NO14G02980.1, NO14G02980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G02980.1
Unique NameNO14G02980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1831
Alignment locationchr14:878438..881008 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:878438..881008 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G02980.1 vs.
Match: CBN78233.1 (NCAIR mutase (PurE)-related proteins [Ectocarpus siliculosus])

HSP 1 Score: 213.4 bits (542), Expect = 1.400e-51
Identity = 144/359 (40.11%), Postives = 192/359 (53.48%), Query Frame = 0 
Query:   63 SILSRLGQGTLNPSQAEEALLALQQQQQQQQQQQKEDKGYDSVDSFAKIDYVREARTGLPEIIYGEGKTPEQLLAILHSMGERRRAQEEASGDLATTHVNDANPSEGNLVEMRSRVVTGGEGEEGQRAASADTTAPRLSSSSPLHRPAAAAHGVIVASRVSSEKYAALRESMKGEGGREGGRDGGMDAYGTLEYMPVPRLLVL-----RPRGKEGGRDGGREERRTAPSLGLVTVMCAGTADLSVAEEAATVAELCGVEVQRVYDVGVAGIHRLFAALDTIKRSHVVVCVAGMDGALPTVVAGLLPCPVIAVPTSVGYGVGKDGLAPLLTMLNACAPGVACVNIDNGIGAAGMAVKILR 417
            ++L+R+  G L+P+ A   L  L      Q +          V  FAKID+ R  R G PE+++G+GK+ EQ+  IL +M    RA    + + A  H                          G  AA+ D         SP           +VA+RVS EK+  + +++ G+                L Y    R++       R R    G  GG     T+ S+G V V+ AGT+DL+VAEEAA +AEL G EV R +DVGVAGIHRL  A+ +++++ V +CVAGMDGA+P VVAGL+ CPV+AVPTSVGYG    GLAPLLTMLNACAPGV+ VNIDNG GAA  AVK+L+
Sbjct:   22 ALLARVAAGDLSPATAASQLAPLLVSGGAQAED---------VGGFAKIDHDRRRRVGFPEVVFGDGKSAEQITDILAAMIREARAGSRVAAEAAAVH-----------------------AAAGNAAAADDDGDATGGGGSP-----------VVATRVSPEKWLVISDALPGQ----------------LTYHADARIVSFGEPPQRRRAAGDGAPGG--SIATSISIGTVAVLSAGTSDLAVAEEAAVLAELAGAEVSRFHDVGVAGIHRLLGAIPSVQKAGVAICVAGMDGAMPGVVAGLVKCPVVAVPTSVGYGAAMSGLAPLLTMLNACAPGVSVVNIDNGFGAAAFAVKLLK 319
The following BLAST results are available for this feature:
BLAST of NO14G02980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN78233.11.400e-5140.11NCAIR mutase (PurE)-related proteins [Ectocarpus s... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02980NO14G02980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G02980.1NO14G02980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G02980.1.cds1NO14G02980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02980.1.cds2NO14G02980.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02980.1.cds3NO14G02980.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02980.1.cds4NO14G02980.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02980.1.cds5NO14G02980.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G02980.1 ID=NO14G02980.1|Name=NO14G02980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1831bp
