NO17G01820.1, NO17G01820.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G01820.1
Unique NameNO17G01820.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1458
Alignment locationchr17:523796..525253 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:523796..525253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO17G01820.1 vs.
Match: ANT70527.1 (zeaxanthin epoxidase 2 [Nannochloropsis oceanica])

HSP 1 Score: 921.0 bits (2379), Expect = 1.500e-264
Identity = 456/456 (100.00%), Postives = 456/456 (100.00%), Query Frame = 0
Query:   30 VVHAFRPVSRNPKCYQQRTRAQMAITMATDNTLETEVLIVGVGPAGVSLAADLERRGIIDYLLVEKASSPREGGTAIGFWTNAWRCLESLGVAEGLRKSYLQGERVRIGTGQEGKELTSFSLEECDGGPHEFRYIMRSDLLRQLLKIVPKQRVAYNKAVVGFREDKGEGVVIAELSCGQKIRCKALVGADGVGSTVHKLLFPGQKLANYAGYQAIRGVATISKSGSLPPFFTFERGVVNQVWGAGVRLGTFRMTETSLYWFVTYNDQQREAGRDDDGAELLQKVRSLLAGWDARWGIDTILKNTPAQDVLRTSIGDRWPKPLGNWGQGRVTLLGDAAHPMTPNLGQGGAAGMEDALVLGELLVAALDKGDVGAETVPQALRAYEKERGRRITYLTLKSFIFGFLLQIPYSPVTFVRDNLALPLVFKPRSFLSHTKFEAPPLPSKVEKKKRRMFPLM 486
            VVHAFRPVSRNPKCYQQRTRAQMAITMATDNTLETEVLIVGVGPAGVSLAADLERRGIIDYLLVEKASSPREGGTAIGFWTNAWRCLESLGVAEGLRKSYLQGERVRIGTGQEGKELTSFSLEECDGGPHEFRYIMRSDLLRQLLKIVPKQRVAYNKAVVGFREDKGEGVVIAELSCGQKIRCKALVGADGVGSTVHKLLFPGQKLANYAGYQAIRGVATISKSGSLPPFFTFERGVVNQVWGAGVRLGTFRMTETSLYWFVTYNDQQREAGRDDDGAELLQKVRSLLAGWDARWGIDTILKNTPAQDVLRTSIGDRWPKPLGNWGQGRVTLLGDAAHPMTPNLGQGGAAGMEDALVLGELLVAALDKGDVGAETVPQALRAYEKERGRRITYLTLKSFIFGFLLQIPYSPVTFVRDNLALPLVFKPRSFLSHTKFEAPPLPSKVEKKKRRMFPLM
Sbjct:    3 VVHAFRPVSRNPKCYQQRTRAQMAITMATDNTLETEVLIVGVGPAGVSLAADLERRGIIDYLLVEKASSPREGGTAIGFWTNAWRCLESLGVAEGLRKSYLQGERVRIGTGQEGKELTSFSLEECDGGPHEFRYIMRSDLLRQLLKIVPKQRVAYNKAVVGFREDKGEGVVIAELSCGQKIRCKALVGADGVGSTVHKLLFPGQKLANYAGYQAIRGVATISKSGSLPPFFTFERGVVNQVWGAGVRLGTFRMTETSLYWFVTYNDQQREAGRDDDGAELLQKVRSLLAGWDARWGIDTILKNTPAQDVLRTSIGDRWPKPLGNWGQGRVTLLGDAAHPMTPNLGQGGAAGMEDALVLGELLVAALDKGDVGAETVPQALRAYEKERGRRITYLTLKSFIFGFLLQIPYSPVTFVRDNLALPLVFKPRSFLSHTKFEAPPLPSKVEKKKRRMFPLM 458          
The following BLAST results are available for this feature:
BLAST of NO17G01820.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
