NO16G02080.1, NO16G02080.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G02080.1
Unique NameNO16G02080.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2414
Alignment locationchr16:610259..613096 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:610259..613096 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO16G02080.1 vs.
Match: EWM23912.1 (ferredoxin-dependent bilin reductase [Nannochloropsis gaditana])

HSP 1 Score: 562.8 bits (1449), Expect = 8.700e-157
Identity = 280/376 (74.47%), Postives = 322/376 (85.64%), Query Frame = 0 
Query:    1 MAWTRPSTTSGSILRHHRCPVLALLLCLYAVVIDSFMVPAHTKASSSRRSRVAGAAPTSRLIRGSTVQAREPKVSTSTSTSTTPTSNPPNTPSAAQPPVVAPVVPQEALLPASFFQSLPWSRSINGDGAETLLYMPFLEAQMRHLEVHGGFVRELPVPESVSYTRAAKKASHMASFCVETEDFRKIRFTYMDGGKGLQVFNSVWYPRFDTDAPILGIDLLLFGGHKMLAVVDFQPLSQEEEYKERFISQLGPIKAKYPALSESMSNRYYEDTRWFSEHMLFGRLQETSQVESTLFPAFNEYIAVYSDTVKRSRGSVKD---EEKVLARHRAYDEYQLVHDPAHGLFTGYFGPKFAHDMLTFQFDLADPALLQQQKK 374
            M W++PS  SG + R HRCPVLA+LLC+YA+V++SF++P  ++A++  R R  GAA  S+L+R STVQ REP ++TS  +S   T++PP+      PPVVA  V  E LLP S+FQSLPW+RSI GDG ETLLYMPFLEAQMRHLE   GFVR+LPVPE+V+YTRAAKKAS M SFCVETEDFRKIRFTYMDGGKGLQVFNSVWYPRFDTDAPILGIDLLLF GHKMLAVVDFQPLSQE  YK+RFI+QLGPIKAKYPAL+E+MSNRYYEDTRWFSEHMLFGRL+E+SQV+STLFPAF EY+ VYSDTV+RSRG V D   EE+V++RHRAYDEYQLVHDPAHGLFTGYFG +FAHDMLTFQFD+ADPALL Q+KK
Sbjct:    1 MGWSKPSQASGGLFRRHRCPVLAILLCIYAIVVESFLIPTSSRATAVLRKRT-GAALNSQLVRKSTVQPREP-LTTSGGSSPPATADPPH------PPVVAHAVAAETLLPPSYFQSLPWTRSITGDGPETLLYMPFLEAQMRHLEAQRGFVRQLPVPENVAYTRAAKKASQMGSFCVETEDFRKIRFTYMDGGKGLQVFNSVWYPRFDTDAPILGIDLLLFAGHKMLAVVDFQPLSQEAAYKQRFINQLGPIKAKYPALNEAMSNRYYEDTRWFSEHMLFGRLKESSQVQSTLFPAFMEYLTVYSDTVRRSRGCVPDAEVEERVVSRHRAYDEYQLVHDPAHGLFTGYFGAQFAHDMLTFQFDMADPALLLQKKK 368
The following BLAST results are available for this feature:
