NO13G01700.1, NO13G01700.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01700.1
Unique NameNO13G01700.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1836
Alignment locationchr13:503235..505699 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:503235..505699 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO13G01700.1 vs.
Match: EWM21833.1 (GTP-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 856.7 bits (2212), Expect = 4.100e-245
Identity = 429/545 (78.72%), Postives = 478/545 (87.71%), Query Frame = 0 
Query:   13 VVVLLVVGMVGLVSAAGPLEVIDAMGKLKGKEEVKQFVQKRLKATERAGPVIVGSAGSKGSGKSTLLNKLFDTDFGVGRSLGPAARPQGGVALCAAGDGVLMCVDYDAVGTGAEEATTNGKILALTTRLADVIVLNLWSSDVGRNVPYNTLALQAIFQEQLQAEGSPKTLLLVAVHDHAGHQQDERTREAILQDLDSIWAGVPKSEDKAYAELSELFDMEIAFLPHPRYRPEEYESAIEDLRNRFLDLDLLSARYSKRVDRESFPSTLSVLWNEIKGRDFVVLPSRGELLATHQIETQFSSALATVESKLSSWRAAVERGRVVSGFGEVGEKLYASVLENFDGATQPFAVSPLRVRKHKELQSLLTRGISDLVRRQLANLQQQGLKKFKGMLMGYVGKEEREDLENDAQRGLEEWFAEGAAKVVVPGVVGAGSYEKALSEFVDLLTEYAAKWPQSPAYNVQAMKQLEGGAKKKKGKASWGATFQLVSLLRTPGDGALQGFATYQAGPVQFLCGLQNDRDLPESRLEGKVPPLLRIQPKVAFDVDL 558
            + ++L    V + SAAGPLEVIDA GKLK KEEV +FVQKRLKATERAG VIVGSAGSKGSGKSTLLNKLFDTDFG+GR+LGP ARPQGGVALCAAG G L+CVDYDAVGTG EEA TNGK LALTT+LAD I+LNLWSSDVGRNVPYN+LALQAIFQEQL AEGSPKTLLLV VHDH   +  +RT+EA+L+ L+++WA +P++E+KA AEL++ FD+E+AFLPHPRYRPEEYE A+E LRNRFLDLDLLSAR+SKRVDRE+FP+TL+  WNEIK RDFVVLPS+GELLATHQIE Q   ALATVE KL  WRA  ERGRVV GFGE+  KLY S LE FD ATQPFA SPLRVRKHKEL+ +L RG++DLVR+QL NLQ QGLK+FK  L+ +VGKE+REDLEN+AQRG+EEWFAE A KVVVP V GAGSYEKALS+FV+ LT+YA KWPQSPAYNVQAMK+LE GAKKKKGKASWGATFQLVSLLRTPGDGALQGFATYQAGPVQFL GLQNDRDLPESRLEGK PPLLRIQPKVAFDVDL
Sbjct:   44 LALVLSAWAVQMASAAGPLEVIDAAGKLKAKEEVNRFVQKRLKATERAGLVIVGSAGSKGSGKSTLLNKLFDTDFGIGRALGPHARPQGGVALCAAGGGGLVCVDYDAVGTGTEEAGTNGKFLALTTKLADAILLNLWSSDVGRNVPYNSLALQAIFQEQLHAEGSPKTLLLVVVHDHPEEEAGDRTKEAVLEVLETVWASLPRTEEKADAELTDFFDVEMAFLPHPRYRPEEYERALEGLRNRFLDLDLLSARHSKRVDRETFPATLAAFWNEIKARDFVVLPSQGELLATHQIELQHGKALATVEGKLGMWRATSERGRVVGGFGEIAAKLYTSALEEFDRATQPFAASPLRVRKHKELEGVLARGVNDLVRKQLGNLQAQGLKRFKAALLQFVGKEDREDLENEAQRGMEEWFAENAEKVVVPVVAGAGSYEKALSDFVNQLTDYAHKWPQSPAYNVQAMKKLETGAKKKKGKASWGATFQLVSLLRTPGDGALQGFATYQAGPVQFLMGLQNDRDLPESRLEGKAPPLLRIQPKVAFDVDL 588
The following BLAST results are available for this feature:
