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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr15 | genome | chr15:535615..537256 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO15G01910.1 vs.
Match: EWM22411.1 (4-phosphopantetheinyl transferase entd [Nannochloropsis gaditana]) HSP 1 Score: 331.6 bits (849), Expect = 3.200e-87 Identity = 214/401 (53.37%), Postives = 262/401 (65.34%), Query Frame = 0
Query: 1 MTPVVLRPPASLVVMVLY------SVVAAGRTWSYHQASCAVFSSRRALQTAAFI-CGTRSAPSSVRRREQQPWHASLPFSSSSHSSS--SSIPLRSTSTSTIQSAAI---------LKAEQLFPTSFEMDIPPMGHVLGLRLPLPSSSSATNHHDTPHSSDDTELDLSLLVDGK----------KESDLLHPKELQLALEMSNIEARLAFVGGRLALRRNLRSLPRPASIEQAVLREEGGAPSLPPHVQASISHKKDLAVCLLRGVREEEEGEKIASSHIGVDVEVCEPRTRTSSIATRVLTLKERNGLGALKSVGISAESEILLRFSFKESVYKAIHPFVRRYVAFHEAEVTPRVDGTCAIVLLLTGGEEEEGGFEVKGEWRRVEGGRFFLTAVAVTKV 374
MTP + RPP +L V+VL S+V A +WS + Q AAF+ C +R S R +QP +S F+S + S S++P S +T+ S + L AEQLFPTSFE+D+PPMGHVL LRLP+ S S D E DLS+L+D K LLHPKEL LA+ MSN+++RLAF+GGRLALRR+LR LP+P IEQAVLR+E GAP+LP HVQASISHK+DLA+CLLR V EE A S+IGVD+E+C+PR T+SIATRVLT +E++ LG L S+GIS ESE+LLRFS KESVYKAI+PF+RRYVAF EAEVTP VDGT IVL L GG EG FE +G WR+V+ GRFFLTAV V KV
Sbjct: 1 MTPALRRPPPTLSVIVLLLHMGLISMVKARGSWSRSLTARVEVKEAFRDQNAAFVDCHSRVRLS---RPTRQPGASSYYFTSVTSKSMYPSTVPPCSICLNTVVSTSRASDICFDGRLTAEQLFPTSFELDMPPMGHVLALRLPVSSVSQ----------DPDREWDLSILLDSSTMDTVSRSAAKFPTLLHPKELDLAMNMSNLDSRLAFLGGRLALRRSLRKLPQPIRIEQAVLRDEKGAPALPSHVQASISHKQDLAICLLRSV---EEDPNRALSNIGVDIEICQPRPSTNSIATRVLTRREQDELGGLASLGISGESELLLRFSLKESVYKAIYPFLRRYVAFQEAEVTPHVDGTSTIVLFLKGG-AAEGLFEAEGHWRQVDNGRFFLTAVWVRKV 384
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO15G01910.1 ID=NO15G01910.1|Name=NO15G01910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1474bp ACAGACACACCTCATATAGACAGCCGCCTCCGGCAGCAGCACGACGGCCG CGACAACAATAGAGGCGTGCCCACCAAGGCGCCGAGGACTTGAAGTGGTC CCTGTGGCCAAGCTTCAATGACACCCGTCGTCCTGCGACCTCCTGCCTCC CTAGTCGTTATGGTCCTCTATTCAGTGGTCGCCGCCGGCAGGACGTGGTC GTACCACCAAGCTTCATGCGCCGTATTCTCCAGTAGGAGAGCACTCCAGA CAGCCGCCTTCATCTGTGGCACCCGCAGCGCACCATCATCGGTCCGACGA CGGGAGCAACAACCATGGCATGCGTCTCTCCCCTTCTCTTCTTCCTCCCA CTCCTCCTCCTCCTCCATTCCACTACGATCGACCAGCACGAGCACCATCC AGTCAGCAGCCATCCTAAAAGCAGAGCAGCTCTTCCCCACCTCCTTCGAA ATGGACATCCCACCCATGGGGCACGTATTGGGTTTGCGCCTCCCCCTCCC TTCTTCCTCCTCCGCCACCAATCACCATGACACCCCTCATTCCTCTGATG ATACCGAACTCGACCTCTCTCTTCTCGTGGACGGCAAAAAAGAGTCAGAT CTTTTACATCCCAAAGAGCTGCAGCTGGCACTAGAAATGAGCAACATTGA GGCACGTCTCGCCTTTGTTGGTGGACGATTAGCCCTCCGCCGAAACCTCC