BLAST of NO16G02080.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23912.18.700e-15774.47ferredoxin-dependent bilin reductase [Nannochlorop... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G02080NO16G02080Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G02080.1NO16G02080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G02080.1.cds1NO16G02080.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02080.1.cds2NO16G02080.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02080.1.cds3NO16G02080.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G02080.1 ID=NO16G02080.1|Name=NO16G02080.1|organism=Nannochloropsis oceanica|type=mRNA|length=2414bp
ATTTTCTTTGACGCTTCGGTTCATGTGACAATTAAAAACTGTGGCTCTTT
CGACTACTTTGCGCTGTCGGACACTCGTAGAGACCAAAACAGACTGCAGA
CCAAAACTGTCGGCAAGCTGAAGCATATCCAGTCGAGTTGAAGGCAAATA
AATGGAATTGATGCTTTAAGCCTCCGTTGCCCCTGGAATCCAATCGAGGA
GACCCAGGGCGTCCCAGAGTCAGAGGCGATGTGCAGCCGGTAAAGAGTAC
CGGCAGGGCTGCCGCTCTTCAGGCTGTATGGTCACTCTGATTGATCTCGT
CTACTGTATCACCAAACGCCCTGGACTCTTCTCACGCACCCGTCTTTGAC
CTCTCTCCACCAAACAAAACAGGTGGCGCAAAGAGCTCGCTTGTAGCAGC
TAGCCGTCCTTGTTCCCTTTCATCTGGGTCGCGACAGCCCGACATCCAAC
CACCAAGCCATGTCCTGCAGTCTGTAACAATACAAACACACACCACACGT
CTACCTCGCCCGCCTGCCGATCAGCTCATACCCTCTGTCTGGCAAAAACT
TCAGAAAGGTCCAACAACCCTCCGCACGACTTCACACAAGCAATTATGGC
TTGGACCAGACCCTCCACCACCAGCGGCAGTATCCTCCGTCACCACCGGT
GCCCGGTGCTAGCTCTGCTACTATGCCTCTATGCGGTTGTCATCGACTCT
TTCATGGTGCCTGCCCACACCAAGGCTTCATCAAGCCGGAGATCAAGAGT
CGCTGGCGCAGCGCCCACCTCGCGGCTAATTCGTGGATCAACGGTGCAAG
CCCGTGAGCCCAAGGTGAGCACCAGCACCAGCACCAGCACTACTCCTACG
AGCAACCCTCCTAACACCCCTTCCGCCGCTCAACCCCCCGTGGTCGCCCC
CGTTGTTCCTCAAGAAGCCTTGCTACCGGCATCCTTTTTCCAATCATTGC
CTTGGTCTCGCTCTATCAACGGCGATGGTGCTGAGACATTGTTGTACATG
CCTTTCTTGGAGGCGCAGATGCGACATCTCGAGGTCCATGGTGGCTTTGT
CCGCGAGCTGCCGGTGCCTGAGTCTGTCTCTTACACACGAGCTGCGAAAA
AGGCGTCGCATATGGCGAGCTTCTGCGTGGAGACTGAAGACTTCAGAAAG
ATCCGCTTCACCTACATGGACGGAGGGAAGGGCCTGCAGGTTTTCAACTC
TGTGTGGTATCCGCGCTTCGACACGGACGCTCCCATACTGGGCATCGACT
TGTTGTTGTTCGGAGGGCACAAGATGTTGGCCGTGGTGGACTTCCAGCCC
TTATCCCAGGAGGAGGAGTACAAGGAGAGGTTCATTTCCCAGCTGGGTCC
GATCAAGGCCAAGTATCCGGCATTGAGTGAGTCGATGAGCAACCGGTATT
ACGAGGACACACGGTGGTTCTCGGAGCATATGCTTTTTGGGCGGTTGCAG
GAGACGAGCCAAGTGGAGAGCACGTTATTCCCTGCGTTCAATGAGTACAT
TGCTGTGTATTCGGACACGGTCAAGAGGTCGAGGGGGTCGGTGAAGGACG
AGGAGAAGGTCTTGGCCAGGCATCGGGCTTATGACGAGTACCAGCTAGTC
