NO16G02700.1, NO16G02700.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G02700.1
Unique NameNO16G02700.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1107
Alignment locationchr16:778515..780534 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:778515..780534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G02700.1 vs.
Match: XP_005854605.1 (glutathione peroxidase [Nannochloropsis gaditana CCMP526]; EKU21757.1 glutathione peroxidase [Nannochloropsis gaditana CCMP526]; EWM23842.1 glutathione peroxidase [Nannochloropsis gaditana])

HSP 1 Score: 398.7 bits (1023), Expect = 2.000e-107
Identity = 218/327 (66.67%), Postives = 249/327 (76.15%), Query Frame = 0 
Query:    2 QQQQQQRPVSFPLLLRLVVLVATASSASAFVTRTLVNQPFRSIRATPKCYMSTDRNNGCQDSSF----PSSSFSRADLLKRTLAGATSLSFISLFNGGRRASAATTPEQGATELASTAPAPASPTASSASTPEAAPKGSVKTAYDYSVPYDGVRVPLANFKGKAVVVCNAKTDDPESLNQIPGLTYLTGKYSPKGLKIWIFTTEQGTFETDEDRVIRIKYYQQYGFGQYPNALIFDKIDVVGKRADPFYKYLCKTLKNPNKIARITLNFEKFLLDANGRPIRRYPRKYTAYDMEEDVKAAVAGLPLPPPSPKLIKAWRDAYVEAERN 325
            QQ  +  P     LL L+ LV  AS ++AFV+  L+ +    +    +C MS  +  G   +       S S +RADLLKRTL  A+S S + L  G R A A    E+GA + AS   A  S   +  S P  AP G +KTAYDY+VPYDGVRVPL NF+GKAVVVCNAKTDDPESL QIPGLTYLTGKYS KGLK+W+FTTEQGTFETDEDRVIRIKYYQQYGFGQYPN+L+FDKID+VGKRADPFYK+LCKTL+NPNKIARITLNFEKFLLDANGRP+RRYPR+YTAYDMEEDVKA +AG PLPPPSPKLIKAWRDAYVEAER+
Sbjct:    3 QQLHRPAPRRSSRLLLLLALVLGASYSNAFVSSPLLKK-LAPLAHKQRCRMSAPQEEGSSSTDLHTAQSSLSLNRADLLKRTLRAASSFSLVWL-TGQREADAG---EEGAPD-ASVEVAKESAQPAPVSPPATAP-GPLKTAYDYAVPYDGVRVPLGNFRGKAVVVCNAKTDDPESLAQIPGLTYLTGKYSKKGLKVWVFTTEQGTFETDEDRVIRIKYYQQYGFGQYPNSLVFDKIDIVGKRADPFYKFLCKTLRNPNKIARITLNFEKFLLDANGRPVRRYPRRYTAYDMEEDVKAVLAGEPLPPPSPKLIKAWRDAYVEAERS 322
The following BLAST results are available for this feature:
BLAST of NO16G02700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854605.12.000e-10766.67glutathione peroxidase [Nannochloropsis gaditana C... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G02700NO16G02700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G02700.1NO16G02700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G02700.1.cds1NO16G02700.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02700.1.cds2NO16G02700.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02700.1.cds3NO16G02700.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02700.1.cds4NO16G02700.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02700.1.cds5NO16G02700.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G02700.1 ID=NO16G02700.1|Name=NO16G02700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1107bp
ATGCAGCAGCAGCAGCAGCAGCGTCCCGTGTCCTTTCCCCTGCTCCTCCG
CCTTGTGGTGCTGGTCGCCACAGCTTCCAGTGCCAGTGCCTTTGTAACCC
GTACACTAGTGAACCAGCCTTTCCGCTCGATACGGGCCACACCAAAATGT