GCTCACTTCCACGTCCCGCGAGCATTGAGCAGGCGGTGTTGCGTGAAGAG GGTGGAGCACCTTCTTTGCCCCCGCATGTACAGGCCTCTATAAGTCATAA GAAGGATTTGGCCGTATGCCTCTTGAGGGGGGTGAGGGAGGAGGAGGAGG GAGAGAAGATTGCTTCCTCTCACATCGGGGTGGATGTGGAGGTGTGTGAG CCGCGGACAAGAACTAGTAGTATCGCCACGCGTGTGCTGACATTGAAAGA GAGGAATGGTTTGGGGGCATTGAAATCTGTGGGAATAAGCGCTGAGAGTG AGATTTTGTTGAGGTTTTCCTTCAAGGAAAGTGTGTACAAAGCGATACAC CCTTTTGTCCGCCGCTACGTGGCGTTTCACGAGGCGGAGGTCACGCCACG GGTTGATGGGACGTGTGCGATTGTGTTGTTGTTGACGGGCGGAGAGGAGG AGGAGGGTGGATTTGAAGTGAAGGGGGAGTGGAGGAGGGTGGAAGGGGGA AGGTTCTTTTTGACGGCGGTGGCGGTGACGAAGGTGAGGGAGGGGAGGGT GGGTTTGGTGCACTTAAAGTTCTGAGTAGAGCGGAGGGGATAGAGAGGAG GGGATAGAACGGCATGTGTACAAAAATGCGAATTTACATCAGGAGTGACA TATGGACTGCAGATATGACGCTTCTTGAGTATACATAGAAATCTGGAGTC AACAAATGAATAACGTATTTTCTTATTGAAGTTACAGCAAAAGAATTGAA GCGATCAGAAGCCTCTAAGCATGA back to topprotein sequence of NO15G01910.1 >NO15G01910.1-protein ID=NO15G01910.1-protein|Name=NO15G01910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=386bp MTPVVLRPPASLVVMVLYSVVAAGRTWSYHQASCAVFSSRRALQTAAFIC GTRSAPSSVRRREQQPWHASLPFSSSSHSSSSSIPLRSTSTSTIQSAAIL KAEQLFPTSFEMDIPPMGHVLGLRLPLPSSSSATNHHDTPHSSDDTELDL SLLVDGKKESDLLHPKELQLALEMSNIEARLAFVGGRLALRRNLRSLPRP ASIEQAVLREEGGAPSLPPHVQASISHKKDLAVCLLRGVREEEEGEKIAS SHIGVDVEVCEPRTRTSSIATRVLTLKERNGLGALKSVGISAESEILLRF SFKESVYKAIHPFVRRYVAFHEAEVTPRVDGTCAIVLLLTGGEEEEGGFE VKGEWRRVEGGRFFLTAVAVTKVREGRVGLVHLKF* back to topmRNA from alignment at chr15:535615..537256+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO15G01910.1 ID=NO15G01910.1|Name=NO15G01910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1642bp|location=Sequence derived from alignment at chr15:535615..537256+ (Nannochloropsis oceanica) ACAGACACACCTCATATAGACAGCCGCCTCCGGCAGCAGCACGACGGCCG
CGACAACAATAGAGGCGTGCCCACCAAGGCGCCGAGGACTTGAAGTGGTC
CCTGTGGCCAAGCTTCAATGACACCCGTCGTCCTGCGACCTCCTGCCTCC
CTAGTCGTTATGGTACGTGCGGCCCCCCTGGCCCCTGTCCCTTGGGCCTT
TGGCTCATCCTCGACATAATCTCTCATCAGGTCCTCTATTCAGTGGTCGC
CGCCGGCAGGACGTGGTCGTACCACCAAGCTTCATGCGCCGTATTCTCCA
GTAGGAGAGCACTCCAGACAGGTACAATGACGAGAGGGGCGATTAGCGTG
ACGGTTTGACCACTATCTCATCACACCAGACCACCCTCCATCCCACCATC
TCCTTCTCCATCTTAAATAAGCCGCCTTCATCTGTGGCACCCGCAGCGCA
CCATCATCGGTCCGACGACGGGAGCAACAACCATGGCATGCGTCTCTCCC
CTTCTCTTCTTCCTCCCACTCCTCCTCCTCCTCCATTCCACTACGATCGA
CCAGCACGAGCACCATCCAGTCAGCAGCCATCCTAAAAGCAGAGCAGCTC
TTCCCCACCTCCTTCGAAATGGACATCCCACCCATGGGGCACGTATTGGG
TTTGCGCCTCCCCCTCCCTTCTTCCTCCTCCGCCACCAATCACCATGACA
CCCCTCATTCCTCTGATGATACCGAACTCGACCTCTCTCTTCTCGTGGAC