CATGACCCGGCCCACGGGTTGTTCACTGGCTACTTCGGTCCCAAATTCGC
GCATGACATGCTGACGTTCCAGTTCGACCTAGCGGACCCGGCGTTGTTGC
AGCAACAAAAGAAGAAGGCTGGCATGGGAGGAGGAGGAGGTGCAGGAGGA
AATCCGCATGGGCAGGGAGGAGGTAACCCGCATGCGTAGCAGCAGCAGGA
GGGGAAAATTGAGGGCGGTGTGTCGTCAACATCTGTGGCGCAATGACGAA
AAACGGCGGCGGTGGGGTGAATAGAGTAGATGAAGGGCCATTGTGAAGAC
TGATAACGCGTGTGAAACAAGAGAAGAAAGAGATAGGAACAGACAGAGGA
TCGGGCAATCGGCTTTGGGGCGCCTACTAGGCGTGTGTGTGACACAAGTT
TAAATGAAGAGAGAGAGCCGCGATTTGTTCGCCGTAGCTCTCCTGTTCCT
TATAATTCGTCACGTGATAAAAACGGCAATTTCCGCTCGCTGGTGTGTGT
CTTATGTGCGATTAAGAAACGGTGGAAATTAAAGGCACGGAGTGCGTCTG
CCTGTGAGTGCATACACTTTCCCGGTTTTTCCGCTGCATACGCGCGACAG
CAGCAGATCCATCACCGCCACCAGCACGATAGTGGGAAAGATGCAATTGA
CCGTTCAATATACCCTTCAAGAAAGTGCTCTTAAAATTCTGAGGAGGATA
GTAAAACATGCTCAGCCTGGCCACCATGTCATGATAAAATATTGAAAACA
AAAAATAAGCTGTAAACAAATATGAATGGGCTGAAAATGATATAATTTTG
GTCACCAGGATTTG
back to top

protein sequence of NO16G02080.1

>NO16G02080.1-protein ID=NO16G02080.1-protein|Name=NO16G02080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=398bp
MAWTRPSTTSGSILRHHRCPVLALLLCLYAVVIDSFMVPAHTKASSSRRS
RVAGAAPTSRLIRGSTVQAREPKVSTSTSTSTTPTSNPPNTPSAAQPPVV
APVVPQEALLPASFFQSLPWSRSINGDGAETLLYMPFLEAQMRHLEVHGG
FVRELPVPESVSYTRAAKKASHMASFCVETEDFRKIRFTYMDGGKGLQVF
NSVWYPRFDTDAPILGIDLLLFGGHKMLAVVDFQPLSQEEEYKERFISQL
GPIKAKYPALSESMSNRYYEDTRWFSEHMLFGRLQETSQVESTLFPAFNE
YIAVYSDTVKRSRGSVKDEEKVLARHRAYDEYQLVHDPAHGLFTGYFGPK
FAHDMLTFQFDLADPALLQQQKKKAGMGGGGGAGGNPHGQGGGNPHA*
back to top

mRNA from alignment at chr16:610259..613096+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G02080.1 ID=NO16G02080.1|Name=NO16G02080.1|organism=Nannochloropsis oceanica|type=mRNA|length=2838bp|location=Sequence derived from alignment at chr16:610259..613096+ (Nannochloropsis oceanica)
ATTTTCTTTGACGCTTCGGTTCATGTGACAATTAAAAACTGTGGCTCTTT
CGACTACTTTGCGCTGTCGGACACTCGTAGAGACCAAAACAGACTGCAGA
CCAAAACTGTCGGCAAGCTGAAGCATATCCAGTCGAGTTGAAGGCAAATA
AATGGAATTGATGCTTTAAGCCTCCGTTGCCCCTGGAATCCAATCGAGGA
GACCCAGGGCGTCCCAGAGTCAGAGGCGATGTGCAGCCGGTAAAGAGTAC
CGGCAGGGCTGCCGCTCTTCAGGCTGTATGGTCACTCTGATTGATCTCGT