BLAST of NO13G01700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21833.14.100e-24578.72GTP-binding protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01700NO13G01700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01700.1NO13G01700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01700.1.cds1NO13G01700.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01700.1.cds2NO13G01700.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01700.1.cds3NO13G01700.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01700.1.cds4NO13G01700.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01700.1 ID=NO13G01700.1|Name=NO13G01700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1836bp
CACAGGGTCGGTTGGGCTGGCCTTGGACGACGACATACGGACAAACGACC
GGCTGCACCTAGAGGCTGCGTAACCATCATCTGAAGCAACAAGTAGCAAG
CACTAAGTGGGATAGCAGGCAACACACGCAGATACAGAGCGCTAGCATGA
GTCAACCACAAAAAGGAGGGCTATTGTGGCCCGTGGTGGTGTTGTTGGTG
GTGGGGATGGTGGGGCTAGTGAGCGCAGCGGGGCCGTTAGAAGTAATCGA
TGCGATGGGCAAACTCAAGGGCAAAGAGGAGGTGAAACAGTTCGTGCAAA
AGCGACTTAAGGCCACAGAGCGAGCCGGCCCGGTCATTGTCGGCAGTGCG
GGGAGCAAAGGCTCGGGAAAAAGCACCCTGCTCAACAAGCTCTTTGATAC
TGATTTCGGAGTCGGTCGCTCTCTTGGTCCCGCCGCCCGGCCACAGGGAG
GGGTGGCTTTATGCGCTGCGGGTGATGGGGTATTAATGTGTGTCGATTAT
GATGCGGTAGGCACGGGCGCGGAGGAGGCCACGACGAATGGCAAGATTCT
GGCCTTGACGACGAGGCTCGCTGATGTGATTGTGCTGAATTTGTGGAGTT
CGGATGTAGGGCGGAATGTGCCGTATAACACGCTGGCGTTGCAGGCTATC
TTCCAAGAGCAACTCCAAGCCGAAGGTTCGCCCAAGACCCTTCTCCTCGT
CGCTGTGCACGACCATGCGGGGCATCAACAGGATGAAAGGACTCGGGAGG
CGATTTTGCAGGATCTTGACTCGATTTGGGCTGGAGTTCCCAAGAGTGAG
GACAAGGCATATGCAGAGCTAAGTGAGCTCTTCGATATGGAGATTGCTTT
CTTGCCTCACCCGCGTTACAGACCCGAGGAATACGAGAGTGCCATTGAAG
ACCTGCGCAACCGTTTCTTGGACTTGGACCTCCTGTCCGCCCGTTACTCC
AAGCGCGTAGACCGAGAAAGCTTTCCCTCAACCCTTTCGGTACTTTGGAA
CGAGATCAAGGGGAGGGATTTCGTGGTCCTGCCTTCCCGAGGTGAGCTTC
TGGCAACCCACCAAATCGAGACTCAGTTTTCCTCTGCTTTGGCCACCGTA
GAGAGCAAGCTGTCCTCATGGCGGGCAGCGGTGGAGAGGGGAAGGGTGGT
GAGTGGCTTTGGAGAGGTGGGAGAGAAGCTGTACGCGAGTGTGCTCGAGA
ACTTTGATGGGGCCACACAGCCTTTTGCTGTTTCCCCTCTAAGGGTGAGG
AAGCACAAGGAGCTGCAGTCATTGTTGACGAGGGGGATTAGTGACTTGGT
GCGGCGACAGCTGGCGAATTTGCAGCAGCAGGGGCTGAAGAAATTCAAGG
GGATGTTGATGGGGTATGTGGGGAAAGAGGAGCGGGAGGATTTGGAGAAT
GACGCGCAACGGGGGTTGGAAGAGTGGTTTGCAGAGGGGGCGGCGAAGGT
GGTTGTCCCGGGCGTTGTGGGCGCGGGGAGCTATGAGAAGGCACTGTCGG
AGTTTGTGGATCTATTGACGGAGTATGCCGCTAAATGGCCACAATCGCCG
GCATACAACGTCCAGGCCATGAAACAATTGGAGGGTGGGGCCAAGAAAAA