ANT70527.11.500e-264100.00zeaxanthin epoxidase 2 [Nannochloropsis oceanica][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G01820NO17G01820Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G01820.1NO17G01820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G01820.1.cds1NO17G01820.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G01820.1 ID=NO17G01820.1|Name=NO17G01820.1|organism=Nannochloropsis oceanica|type=mRNA|length=1458bp
ATGACGGGTAGGAGAAGTGGTGTACCGGTTTTCCTGGTATATTCATGTGC
TCCCTTGCTTCTTCTCCTCCTTCTCGCCTCATCCCCAGTCGTACACGCCT
TCCGCCCCGTCAGTCGTAATCCAAAGTGCTACCAGCAACGCACCCGTGCA
CAAATGGCCATCACGATGGCAACAGACAATACCCTGGAAACAGAAGTCTT
AATTGTTGGCGTGGGTCCTGCGGGAGTATCGCTTGCTGCGGACCTGGAGC
GTCGAGGCATCATCGATTACCTCCTGGTCGAGAAGGCAAGCTCACCGCGT
GAAGGGGGCACAGCAATAGGCTTTTGGACTAATGCCTGGCGGTGCTTGGA
GAGCTTGGGGGTGGCGGAGGGATTGCGAAAATCTTATTTACAAGGCGAAC
GCGTGCGTATTGGAACTGGCCAAGAAGGCAAGGAACTGACGAGCTTTAGC
CTGGAAGAGTGCGATGGAGGGCCACATGAATTCCGGTACATTATGCGTAG
CGACCTGTTACGCCAACTTTTGAAAATTGTGCCCAAGCAACGAGTGGCAT
ATAACAAGGCCGTGGTGGGGTTTCGGGAGGATAAGGGAGAAGGAGTGGTA
ATAGCCGAGTTGTCTTGCGGGCAAAAGATCCGATGCAAAGCTTTGGTGGG
GGCGGACGGCGTAGGGAGTACGGTGCACAAATTACTTTTTCCCGGACAAA
AGCTGGCCAACTATGCCGGTTATCAGGCCATTCGTGGTGTGGCCACGATA
TCAAAAAGTGGCAGCTTACCCCCCTTCTTCACGTTTGAAAGAGGGGTGGT
AAATCAAGTGTGGGGCGCTGGCGTGCGGCTTGGTACCTTTCGAATGACGG
AGACGAGCCTGTATTGGTTTGTGACGTACAATGACCAGCAGCGTGAAGCA
GGCCGCGACGATGATGGTGCAGAATTGCTGCAGAAAGTTCGAAGCCTGCT
TGCTGGGTGGGATGCACGGTGGGGCATTGACACAATTCTTAAAAATACAC
CCGCGCAAGACGTGCTTCGCACTAGCATCGGCGACAGATGGCCAAAGCCT
TTGGGTAATTGGGGTCAAGGCCGCGTGACACTGCTAGGGGATGCTGCCCA
TCCCATGACGCCCAATCTGGGCCAGGGCGGGGCGGCTGGCATGGAGGATG
CCTTAGTGCTCGGAGAGCTCTTAGTAGCTGCCTTGGACAAGGGCGACGTG
GGGGCGGAGACGGTTCCTCAAGCCTTGCGAGCCTACGAAAAGGAACGTGG
GCGCCGCATCACATACCTGACGCTCAAATCATTTATCTTTGGGTTTTTAC
TCCAAATACCGTACTCGCCCGTCACCTTTGTTAGGGACAATTTGGCCCTT
CCCTTGGTTTTCAAACCGCGGTCGTTCTTATCCCACACAAAATTCGAGGC
ACCACCTCTTCCAAGCAAAGTGGAGAAGAAAAAAAGGCGTATGTTTCCCC
TCATGTAA
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protein sequence of NO17G01820.1

>NO17G01820.1-protein ID=NO17G01820.1-protein|Name=NO17G01820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=486bp