CTACTGTATCACCAAACGCCCTGGACTCTTCTCACGCACCCGTCTTTGAC
CTCTCTCCACCAAACAAAACAGGTGGCGCAAAGAGCTCGCTTGTAGCAGC
TAGCCGTCCTTGTTCCCTTTCATCTGGGTCGCGACAGCCCGACATCCAAC
CACCAAGCCATGTCCTGCAGTCTGTAACAATACAAACACACACCACACGT
CTACCTCGCCCGCCTGCCGATCAGCTCATACCCTCTGTCTGGCAAAAACT
TCAGAAAGGTCCAACAACCCTCCGCACGACTTCACACAAGCAATTATGGC
TTGGACCAGACCCTCCACCACCAGCGGCAGTATCCTCCGTCACCACCGGT
GCCCGGTGCTAGCTCTGCTACTATGCCTCTATGCGGTTGTCATCGACTCT
TTCATGGTGCCTGCCCACACCAAGGCTTCATCAAGCCGGAGATCAAGAGT
CGCTGGCGCAGCGCCCACCTCGCGGCTAATTCGTGGATCAACGGTACGTC
GGTTTTGCGAATGCCCTTCTGGTTCACGTCTTGGGAACGAGGGAAAGGGA
GGAGACAAGGTTACTCACACTCATTGAGCAGCGTCCCTTCCCTCCTTCCC
TTGCCTCGCTCCCTCCGGCTTTCTGGATACCCACTCTGCTCCATTACCGC
CTGTCACCCTCTCCCGTCAGATCCTTTCACTCACTTATTCAAATGGAGAC
CAACAGAGTGGAATGCCTGACACTTCCCTTCTTCTCCCCACATGCACATG
AACACTCAGGTGCAAGCCCGTGAGCCCAAGGTGAGCACCAGCACCAGCAC
CAGCACTACTCCTACGAGCAACCCTCCTAACACCCCTTCCGCCGCTCAAC
CCCCCGTGGTCGCCCCCGTTGTTCCTCAAGAAGCCTTGCTACCGGCATCC
TTTTTCCAATCATTGCCTTGGTCTCGCTCTATCAACGGCGATGGTGCTGA
GACATTGTTGTACATGCCTTTCTTGGAGGCGCAGATGCGACATCTCGAGG
TCCATGGTGGCTTTGTCCGCGAGCTGCCGGTGCCTGAGTCTGTCTCTTAC
ACACGAGCTGCGAAAAAGGCGTCGCATATGGGTAAGAAATGAGAAAGGAT
GAAGGGGCCGAGGGAGGAGAAATGGAAGGAAATAAAGAGGGCATAAAAAA
GCGCACGCTTTCTTTTCCATCTGCATTTTCGACACTCCCTCACCCTTCTC
TCTTTCTCCCTCCCTCCCTCACTCCCTCCCTTCGCACAGCGAGCTTCTGC
GTGGAGACTGAAGACTTCAGAAAGATCCGCTTCACCTACATGGACGGAGG
GAAGGGCCTGCAGGTTTTCAACTCTGTGTGGTATCCGCGCTTCGACACGG
ACGCTCCCATACTGGGCATCGACTTGTTGTTGTTCGGAGGGCACAAGATG
TTGGCCGTGGTGGACTTCCAGCCCTTATCCCAGGAGGAGGAGTACAAGGA
GAGGTTCATTTCCCAGCTGGGTCCGATCAAGGCCAAGTATCCGGCATTGA
GTGAGTCGATGAGCAACCGGTATTACGAGGACACACGGTGGTTCTCGGAG
CATATGCTTTTTGGGCGGTTGCAGGAGACGAGCCAAGTGGAGAGCACGTT
ATTCCCTGCGTTCAATGAGTACATTGCTGTGTATTCGGACACGGTCAAGA
GGTCGAGGGGGTCGGTGAAGGACGAGGAGAAGGTCTTGGCCAGGCATCGG
GCTTATGACGAGTACCAGCTAGTCCATGACCCGGCCCACGGGTTGTTCAC
TGGCTACTTCGGTCCCAAATTCGCGCATGACATGCTGACGTTCCAGTTCG
ACCTAGCGGACCCGGCGTTGTTGCAGCAACAAAAGAAGAAGGCTGGCATG
GGAGGAGGAGGAGGTGCAGGAGGAAATCCGCATGGGCAGGGAGGAGGTAA
CCCGCATGCGTAGCAGCAGCAGGAGGGGAAAATTGAGGGCGGTGTGTCGT
CAACATCTGTGGCGCAATGACGAAAAACGGCGGCGGTGGGGTGAATAGAG
TAGATGAAGGGCCATTGTGAAGACTGATAACGCGTGTGAAACAAGAGAAG
