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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr17 | genome | chr17:523796..525253 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO17G01820.1 vs.
Match: ANT70527.1 (zeaxanthin epoxidase 2 [Nannochloropsis oceanica]) HSP 1 Score: 921.0 bits (2379), Expect = 1.500e-264 Identity = 456/456 (100.00%), Postives = 456/456 (100.00%), Query Frame = 0
Query: 30 VVHAFRPVSRNPKCYQQRTRAQMAITMATDNTLETEVLIVGVGPAGVSLAADLERRGIIDYLLVEKASSPREGGTAIGFWTNAWRCLESLGVAEGLRKSYLQGERVRIGTGQEGKELTSFSLEECDGGPHEFRYIMRSDLLRQLLKIVPKQRVAYNKAVVGFREDKGEGVVIAELSCGQKIRCKALVGADGVGSTVHKLLFPGQKLANYAGYQAIRGVATISKSGSLPPFFTFERGVVNQVWGAGVRLGTFRMTETSLYWFVTYNDQQREAGRDDDGAELLQKVRSLLAGWDARWGIDTILKNTPAQDVLRTSIGDRWPKPLGNWGQGRVTLLGDAAHPMTPNLGQGGAAGMEDALVLGELLVAALDKGDVGAETVPQALRAYEKERGRRITYLTLKSFIFGFLLQIPYSPVTFVRDNLALPLVFKPRSFLSHTKFEAPPLPSKVEKKKRRMFPLM 486
VVHAFRPVSRNPKCYQQRTRAQMAITMATDNTLETEVLIVGVGPAGVSLAADLERRGIIDYLLVEKASSPREGGTAIGFWTNAWRCLESLGVAEGLRKSYLQGERVRIGTGQEGKELTSFSLEECDGGPHEFRYIMRSDLLRQLLKIVPKQRVAYNKAVVGFREDKGEGVVIAELSCGQKIRCKALVGADGVGSTVHKLLFPGQKLANYAGYQAIRGVATISKSGSLPPFFTFERGVVNQVWGAGVRLGTFRMTETSLYWFVTYNDQQREAGRDDDGAELLQKVRSLLAGWDARWGIDTILKNTPAQDVLRTSIGDRWPKPLGNWGQGRVTLLGDAAHPMTPNLGQGGAAGMEDALVLGELLVAALDKGDVGAETVPQALRAYEKERGRRITYLTLKSFIFGFLLQIPYSPVTFVRDNLALPLVFKPRSFLSHTKFEAPPLPSKVEKKKRRMFPLM
Sbjct: 3 VVHAFRPVSRNPKCYQQRTRAQMAITMATDNTLETEVLIVGVGPAGVSLAADLERRGIIDYLLVEKASSPREGGTAIGFWTNAWRCLESLGVAEGLRKSYLQGERVRIGTGQEGKELTSFSLEECDGGPHEFRYIMRSDLLRQLLKIVPKQRVAYNKAVVGFREDKGEGVVIAELSCGQKIRCKALVGADGVGSTVHKLLFPGQKLANYAGYQAIRGVATISKSGSLPPFFTFERGVVNQVWGAGVRLGTFRMTETSLYWFVTYNDQQREAGRDDDGAELLQKVRSLLAGWDARWGIDTILKNTPAQDVLRTSIGDRWPKPLGNWGQGRVTLLGDAAHPMTPNLGQGGAAGMEDALVLGELLVAALDKGDVGAETVPQALRAYEKERGRRITYLTLKSFIFGFLLQIPYSPVTFVRDNLALPLVFKPRSFLSHTKFEAPPLPSKVEKKKRRMFPLM 458