MTGRRSGVPVFLVYSCAPLLLLLLLASSPVVHAFRPVSRNPKCYQQRTRA
QMAITMATDNTLETEVLIVGVGPAGVSLAADLERRGIIDYLLVEKASSPR
EGGTAIGFWTNAWRCLESLGVAEGLRKSYLQGERVRIGTGQEGKELTSFS
LEECDGGPHEFRYIMRSDLLRQLLKIVPKQRVAYNKAVVGFREDKGEGVV
IAELSCGQKIRCKALVGADGVGSTVHKLLFPGQKLANYAGYQAIRGVATI
SKSGSLPPFFTFERGVVNQVWGAGVRLGTFRMTETSLYWFVTYNDQQREA
GRDDDGAELLQKVRSLLAGWDARWGIDTILKNTPAQDVLRTSIGDRWPKP
LGNWGQGRVTLLGDAAHPMTPNLGQGGAAGMEDALVLGELLVAALDKGDV
GAETVPQALRAYEKERGRRITYLTLKSFIFGFLLQIPYSPVTFVRDNLAL
PLVFKPRSFLSHTKFEAPPLPSKVEKKKRRMFPLM*
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mRNA from alignment at chr17:523796..525253+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G01820.1 ID=NO17G01820.1|Name=NO17G01820.1|organism=Nannochloropsis oceanica|type=mRNA|length=1458bp|location=Sequence derived from alignment at chr17:523796..525253+ (Nannochloropsis oceanica)
ATGACGGGTAGGAGAAGTGGTGTACCGGTTTTCCTGGTATATTCATGTGC TCCCTTGCTTCTTCTCCTCCTTCTCGCCTCATCCCCAGTCGTACACGCCT TCCGCCCCGTCAGTCGTAATCCAAAGTGCTACCAGCAACGCACCCGTGCA CAAATGGCCATCACGATGGCAACAGACAATACCCTGGAAACAGAAGTCTT AATTGTTGGCGTGGGTCCTGCGGGAGTATCGCTTGCTGCGGACCTGGAGC GTCGAGGCATCATCGATTACCTCCTGGTCGAGAAGGCAAGCTCACCGCGT GAAGGGGGCACAGCAATAGGCTTTTGGACTAATGCCTGGCGGTGCTTGGA GAGCTTGGGGGTGGCGGAGGGATTGCGAAAATCTTATTTACAAGGCGAAC GCGTGCGTATTGGAACTGGCCAAGAAGGCAAGGAACTGACGAGCTTTAGC CTGGAAGAGTGCGATGGAGGGCCACATGAATTCCGGTACATTATGCGTAG CGACCTGTTACGCCAACTTTTGAAAATTGTGCCCAAGCAACGAGTGGCAT ATAACAAGGCCGTGGTGGGGTTTCGGGAGGATAAGGGAGAAGGAGTGGTA ATAGCCGAGTTGTCTTGCGGGCAAAAGATCCGATGCAAAGCTTTGGTGGG GGCGGACGGCGTAGGGAGTACGGTGCACAAATTACTTTTTCCCGGACAAA AGCTGGCCAACTATGCCGGTTATCAGGCCATTCGTGGTGTGGCCACGATA TCAAAAAGTGGCAGCTTACCCCCCTTCTTCACGTTTGAAAGAGGGGTGGT AAATCAAGTGTGGGGCGCTGGCGTGCGGCTTGGTACCTTTCGAATGACGG AGACGAGCCTGTATTGGTTTGTGACGTACAATGACCAGCAGCGTGAAGCA GGCCGCGACGATGATGGTGCAGAATTGCTGCAGAAAGTTCGAAGCCTGCT TGCTGGGTGGGATGCACGGTGGGGCATTGACACAATTCTTAAAAATACAC CCGCGCAAGACGTGCTTCGCACTAGCATCGGCGACAGATGGCCAAAGCCT TTGGGTAATTGGGGTCAAGGCCGCGTGACACTGCTAGGGGATGCTGCCCA TCCCATGACGCCCAATCTGGGCCAGGGCGGGGCGGCTGGCATGGAGGATG CCTTAGTGCTCGGAGAGCTCTTAGTAGCTGCCTTGGACAAGGGCGACGTG GGGGCGGAGACGGTTCCTCAAGCCTTGCGAGCCTACGAAAAGGAACGTGG GCGCCGCATCACATACCTGACGCTCAAATCATTTATCTTTGGGTTTTTAC TCCAAATACCGTACTCGCCCGTCACCTTTGTTAGGGACAATTTGGCCCTT CCCTTGGTTTTCAAACCGCGGTCGTTCTTATCCCACACAAAATTCGAGGC ACCACCTCTTCCAAGCAAAGTGGAGAAGAAAAAAAGGCGTATGTTTCCCC TCATGTAA