AAAGAGATAGGAACAGACAGAGGATCGGGCAATCGGCTTTGGGGCGCCTA
CTAGGCGTGTGTGTGACACAAGTTTAAATGAAGAGAGAGAGCCGCGATTT
GTTCGCCGTAGCTCTCCTGTTCCTTATAATTCGTCACGTGATAAAAACGG
CAATTTCCGCTCGCTGGTGTGTGTCTTATGTGCGATTAAGAAACGGTGGA
AATTAAAGGCACGGAGTGCGTCTGCCTGTGAGTGCATACACTTTCCCGGT
TTTTCCGCTGCATACGCGCGACAGCAGCAGATCCATCACCGCCACCAGCA
CGATAGTGGGAAAGATGCAATTGACCGTTCAATATACCCTTCAAGAAAGT
GCTCTTAAAATTCTGAGGAGGATAGTAAAACATGCTCAGCCTGGCCACCA
TGTCATGATAAAATATTGAAAACAAAAAATAAGCTGTAAACAAATATGAA
TGGGCTGAAAATGATATAATTTTGGTCACCAGGATTTG
back to top

Coding sequence (CDS) from alignment at chr16:610259..613096+

>NO16G02080.1 ID=NO16G02080.1|Name=NO16G02080.1|organism=Nannochloropsis oceanica|type=CDS|length=1194bp|location=Sequence derived from alignment at chr16:610259..613096+ (Nannochloropsis oceanica)
ATGGCTTGGACCAGACCCTCCACCACCAGCGGCAGTATCCTCCGTCACCA
CCGGTGCCCGGTGCTAGCTCTGCTACTATGCCTCTATGCGGTTGTCATCG
ACTCTTTCATGGTGCCTGCCCACACCAAGGCTTCATCAAGCCGGAGATCA
AGAGTCGCTGGCGCAGCGCCCACCTCGCGGCTAATTCGTGGATCAACGGT
GCAAGCCCGTGAGCCCAAGGTGAGCACCAGCACCAGCACCAGCACTACTC
CTACGAGCAACCCTCCTAACACCCCTTCCGCCGCTCAACCCCCCGTGGTC
GCCCCCGTTGTTCCTCAAGAAGCCTTGCTACCGGCATCCTTTTTCCAATC
ATTGCCTTGGTCTCGCTCTATCAACGGCGATGGTGCTGAGACATTGTTGT
ACATGCCTTTCTTGGAGGCGCAGATGCGACATCTCGAGGTCCATGGTGGC
TTTGTCCGCGAGCTGCCGGTGCCTGAGTCTGTCTCTTACACACGAGCTGC
GAAAAAGGCGTCGCATATGGCGAGCTTCTGCGTGGAGACTGAAGACTTCA
GAAAGATCCGCTTCACCTACATGGACGGAGGGAAGGGCCTGCAGGTTTTC
AACTCTGTGTGGTATCCGCGCTTCGACACGGACGCTCCCATACTGGGCAT
CGACTTGTTGTTGTTCGGAGGGCACAAGATGTTGGCCGTGGTGGACTTCC
AGCCCTTATCCCAGGAGGAGGAGTACAAGGAGAGGTTCATTTCCCAGCTG
GGTCCGATCAAGGCCAAGTATCCGGCATTGAGTGAGTCGATGAGCAACCG
GTATTACGAGGACACACGGTGGTTCTCGGAGCATATGCTTTTTGGGCGGT
TGCAGGAGACGAGCCAAGTGGAGAGCACGTTATTCCCTGCGTTCAATGAG
TACATTGCTGTGTATTCGGACACGGTCAAGAGGTCGAGGGGGTCGGTGAA
GGACGAGGAGAAGGTCTTGGCCAGGCATCGGGCTTATGACGAGTACCAGC
TAGTCCATGACCCGGCCCACGGGTTGTTCACTGGCTACTTCGGTCCCAAA
TTCGCGCATGACATGCTGACGTTCCAGTTCGACCTAGCGGACCCGGCGTT
GTTGCAGCAACAAAAGAAGAAGGCTGGCATGGGAGGAGGAGGAGGTGCAG
GAGGAAATCCGCATGGGCAGGGAGGAGGTAACCCGCATGCGTAG
back to top
Synonyms
Publications