GATGGTGGGTGAGGAGGTCGGGTTATTCATCCCTGCATTTTTTTAATCCG
CTAAGCTTGGCTTGGCCATGCCAAACCCTACGAACCAACACACAGCAGGG
CCAGGAGACGAAGGAAAACTGGGTGTGCTATCTTCCACCGTAGCCGCTAA
GCCACGCCATGCCACCCTTCCGCCGAATGCTCCTCCTCCCTCGTTACCCC
GGGCCTGGCCACCTCCCCACCCCCCTCCCCTCCTGCCTTTTATCCTCTCT
ATCCTCTCTCTACGCCTCTCCCCCTTCCCTCCGCAGCAGTAAATGTCCCT
TTTCTTTCTCTTCATTTTCTTTCACCCCCACTTCAAGCATCCGCTCCATC
CTCTCTCGCCTCGGCCAGGGAACACTCAACCCTTCTCAAGCCGAGGAGGC
ATTGCTGGCCCTGCAGCAGCAGCAACAGCAGCAGCAACAGCAGCAAAAGG
AAGATAAGGGATACGATAGCGTGGACAGCTTTGCCAAGATTGATTACGTG
CGGGAGGCTCGGACTGGACTGCCGGAGATCATATACGGTGAAGGGAAGAC
CCCGGAGCAGCTCCTTGCCATCCTACACAGCATGGGCGAACGCCGCCGAG
CTCAAGAGGAGGCATCAGGAGACCTAGCGACTACACATGTCAATGATGCG
AACCCATCGGAGGGAAACCTGGTGGAAATGCGGTCGCGAGTCGTAACGGG
AGGAGAAGGAGAGGAAGGACAAAGAGCAGCATCAGCAGATACAACAGCAC
CGCGATTATCTTCCTCGTCTCCACTGCATCGGCCAGCAGCAGCAGCACAC
GGCGTGATCGTCGCCTCGCGGGTGTCCTCGGAAAAATACGCAGCCCTCAG
GGAATCAATGAAGGGGGAGGGAGGGAGGGAGGGAGGGAGGGACGGGGGGA
TGGACGCATATGGAACGTTAGAATACATGCCAGTGCCGCGACTGCTGGTG
TTGAGGCCGCGGGGGAAGGAGGGAGGGAGGGACGGAGGGAGGGAGGAAAG
AAGGACAGCGCCGTCGTTAGGCCTCGTTACTGTCATGTGCGCGGGGACGG
CTGACTTGTCTGTCGCAGAGGAGGCTGCCACGGTGGCAGAATTGTGTGGG
GTCGAGGTTCAGCGAGTGTACGATGTGGGTGTTGCGGGCATTCATCGACT
TTTTGCTGCCCTGGACACGATTAAGAGGTCGCACGTGGTGGTGTGCGTAG
CAGGGATGGACGGGGCCTTGCCGACCGTGGTTGCCGGCCTCCTCCCCTGC
CCCGTCATCGCGGTGCCGACCAGCGTGGGTTATGGGGTAGGGAAGGACGG
TCTTGCCCCCCTCCTCACTATGCTGAATGCCTGTGCTCCCGGCGTTGCCT
GTGTGAACATCGACAATGGGATTGGGGCCGCGGGGATGGCGGTGAAGATC
CTGCGGGTGAGACACAGAGGGTGAGAAGATGGAAGGAGCATCCCTCCCTC
CCTCCCTCCCTCTCTTCCTCTGACGGGGACGAGTTCATGCGCCCCCTTGG
TGTAGCGGTATGCGTGGATGCATATGAGCTACCTGTATGCAAATATATGG
GGCCTGTGGCTAATTGTTTGTATTATAGAACAAGTGTTTAAATTTAAAAT
CAAATAATCGAAATGAAACGCCATGAAACGAATGAAACCACTCGTGTCAG
CACACAGGGAACCAATCAACATAATAACAAGGCGGTATCTGTGTCAAGCT
CACCAAGCACAGGAGGTCGTTCGAAGGAGACTTTGCTAAACAAACATACC
TAGAAATAAAGCCAATTCCTCTGAGAAGAAGCTGTTCTTTCCAAAAGGGT
GGGAGGAAAAGTAATCACATCTTATCAAATA
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protein sequence of NO14G02980.1

>NO14G02980.1-protein ID=NO14G02980.1-protein|Name=NO14G02980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=422bp
MPPFRRMLLLPRYPGPGHLPTPLPSCLLSSLSSLYASPPSLRSSKCPFSF
SSFSFTPTSSIRSILSRLGQGTLNPSQAEEALLALQQQQQQQQQQQKEDK
GYDSVDSFAKIDYVREARTGLPEIIYGEGKTPEQLLAILHSMGERRRAQE
EASGDLATTHVNDANPSEGNLVEMRSRVVTGGEGEEGQRAASADTTAPRL
SSSSPLHRPAAAAHGVIVASRVSSEKYAALRESMKGEGGREGGRDGGMDA