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Coding sequence (CDS) from alignment at chr17:523796..525253+

>NO17G01820.1 ID=NO17G01820.1|Name=NO17G01820.1|organism=Nannochloropsis oceanica|type=CDS|length=1458bp|location=Sequence derived from alignment at chr17:523796..525253+ (Nannochloropsis oceanica)
ATGACGGGTAGGAGAAGTGGTGTACCGGTTTTCCTGGTATATTCATGTGC
TCCCTTGCTTCTTCTCCTCCTTCTCGCCTCATCCCCAGTCGTACACGCCT
TCCGCCCCGTCAGTCGTAATCCAAAGTGCTACCAGCAACGCACCCGTGCA
CAAATGGCCATCACGATGGCAACAGACAATACCCTGGAAACAGAAGTCTT
AATTGTTGGCGTGGGTCCTGCGGGAGTATCGCTTGCTGCGGACCTGGAGC
GTCGAGGCATCATCGATTACCTCCTGGTCGAGAAGGCAAGCTCACCGCGT
GAAGGGGGCACAGCAATAGGCTTTTGGACTAATGCCTGGCGGTGCTTGGA
GAGCTTGGGGGTGGCGGAGGGATTGCGAAAATCTTATTTACAAGGCGAAC
GCGTGCGTATTGGAACTGGCCAAGAAGGCAAGGAACTGACGAGCTTTAGC
CTGGAAGAGTGCGATGGAGGGCCACATGAATTCCGGTACATTATGCGTAG
CGACCTGTTACGCCAACTTTTGAAAATTGTGCCCAAGCAACGAGTGGCAT
ATAACAAGGCCGTGGTGGGGTTTCGGGAGGATAAGGGAGAAGGAGTGGTA
ATAGCCGAGTTGTCTTGCGGGCAAAAGATCCGATGCAAAGCTTTGGTGGG
GGCGGACGGCGTAGGGAGTACGGTGCACAAATTACTTTTTCCCGGACAAA
AGCTGGCCAACTATGCCGGTTATCAGGCCATTCGTGGTGTGGCCACGATA
TCAAAAAGTGGCAGCTTACCCCCCTTCTTCACGTTTGAAAGAGGGGTGGT
AAATCAAGTGTGGGGCGCTGGCGTGCGGCTTGGTACCTTTCGAATGACGG
AGACGAGCCTGTATTGGTTTGTGACGTACAATGACCAGCAGCGTGAAGCA
GGCCGCGACGATGATGGTGCAGAATTGCTGCAGAAAGTTCGAAGCCTGCT
TGCTGGGTGGGATGCACGGTGGGGCATTGACACAATTCTTAAAAATACAC
CCGCGCAAGACGTGCTTCGCACTAGCATCGGCGACAGATGGCCAAAGCCT
TTGGGTAATTGGGGTCAAGGCCGCGTGACACTGCTAGGGGATGCTGCCCA
TCCCATGACGCCCAATCTGGGCCAGGGCGGGGCGGCTGGCATGGAGGATG
CCTTAGTGCTCGGAGAGCTCTTAGTAGCTGCCTTGGACAAGGGCGACGTG
GGGGCGGAGACGGTTCCTCAAGCCTTGCGAGCCTACGAAAAGGAACGTGG
GCGCCGCATCACATACCTGACGCTCAAATCATTTATCTTTGGGTTTTTAC
TCCAAATACCGTACTCGCCCGTCACCTTTGTTAGGGACAATTTGGCCCTT
CCCTTGGTTTTCAAACCGCGGTCGTTCTTATCCCACACAAAATTCGAGGC
ACCACCTCTTCCAAGCAAAGTGGAGAAGAAAAAAAGGCGTATGTTTCCCC
TCATGTAA
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Synonyms
Publications