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO17G01820.1 ID=NO17G01820.1|Name=NO17G01820.1|organism=Nannochloropsis oceanica|type=mRNA|length=1458bp ATGACGGGTAGGAGAAGTGGTGTACCGGTTTTCCTGGTATATTCATGTGC TCCCTTGCTTCTTCTCCTCCTTCTCGCCTCATCCCCAGTCGTACACGCCT TCCGCCCCGTCAGTCGTAATCCAAAGTGCTACCAGCAACGCACCCGTGCA CAAATGGCCATCACGATGGCAACAGACAATACCCTGGAAACAGAAGTCTT AATTGTTGGCGTGGGTCCTGCGGGAGTATCGCTTGCTGCGGACCTGGAGC GTCGAGGCATCATCGATTACCTCCTGGTCGAGAAGGCAAGCTCACCGCGT GAAGGGGGCACAGCAATAGGCTTTTGGACTAATGCCTGGCGGTGCTTGGA GAGCTTGGGGGTGGCGGAGGGATTGCGAAAATCTTATTTACAAGGCGAAC GCGTGCGTATTGGAACTGGCCAAGAAGGCAAGGAACTGACGAGCTTTAGC CTGGAAGAGTGCGATGGAGGGCCACATGAATTCCGGTACATTATGCGTAG CGACCTGTTACGCCAACTTTTGAAAATTGTGCCCAAGCAACGAGTGGCAT ATAACAAGGCCGTGGTGGGGTTTCGGGAGGATAAGGGAGAAGGAGTGGTA ATAGCCGAGTTGTCTTGCGGGCAAAAGATCCGATGCAAAGCTTTGGTGGG GGCGGACGGCGTAGGGAGTACGGTGCACAAATTACTTTTTCCCGGACAAA AGCTGGCCAACTATGCCGGTTATCAGGCCATTCGTGGTGTGGCCACGATA TCAAAAAGTGGCAGCTTACCCCCCTTCTTCACGTTTGAAAGAGGGGTGGT AAATCAAGTGTGGGGCGCTGGCGTGCGGCTTGGTACCTTTCGAATGACGG AGACGAGCCTGTATTGGTTTGTGACGTACAATGACCAGCAGCGTGAAGCA GGCCGCGACGATGATGGTGCAGAATTGCTGCAGAAAGTTCGAAGCCTGCT TGCTGGGTGGGATGCACGGTGGGGCATTGACACAATTCTTAAAAATACAC CCGCGCAAGACGTGCTTCGCACTAGCATCGGCGACAGATGGCCAAAGCCT TTGGGTAATTGGGGTCAAGGCCGCGTGACACTGCTAGGGGATGCTGCCCA TCCCATGACGCCCAATCTGGGCCAGGGCGGGGCGGCTGGCATGGAGGATG CCTTAGTGCTCGGAGAGCTCTTAGTAGCTGCCTTGGACAAGGGCGACGTG GGGGCGGAGACGGTTCCTCAAGCCTTGCGAGCCTACGAAAAGGAACGTGG GCGCCGCATCACATACCTGACGCTCAAATCATTTATCTTTGGGTTTTTAC TCCAAATACCGTACTCGCCCGTCACCTTTGTTAGGGACAATTTGGCCCTT CCCTTGGTTTTCAAACCGCGGTCGTTCTTATCCCACACAAAATTCGAGGC ACCACCTCTTCCAAGCAAAGTGGAGAAGAAAAAAAGGCGTATGTTTCCCC TCATGTAA back to topprotein sequence of NO17G01820.1 >NO17G01820.1-protein ID=NO17G01820.1-protein|Name=NO17G01820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=486bp MTGRRSGVPVFLVYSCAPLLLLLLLASSPVVHAFRPVSRNPKCYQQRTRA QMAITMATDNTLETEVLIVGVGPAGVSLAADLERRGIIDYLLVEKASSPR EGGTAIGFWTNAWRCLESLGVAEGLRKSYLQGERVRIGTGQEGKELTSFS LEECDGGPHEFRYIMRSDLLRQLLKIVPKQRVAYNKAVVGFREDKGEGVV IAELSCGQKIRCKALVGADGVGSTVHKLLFPGQKLANYAGYQAIRGVATI