GGCAAAAAAGAGTCAGATCTTTTACATCCCAAAGAGCTGCAGCTGGCACT
AGAAATGAGCAACATTGAGGCACGTCTCGCCTTTGTTGGTGGACGATTAG
CCCTCCGCCGAAACCTCCGCTCACTTCCACGTCCCGCGAGCATTGAGCAG
GCGGTGTTGCGTGAAGAGGGTGGAGCACCTTCTTTGCCCCCGCATGTACA
GGCCTCTATAAGTCATAAGAAGGATTTGGCCGTATGCCTCTTGAGGGGGG
TGAGGGAGGAGGAGGAGGGAGAGAAGATTGCTTCCTCTCACATCGGGGTG
GATGTGGAGGTGTGTGAGCCGCGGACAAGAACTAGTAGTATCGCCACGCG
TGTGCTGACATTGAAAGAGAGGAATGGTTTGGGGGCATTGAAATCTGTGG
GAATAAGCGCTGAGAGTGAGATTTTGTTGAGGTTTTCCTTCAAGGAAAGT
GTGTACAAAGCGATACACCCTTTTGTCCGCCGCTACGTGGCGTTTCACGA
GGCGGAGGTCACGCCACGGGTTGATGGGACGTGTGCGATTGTGTTGTTGT
TGACGGGCGGAGAGGAGGAGGAGGGTGGATTTGAAGTGAAGGGGGAGTGG
AGGAGGGTGGAAGGGGGAAGGTTCTTTTTGACGGCGGTGGCGGTGACGAA
GGTGAGGGAGGGGAGGGTGGGTTTGGTGCACTTAAAGTTCTGAGTAGAGC
GGAGGGGATAGAGAGGAGGGGATAGAACGGCATGTGTACAAAAATGCGAA
TTTACATCAGGAGTGACATATGGACTGCAGATATGACGCTTCTTGAGTAT
ACATAGAAATCTGGAGTCAACAAATGAATAACGTATTTTCTTATTGAAGT
TACAGCAAAAGAATTGAAGCGATCAGAAGCCTCTAAGCATGA back to topCoding sequence (CDS) from alignment at chr15:535615..537256+ >NO15G01910.1 ID=NO15G01910.1|Name=NO15G01910.1|organism=Nannochloropsis oceanica|type=CDS|length=1158bp|location=Sequence derived from alignment at chr15:535615..537256+ (Nannochloropsis oceanica) ATGACACCCGTCGTCCTGCGACCTCCTGCCTCCCTAGTCGTTATGGTCCT CTATTCAGTGGTCGCCGCCGGCAGGACGTGGTCGTACCACCAAGCTTCAT GCGCCGTATTCTCCAGTAGGAGAGCACTCCAGACAGCCGCCTTCATCTGT GGCACCCGCAGCGCACCATCATCGGTCCGACGACGGGAGCAACAACCATG GCATGCGTCTCTCCCCTTCTCTTCTTCCTCCCACTCCTCCTCCTCCTCCA TTCCACTACGATCGACCAGCACGAGCACCATCCAGTCAGCAGCCATCCTA AAAGCAGAGCAGCTCTTCCCCACCTCCTTCGAAATGGACATCCCACCCAT GGGGCACGTATTGGGTTTGCGCCTCCCCCTCCCTTCTTCCTCCTCCGCCA CCAATCACCATGACACCCCTCATTCCTCTGATGATACCGAACTCGACCTC TCTCTTCTCGTGGACGGCAAAAAAGAGTCAGATCTTTTACATCCCAAAGA GCTGCAGCTGGCACTAGAAATGAGCAACATTGAGGCACGTCTCGCCTTTG TTGGTGGACGATTAGCCCTCCGCCGAAACCTCCGCTCACTTCCACGTCCC GCGAGCATTGAGCAGGCGGTGTTGCGTGAAGAGGGTGGAGCACCTTCTTT GCCCCCGCATGTACAGGCCTCTATAAGTCATAAGAAGGATTTGGCCGTAT GCCTCTTGAGGGGGGTGAGGGAGGAGGAGGAGGGAGAGAAGATTGCTTCC TCTCACATCGGGGTGGATGTGGAGGTGTGTGAGCCGCGGACAAGAACTAG TAGTATCGCCACGCGTGTGCTGACATTGAAAGAGAGGAATGGTTTGGGGG CATTGAAATCTGTGGGAATAAGCGCTGAGAGTGAGATTTTGTTGAGGTTT TCCTTCAAGGAAAGTGTGTACAAAGCGATACACCCTTTTGTCCGCCGCTA CGTGGCGTTTCACGAGGCGGAGGTCACGCCACGGGTTGATGGGACGTGTG CGATTGTGTTGTTGTTGACGGGCGGAGAGGAGGAGGAGGGTGGATTTGAA GTGAAGGGGGAGTGGAGGAGGGTGGAAGGGGGAAGGTTCTTTTTGACGGC GGTGGCGGTGACGAAGGTGAGGGAGGGGAGGGTGGGTTTGGTGCACTTAA AGTTCTGA back to top
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