TACATGTCCACAGACAGAAACAATGGTTGTCAAGACTCCTCCTTCCCTTC
TTCCTCCTTCTCCCGCGCTGATCTCCTGAAGCGCACCCTCGCTGGGGCCA
CCTCCCTCTCCTTCATTTCCCTCTTCAACGGGGGAAGAAGAGCCTCCGCA
GCCACCACCCCTGAGCAGGGTGCGACCGAATTAGCCTCCACTGCTCCTGC
GCCTGCTTCTCCTACTGCTTCTTCTGCTTCTACTCCCGAGGCAGCTCCTA
AGGGCTCTGTCAAGACAGCGTATGACTATTCAGTGCCGTACGACGGGGTG
CGTGTGCCCCTGGCAAATTTCAAGGGCAAGGCCGTGGTGGTGTGCAATGC
CAAGACGGATGACCCGGAGAGCTTGAACCAGATTCCTGGCTTGACGTACT
TGACCGGCAAATACAGCCCCAAAGGCCTCAAGATCTGGATCTTCACCACG
GAGCAAGGCACGTTCGAGACGGACGAGGACCGAGTCATCCGCATCAAGTA
CTACCAACAGTATGGCTTTGGTCAGTACCCCAACGCCCTAATCTTCGACA
AAATCGACGTGGTGGGAAAACGCGCAGACCCCTTCTACAAGTACCTGTGC
AAGACCCTCAAGAACCCCAATAAAATCGCCCGCATCACCCTCAACTTTGA
GAAGTTCCTCCTCGACGCCAACGGTCGGCCCATTCGGCGGTATCCGCGGA
AATACACCGCTTACGACATGGAGGAGGACGTCAAGGCCGCTGTTGCTGGT
CTTCCCCTCCCTCCCCCTAGCCCTAAGCTGATCAAGGCATGGAGGGACGC
GTATGTGGAGGCGGAGAGAAATGTGACGAGAGATAAGGCCAGTCGGAAAA
AGTGCGCGACGGATACATGCCGGCAGGACGAATACAGGAGATTTGAAGAC
CGAAGGGACATGGGACAAGTGAGGCAGAGGCAGGAAAGTAGCCCAGAACA
AAAGTAG
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protein sequence of NO16G02700.1

>NO16G02700.1-protein ID=NO16G02700.1-protein|Name=NO16G02700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=369bp
MQQQQQQRPVSFPLLLRLVVLVATASSASAFVTRTLVNQPFRSIRATPKC
YMSTDRNNGCQDSSFPSSSFSRADLLKRTLAGATSLSFISLFNGGRRASA
ATTPEQGATELASTAPAPASPTASSASTPEAAPKGSVKTAYDYSVPYDGV
RVPLANFKGKAVVVCNAKTDDPESLNQIPGLTYLTGKYSPKGLKIWIFTT
EQGTFETDEDRVIRIKYYQQYGFGQYPNALIFDKIDVVGKRADPFYKYLC
KTLKNPNKIARITLNFEKFLLDANGRPIRRYPRKYTAYDMEEDVKAAVAG
LPLPPPSPKLIKAWRDAYVEAERNVTRDKASRKKCATDTCRQDEYRRFED
RRDMGQVRQRQESSPEQK*
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mRNA from alignment at chr16:778515..780534-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G02700.1 ID=NO16G02700.1|Name=NO16G02700.1|organism=Nannochloropsis oceanica|type=mRNA|length=2020bp|location=Sequence derived from alignment at chr16:778515..780534- (Nannochloropsis oceanica)
ATGCAGCAGCAGCAGCAGCAGCGTCCCGTGTCCTTTCCCCTGCTCCTCCG
CCTTGTGGTGCTGGTCGCCACAGCTTCCAGTGCCAGTGCCTTTGTAACCC
GTACACTAGTGAACCAGGTATATGGATCCTATTGGACACACGTGTATGGA
GAGGTCATTGACCCGTCCCTCCGTCCTTCTTCTCACGGCTGGACCCTCAT
GATGAGAACATTTGACTTCCTTTCTCCCGCTTCCTTCCTCCGCCAAACCT
TCCACCCTCTGCACGCACCAGGAATGGCAAACCAACTGATTAAAATGTTA
TTTTCCTGTTTCTAATAGTTTCAACCCTTTCCCCTCCCTCCGTTCCTCCC
TTACCCCTTTTCATCCTTCCCATCCAGCCTTTCCGCTCGATACGGGCCAC
ACCAAAATGTTACATGTCCACAGACAGAAACAATGGTTGTCAAGACTCCT
CCTTCCCTTCTTCCTCCTTCTCCCGCGCTGATCTCCTGAAGCGCACCCTC
GCTGGGGCCACCTCCCTCTCCTTCATTTCCCTCTTCAACGGGGGAAGAAG
AGCCTCCGCAGCCACCACCCCTGAGCAGGGTGCGACCGAATTAGCCTCCA
CTGCTCCTGCGCCTGCTTCTCCTACTGCTTCTTCTGCTTCTACTCCCGAG
GCAGCTCCTAAGGGCTCTGTCAAGACAGCGTATGACTATTCAGTGCCGTA
CGACGGGGTGCGTGTGCCCCTGGCAAATTTCAAGGGCAAGGCCGTGGTGG
TGTGCAATGCCAAGACGGATGACCCGGAGAGCTTGAACCAGATTCCTGGC