SKSGSLPPFFTFERGVVNQVWGAGVRLGTFRMTETSLYWFVTYNDQQREA GRDDDGAELLQKVRSLLAGWDARWGIDTILKNTPAQDVLRTSIGDRWPKP LGNWGQGRVTLLGDAAHPMTPNLGQGGAAGMEDALVLGELLVAALDKGDV GAETVPQALRAYEKERGRRITYLTLKSFIFGFLLQIPYSPVTFVRDNLAL PLVFKPRSFLSHTKFEAPPLPSKVEKKKRRMFPLM* back to topmRNA from alignment at chr17:523796..525253+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO17G01820.1 ID=NO17G01820.1|Name=NO17G01820.1|organism=Nannochloropsis oceanica|type=mRNA|length=1458bp|location=Sequence derived from alignment at chr17:523796..525253+ (Nannochloropsis oceanica) ATGACGGGTAGGAGAAGTGGTGTACCGGTTTTCCTGGTATATTCATGTGC
TCCCTTGCTTCTTCTCCTCCTTCTCGCCTCATCCCCAGTCGTACACGCCT
TCCGCCCCGTCAGTCGTAATCCAAAGTGCTACCAGCAACGCACCCGTGCA
CAAATGGCCATCACGATGGCAACAGACAATACCCTGGAAACAGAAGTCTT
AATTGTTGGCGTGGGTCCTGCGGGAGTATCGCTTGCTGCGGACCTGGAGC
GTCGAGGCATCATCGATTACCTCCTGGTCGAGAAGGCAAGCTCACCGCGT
GAAGGGGGCACAGCAATAGGCTTTTGGACTAATGCCTGGCGGTGCTTGGA
GAGCTTGGGGGTGGCGGAGGGATTGCGAAAATCTTATTTACAAGGCGAAC
GCGTGCGTATTGGAACTGGCCAAGAAGGCAAGGAACTGACGAGCTTTAGC
CTGGAAGAGTGCGATGGAGGGCCACATGAATTCCGGTACATTATGCGTAG
CGACCTGTTACGCCAACTTTTGAAAATTGTGCCCAAGCAACGAGTGGCAT
ATAACAAGGCCGTGGTGGGGTTTCGGGAGGATAAGGGAGAAGGAGTGGTA
ATAGCCGAGTTGTCTTGCGGGCAAAAGATCCGATGCAAAGCTTTGGTGGG
GGCGGACGGCGTAGGGAGTACGGTGCACAAATTACTTTTTCCCGGACAAA
AGCTGGCCAACTATGCCGGTTATCAGGCCATTCGTGGTGTGGCCACGATA
TCAAAAAGTGGCAGCTTACCCCCCTTCTTCACGTTTGAAAGAGGGGTGGT
AAATCAAGTGTGGGGCGCTGGCGTGCGGCTTGGTACCTTTCGAATGACGG
AGACGAGCCTGTATTGGTTTGTGACGTACAATGACCAGCAGCGTGAAGCA
GGCCGCGACGATGATGGTGCAGAATTGCTGCAGAAAGTTCGAAGCCTGCT
TGCTGGGTGGGATGCACGGTGGGGCATTGACACAATTCTTAAAAATACAC
CCGCGCAAGACGTGCTTCGCACTAGCATCGGCGACAGATGGCCAAAGCCT
TTGGGTAATTGGGGTCAAGGCCGCGTGACACTGCTAGGGGATGCTGCCCA
TCCCATGACGCCCAATCTGGGCCAGGGCGGGGCGGCTGGCATGGAGGATG
CCTTAGTGCTCGGAGAGCTCTTAGTAGCTGCCTTGGACAAGGGCGACGTG
GGGGCGGAGACGGTTCCTCAAGCCTTGCGAGCCTACGAAAAGGAACGTGG
GCGCCGCATCACATACCTGACGCTCAAATCATTTATCTTTGGGTTTTTAC
TCCAAATACCGTACTCGCCCGTCACCTTTGTTAGGGACAATTTGGCCCTT
