGGAACTCCTCTAGGGTGAAGACGGGAGGGAGGAAAG GGGGAGTAAGGAGGGAGGTGGTGTTGATGGAGGGAGGGGCGCGACGGGAG GAAGAGGCTTACGACGAGGATGATGAGGACGAGATACCGGCCATTGAGTT GTCGATCGGGCATACGATAGGGTTCATAGTAATGGCGTCTTGTTTCTTAA TTCTTCTCTTTTACGTAGATCTTAACCGTGTGATTTCTGGACTCTACGCC CTCTCGGCGGGCTCGGCCGTTGCCACCATTGCGGCGCACCCTTTACTGAA GAAACTGTTACCTCGGAGGATCGCCAGAGCGCTGGTCGTGAATTATGGGC GGTGGGATATACGCATCAATGTGCTTGACTTCTTGTCGACGGGCTTGGGG CTGGGGATGGGGGTGTGGTGGTTTGTAGTGAGGGACACGGCGAACTACGC GTGGGTGCTGCAAGACATCATGGGTGTGTGTCTATGTGTCCTTTTTTTAA CGCTGGTCCGCTTTCCTAATATCAAGGTCGCGACAGTTTTGTTGGTGCTG GCATTTCTGTACGACATCTTTTTCGTGTTTTTGAGCCCGGTGTTTTTCCA TGAGAGTGTGATGATTAAGGTAGCTACTGGCGGTGCCCCAAAGGCGGACG AGACTTATTGTGAAAAATATCCTCTCGACAAGAAGTGTCACGTCCGTGAC ACCCTGCCCATGCTCTTGGTCCTACCGCGGATTAATGATTATGCGACCGG CTTCACTATGCTGGGCCTGGGCGATATCATCCTCCCGGGCCTGTTGGTGG CGTTTGCCGCCCGATATGACAGGGCAATGGGCAAGAAACACCTTCTCGCT TTCCACAAATGCTGCTCCGAACGTAGTTATTTCCGGATGATGGTTGTGGG ATACGCCGTCGGGTTGATGATGGCAAATGTGGCTGTCTACGCCATGAATA TGGGACAACCCGCCCTCCTTTACCTTGTTCCCTGCACTCTGGGGGTCTTT GCCCTGGTCTCCTACCGTGAAGGGACCCTCCGTCAGATGTGGCAAGGTCC ACCTGCGCTTCAGCCGCCCGGACTGCCGCAACACCAGGAGGGAGGGGAGG AAGCGCCTCCGGCAGGAGCGGAAGGGACTGTGGTCATGGCGACGCCTGTT GAGGGAAGTGTACGAGCGGGAAGCGAGGGTTTGGCGGTAGCTGGGAATGG GAGCGGAATGACAGTTCAAGGGGAGAATGGTAGCAGCAACAGCAACAATA GCAGCACCGTCACCGGCAATAGCAACAGTAATACCAACACCAACACTGCA GGGGCTGCGCCTTCCGTGACTGAGGAGGACGCCCCACTTTTGGACATCTA A back to top
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