TTGACGTACTTGACCGGCAAATACAGGTGAGAGAGACCAATCATGGTCTG
GTCGTCTGTCTCGTTTGACTTGACGAGGCATTCAACCGTCCATCCCTTGT
CATTTCCCACCTACTCATGCCTACATGATTAAACTTATTCAACCATATGC
CTCCTCCCCCCCCCACGTTTCACTCAGCCCCAAAGGCCTCAAGATCTGGA
TCTTCACCACGGAGCAAGGCACGTTCGAGACGGACGAGGACCGAGTCATC
CGCATCAAGTACTACCAACAGTATGGCTTTGGTCAGTACCCCAACGCCCT
AATCTTCGACAAAATCGACGTGGTGGGAAAACGCGCAGACCCCTTCTACA
AGTACCTGTGCAAGACCCTCAAGAACCCCAATAAAATCGCCCGCATCACC
CTCAACTTTGAGAAGTTCCTCCTCGACGCCAACGGTCGGCCCATTCGGCG
GTATCCGCGGAAATACACCGCTTACGACATGGAGGAGGACGTCAAGGCCG
CTGTTGCTGGTCTTCCCCTCCCTCCCCCTAGCCCTAAGCTGATCAAGGCA
TGGAGGGACGCGTATGTGGAGGCGGAGAGAAGTGAGTACGCTTTTAAGAA
GGGATTGAACTACTACGAACCGCTTGGAGAAGACCAACGGAATCTGCCTT
AGGCGTGGTGTCCTTCTTCCCTTCCTTGTTTTTTTCTCTGCTGCTTGCTC
GCTCGCTTCAGTGTTAACTTGTTTGCTACGCCTCCCTGGGCCAGATGTGA
CGAGAGATAAGGCCAGTCGGAAAAAGTGCGCGACGGATACATGCCGGCAG
GACGAATACAGGAGATTTGAAGACCGAAGGTGAGGCATGGGAGGAGGGAG
AGCGAGTGAGAAAGCGGAGAGAGCATGAATGATAGCACGCGCGAGAGATC
GCCGGAGGCATGGAATGAGAAAGGGATGTAGGGAGGGATGGAGGAAGGAA
GTGAGGCGGAGCGAGGGAGAGCTTAAAGCAACTCATACATGTTGCGGAGA
ACATTTCAAAGTAAATAGAAATCATGCATCTCCCTATCGACTATCGGCAC
ATGCACGTTGCTTTCTTATGGACAGGTTAAAGCCCCCTCTTGATGTGCCA
GGAGCACCGACGACATTGATCACCTTGCCCGTTCTCTCCTCACTCTTCCC
CTCTCCTTCACACACCAGGGACATGGGACAAGTGAGGCAGAGGCAGGAAA
GTAGCCCAGAACAAAAGTAG
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Coding sequence (CDS) from alignment at chr16:778515..780534-

>NO16G02700.1 ID=NO16G02700.1|Name=NO16G02700.1|organism=Nannochloropsis oceanica|type=CDS|length=1107bp|location=Sequence derived from alignment at chr16:778515..780534- (Nannochloropsis oceanica)
ATGCAGCAGCAGCAGCAGCAGCGTCCCGTGTCCTTTCCCCTGCTCCTCCG
CCTTGTGGTGCTGGTCGCCACAGCTTCCAGTGCCAGTGCCTTTGTAACCC
GTACACTAGTGAACCAGCCTTTCCGCTCGATACGGGCCACACCAAAATGT
TACATGTCCACAGACAGAAACAATGGTTGTCAAGACTCCTCCTTCCCTTC
TTCCTCCTTCTCCCGCGCTGATCTCCTGAAGCGCACCCTCGCTGGGGCCA
CCTCCCTCTCCTTCATTTCCCTCTTCAACGGGGGAAGAAGAGCCTCCGCA
GCCACCACCCCTGAGCAGGGTGCGACCGAATTAGCCTCCACTGCTCCTGC
GCCTGCTTCTCCTACTGCTTCTTCTGCTTCTACTCCCGAGGCAGCTCCTA
AGGGCTCTGTCAAGACAGCGTATGACTATTCAGTGCCGTACGACGGGGTG
CGTGTGCCCCTGGCAAATTTCAAGGGCAAGGCCGTGGTGGTGTGCAATGC
CAAGACGGATGACCCGGAGAGCTTGAACCAGATTCCTGGCTTGACGTACT
TGACCGGCAAATACAGCCCCAAAGGCCTCAAGATCTGGATCTTCACCACG
GAGCAAGGCACGTTCGAGACGGACGAGGACCGAGTCATCCGCATCAAGTA
CTACCAACAGTATGGCTTTGGTCAGTACCCCAACGCCCTAATCTTCGACA
AAATCGACGTGGTGGGAAAACGCGCAGACCCCTTCTACAAGTACCTGTGC
AAGACCCTCAAGAACCCCAATAAAATCGCCCGCATCACCCTCAACTTTGA
GAAGTTCCTCCTCGACGCCAACGGTCGGCCCATTCGGCGGTATCCGCGGA
AATACACCGCTTACGACATGGAGGAGGACGTCAAGGCCGCTGTTGCTGGT
CTTCCCCTCCCTCCCCCTAGCCCTAAGCTGATCAAGGCATGGAGGGACGC
GTATGTGGAGGCGGAGAGAAATGTGACGAGAGATAAGGCCAGTCGGAAAA
AGTGCGCGACGGATACATGCCGGCAGGACGAATACAGGAGATTTGAAGAC
CGAAGGGACATGGGACAAGTGAGGCAGAGGCAGGAAAGTAGCCCAGAACA
AAAGTAG
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Synonyms
Publications