CCCTTGGTTTTCAAACCGCGGTCGTTCTTATCCCACACAAAATTCGAGGC
ACCACCTCTTCCAAGCAAAGTGGAGAAGAAAAAAAGGCGTATGTTTCCCC
TCATGTAA back to topCoding sequence (CDS) from alignment at chr17:523796..525253+ >NO17G01820.1 ID=NO17G01820.1|Name=NO17G01820.1|organism=Nannochloropsis oceanica|type=CDS|length=1458bp|location=Sequence derived from alignment at chr17:523796..525253+ (Nannochloropsis oceanica) ATGACGGGTAGGAGAAGTGGTGTACCGGTTTTCCTGGTATATTCATGTGC TCCCTTGCTTCTTCTCCTCCTTCTCGCCTCATCCCCAGTCGTACACGCCT TCCGCCCCGTCAGTCGTAATCCAAAGTGCTACCAGCAACGCACCCGTGCA CAAATGGCCATCACGATGGCAACAGACAATACCCTGGAAACAGAAGTCTT AATTGTTGGCGTGGGTCCTGCGGGAGTATCGCTTGCTGCGGACCTGGAGC GTCGAGGCATCATCGATTACCTCCTGGTCGAGAAGGCAAGCTCACCGCGT GAAGGGGGCACAGCAATAGGCTTTTGGACTAATGCCTGGCGGTGCTTGGA GAGCTTGGGGGTGGCGGAGGGATTGCGAAAATCTTATTTACAAGGCGAAC GCGTGCGTATTGGAACTGGCCAAGAAGGCAAGGAACTGACGAGCTTTAGC CTGGAAGAGTGCGATGGAGGGCCACATGAATTCCGGTACATTATGCGTAG CGACCTGTTACGCCAACTTTTGAAAATTGTGCCCAAGCAACGAGTGGCAT ATAACAAGGCCGTGGTGGGGTTTCGGGAGGATAAGGGAGAAGGAGTGGTA ATAGCCGAGTTGTCTTGCGGGCAAAAGATCCGATGCAAAGCTTTGGTGGG GGCGGACGGCGTAGGGAGTACGGTGCACAAATTACTTTTTCCCGGACAAA AGCTGGCCAACTATGCCGGTTATCAGGCCATTCGTGGTGTGGCCACGATA TCAAAAAGTGGCAGCTTACCCCCCTTCTTCACGTTTGAAAGAGGGGTGGT AAATCAAGTGTGGGGCGCTGGCGTGCGGCTTGGTACCTTTCGAATGACGG AGACGAGCCTGTATTGGTTTGTGACGTACAATGACCAGCAGCGTGAAGCA GGCCGCGACGATGATGGTGCAGAATTGCTGCAGAAAGTTCGAAGCCTGCT TGCTGGGTGGGATGCACGGTGGGGCATTGACACAATTCTTAAAAATACAC CCGCGCAAGACGTGCTTCGCACTAGCATCGGCGACAGATGGCCAAAGCCT TTGGGTAATTGGGGTCAAGGCCGCGTGACACTGCTAGGGGATGCTGCCCA TCCCATGACGCCCAATCTGGGCCAGGGCGGGGCGGCTGGCATGGAGGATG CCTTAGTGCTCGGAGAGCTCTTAGTAGCTGCCTTGGACAAGGGCGACGTG GGGGCGGAGACGGTTCCTCAAGCCTTGCGAGCCTACGAAAAGGAACGTGG GCGCCGCATCACATACCTGACGCTCAAATCATTTATCTTTGGGTTTTTAC TCCAAATACCGTACTCGCCCGTCACCTTTGTTAGGGACAATTTGGCCCTT CCCTTGGTTTTCAAACCGCGGTCGTTCTTATCCCACACAAAATTCGAGGC ACCACCTCTTCCAAGCAAAGTGGAGAAGAAAAAAAGGCGTATGTTTCCCC TCATGTAA back to top
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