YGTLEYMPVPRLLVLRPRGKEGGRDGGREERRTAPSLGLVTVMCAGTADL
SVAEEAATVAELCGVEVQRVYDVGVAGIHRLFAALDTIKRSHVVVCVAGM
DGALPTVVAGLLPCPVIAVPTSVGYGVGKDGLAPLLTMLNACAPGVACVN
IDNGIGAAGMAVKILRVRHRG*
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mRNA from alignment at chr14:878438..881008-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G02980.1 ID=NO14G02980.1|Name=NO14G02980.1|organism=Nannochloropsis oceanica|type=mRNA|length=2571bp|location=Sequence derived from alignment at chr14:878438..881008- (Nannochloropsis oceanica)
GATGGTGGGTGAGGAGGTCGGGTTATTCATCCCTGCATTTTTTTAATCCG
CTAAGCTTGGCTTGGCCATGCCAAACCCTACGAACCAACACACAGCAGGG
CCAGGAGACGAAGGAAAACTGGGTGTGCTATCTTCCACCGTAGCCGCTAA
GCCACGCCATGCCACCCTTCCGCCGAATGCTCCTCCTCCCTCGTTACCCC
GGGCCTGGCCACCTCCCCACCCCCCTCCCCTCCTGCCTTTTATCCTCTCT
ATCCTCTCTCTACGCCTCTCCCCCTTCCCTCCGCAGCAGTAAATGTCCCT
TTTCTTTCTCTTCATTTTCTTTCACCCCCACTTCAAGCATCCGCTCCATC
CTCTCTCGCCTCGGCCAGGGAACACTCAACCCTTCTCAAGCCGAGGAGGC
ATTGCTGGCCCTGCAGCAGCAGCAACAGCAGCAGCAACAGCAGCAAAAGG
AAGATAAGGGATACGATAGCGTGGACAGCTTTGCCAAGATTGATTACGTG
CGGGAGGCTCGGACTGGACTGCCGGAGGTACGCTGGGACTTAATGTGGAG
GGAGAGTGGAACAGGGGAGGGAGGGAGGGAGGGAGGGAAGGGGGTAGGAA
TGTGCCACAGTACGACTTGTCAAGGTCAAACAGCCCACGCACAATACAGA
GTTATAGCTCCTTTCTCTCCCTTTCCTCCTCCTCGCCCCTGCATGAAGCA
GAACGACGCATAATTTGTATAGATTGCCCTTGAGCCCGTTCCCCTCATGC
CCACCGCTTCCCCCCCCCTACTCCCCGACCTATCCCACTTCAGATCATAT
ACGGTGAAGGGAAGACCCCGGAGCAGCTCCTTGCCATCCTACACAGCATG
GGCGAACGCCGCCGAGCTCAAGAGGAGGCATCAGGAGACCTAGCGACTAC
ACATGTCAATGATGCGAACCCATCGGAGGGAAACCTGGTGGAAATGCGGT
CGCGAGTCGTAACGGGAGGAGAAGGAGAGGAAGGACAAAGAGCAGCATCA
GCAGATACAACAGCACCGCGATTATCTTCCTCGTCTCCACTGCATCGGCC
AGCAGCAGCAGCACACGGCGTGATCGTCGCCTCGCGGGTGTCCTCGGAAA
AATACGCAGCCCTCAGGGAATCAATGAAGGGGGAGGGAGGGAGGGAGGGA
GGGAGGGACGGGGGGATGGACGCATATGGAACGTTAGAATACATGCCAGT
GCCGCGACTGCTGGTGTTGAGGCCGCGGGGGAAGGAGGGAGGGAGGGACG
GAGGGAGGGAGGAAAGAAGGACAGCGCCGTCGTTAGGTACGTGAAAGGTG
AAGGGGAAAAAAGTGTAGTTAATTTTACTACCTGCCTCTCTTTCTCTGGT
GCCTCATTCCTTAGTCGTTTGTAATAATCAGAAGGGCCTCACCCAATCAC
ACGTCACACGTCCCTCCCTCCCTCCCTCCTATAGGCCTCGTTACTGTCAT
GTGCGCGGGGACGGCTGACTTGTCTGTCGCAGAGGAGGCTGCCACGGTGG
CAGAATTGTGTGGGGTCGAGGTAACAACAAGAGAGAGGGAGGAAATAATG
CAGGGAAGGAGGGAGGAAAGGAGGGAGGGAAGGAGGGAGGGAGGGAGGGA
GGGAGGGGAGGAGTTTGCTTTGATATTATCTAAATCCTTGCCACCTCTTC
CTCCCCTCCCTTCCTTCCCCCCCTCCCTCTCTCCCTCCTTTAGGTTCAGC
GAGTGTACGATGTGGGTGTTGCGGGCATTCATCGACTTTTTGCTGCCCTG
GACACGATTAAGAGGTCGCACGTGGTGGTGTGCGTAGCAGGGATGGACGG
GGCCTTGCCGACCGTGGTTGCCGGTAAGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGCAAGGAGTAGTGAAAAATGATTTCTTT
ACTGGCAATGCCGATGTTTCCGCCCCCTCCCCCTCTTTCTTTCCCCTCCT
TCTTTTTTTCCTCTTCCTCCTTCCAGGCCTCCTCCCCTGCCCCGTCATCG
CGGTGCCGACCAGCGTGGGTTATGGGGTAGGGAAGGACGGTCTTGCCCCC
CTCCTCACTATGCTGAATGCCTGTGCTCCCGGCGTTGCCTGTGTGAACAT
CGACAATGGGATTGGGGCCGCGGGGATGGCGGTGAAGATCCTGCGGGTGA
GACACAGAGGGTGAGAAGATGGAAGGAGCATCCCTCCCTCCCTCCCTCCC
TCTCTTCCTCTGACGGGGACGAGTTCATGCGCCCCCTTGGTGTAGCGGTA
TGCGTGGATGCATATGAGCTACCTGTATGCAAATATATGGGGCCTGTGGC
TAATTGTTTGTATTATAGAACAAGTGTTTAAATTTAAAATCAAATAATCG
AAATGAAACGCCATGAAACGAATGAAACCACTCGTGTCAGCACACAGGGA
ACCAATCAACATAATAACAAGGCGGTATCTGTGTCAAGCTCACCAAGCAC
AGGAGGTCGTTCGAAGGAGACTTTGCTAAACAAACATACCTAGAAATAAA
GCCAATTCCTCTGAGAAGAAGCTGTTCTTTCCAAAAGGGTGGGAGGAAAA
GTAATCACATCTTATCAAATA
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Coding sequence (CDS) from alignment at chr14:878438..881008-

>NO14G02980.1 ID=NO14G02980.1|Name=NO14G02980.1|organism=Nannochloropsis oceanica|type=CDS|length=1266bp|location=Sequence derived from alignment at chr14:878438..881008- (Nannochloropsis oceanica)
ATGCCACCCTTCCGCCGAATGCTCCTCCTCCCTCGTTACCCCGGGCCTGG
CCACCTCCCCACCCCCCTCCCCTCCTGCCTTTTATCCTCTCTATCCTCTC
TCTACGCCTCTCCCCCTTCCCTCCGCAGCAGTAAATGTCCCTTTTCTTTC
TCTTCATTTTCTTTCACCCCCACTTCAAGCATCCGCTCCATCCTCTCTCG
CCTCGGCCAGGGAACACTCAACCCTTCTCAAGCCGAGGAGGCATTGCTGG
CCCTGCAGCAGCAGCAACAGCAGCAGCAACAGCAGCAAAAGGAAGATAAG
GGATACGATAGCGTGGACAGCTTTGCCAAGATTGATTACGTGCGGGAGGC
TCGGACTGGACTGCCGGAGATCATATACGGTGAAGGGAAGACCCCGGAGC
AGCTCCTTGCCATCCTACACAGCATGGGCGAACGCCGCCGAGCTCAAGAG
GAGGCATCAGGAGACCTAGCGACTACACATGTCAATGATGCGAACCCATC
GGAGGGAAACCTGGTGGAAATGCGGTCGCGAGTCGTAACGGGAGGAGAAG
GAGAGGAAGGACAAAGAGCAGCATCAGCAGATACAACAGCACCGCGATTA
TCTTCCTCGTCTCCACTGCATCGGCCAGCAGCAGCAGCACACGGCGTGAT
CGTCGCCTCGCGGGTGTCCTCGGAAAAATACGCAGCCCTCAGGGAATCAA
TGAAGGGGGAGGGAGGGAGGGAGGGAGGGAGGGACGGGGGGATGGACGCA
TATGGAACGTTAGAATACATGCCAGTGCCGCGACTGCTGGTGTTGAGGCC
GCGGGGGAAGGAGGGAGGGAGGGACGGAGGGAGGGAGGAAAGAAGGACAG
CGCCGTCGTTAGGCCTCGTTACTGTCATGTGCGCGGGGACGGCTGACTTG
TCTGTCGCAGAGGAGGCTGCCACGGTGGCAGAATTGTGTGGGGTCGAGGT
TCAGCGAGTGTACGATGTGGGTGTTGCGGGCATTCATCGACTTTTTGCTG
CCCTGGACACGATTAAGAGGTCGCACGTGGTGGTGTGCGTAGCAGGGATG
GACGGGGCCTTGCCGACCGTGGTTGCCGGCCTCCTCCCCTGCCCCGTCAT
CGCGGTGCCGACCAGCGTGGGTTATGGGGTAGGGAAGGACGGTCTTGCCC
CCCTCCTCACTATGCTGAATGCCTGTGCTCCCGGCGTTGCCTGTGTGAAC
ATCGACAATGGGATTGGGGCCGCGGGGATGGCGGTGAAGATCCTGCGGGT
GAGACACAGAGGGTGA
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Synonyms
Publications