GAAAGGGAAGGCGTCGTGGGGTGCCACGTTTCAGCTCGTGTCATTGTTAA
GGACCCCGGGGGATGGGGCTCTGCAAGGATTTGCGACCTACCAGGCCGGA
CCGGTTCAATTTTTGTGTGGGTTGCAGAATGATCGGGATTTGCCAGAGTC
AAGGTTGGAAGGGAAGGTGCCGCCACTGCTGAGGATTCAGCCCAAGGTGG
CGTTTGATGTGGATTTGTAAGGCGGGGGGGGGGGGG
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protein sequence of NO13G01700.1

>NO13G01700.1-protein ID=NO13G01700.1-protein|Name=NO13G01700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=558bp
MSQPQKGGLLWPVVVLLVVGMVGLVSAAGPLEVIDAMGKLKGKEEVKQFV
QKRLKATERAGPVIVGSAGSKGSGKSTLLNKLFDTDFGVGRSLGPAARPQ
GGVALCAAGDGVLMCVDYDAVGTGAEEATTNGKILALTTRLADVIVLNLW
SSDVGRNVPYNTLALQAIFQEQLQAEGSPKTLLLVAVHDHAGHQQDERTR
EAILQDLDSIWAGVPKSEDKAYAELSELFDMEIAFLPHPRYRPEEYESAI
EDLRNRFLDLDLLSARYSKRVDRESFPSTLSVLWNEIKGRDFVVLPSRGE
LLATHQIETQFSSALATVESKLSSWRAAVERGRVVSGFGEVGEKLYASVL
ENFDGATQPFAVSPLRVRKHKELQSLLTRGISDLVRRQLANLQQQGLKKF
KGMLMGYVGKEEREDLENDAQRGLEEWFAEGAAKVVVPGVVGAGSYEKAL
SEFVDLLTEYAAKWPQSPAYNVQAMKQLEGGAKKKKGKASWGATFQLVSL
LRTPGDGALQGFATYQAGPVQFLCGLQNDRDLPESRLEGKVPPLLRIQPK
VAFDVDL*
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mRNA from alignment at chr13:503235..505699-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01700.1 ID=NO13G01700.1|Name=NO13G01700.1|organism=Nannochloropsis oceanica|type=mRNA|length=2465bp|location=Sequence derived from alignment at chr13:503235..505699- (Nannochloropsis oceanica)
CACAGGGTCGGTTGGGCTGGCCTTGGACGACGACATACGGACAAACGACC
GGCTGCACCTAGAGGCTGCGTAACCATCATCTGAAGCAACAAGTAGCAAG
CACTAAGTGGGATAGCAGGCAACACACGCAGATACAGAGCGCTAGCATGA
GTCAACCACAAAAAGGAGGGCTATTGTGGCCCGTGGTGGTGTTGTTGGTG
GTGGGGATGGTGGGGCTAGTGAGCGCAGCGGGGCCGTTAGAAGTAATCGA
TGCGATGGGCAAACTCAAGGGCAAAGAGGAGGTGAAACAGTTCGTGCAAA
AGCGACTTAAGGCCACAGAGCGAGGTGAGTGAGACATGATGGTGCTAGGG
TGAGACAGGGGAAGTAGTAGGAGGCGAGGACAGAAACATGAGTGGTGGTG
CATGATGCGCTGATACAGCACCCTTGCTTGGCCTCCTGTGATGGTGCCAT
TTCACCTCTACACACGTGCGACCCACAGCCCGTATTGTCTTTTCATCTGT
TTTGTACAACGCTAGATTGTATGCTTCCTGTCCAGTCTCCCTCCTCCTGT
GTCCTCCAGTTTGCGCACCCATCGATCTCACACGCACCCTCTCGCGCTTT
CTCCCTTCCTCCCCGTTTTGCAGCCGGCCCGGTCATTGTCGGCAGTGCGG
GGAGCAAAGGCTCGGGAAAAAGCACCCTGCTCAACAAGCTCTTTGATACT
GATTTCGGAGTCGGTCGCTCTCTTGGTCCCGCCGCCCGGCCACAGGGAGG
GGTGGCTTTATGCGCTGCGGGTGATGGGGTATTAATGTGTGTCGATTATG
ATGCGGTAGGCACGGGCGCGGAGGAGGCCACGACGAATGGCAAGATTCTG
GCCTTGACGACGAGGCTCGCTGATGTGATTGTGCTGAATTTGTGGAGTTC
GGATGTAGGGCGGAATGTGCCGTATAACACGCTGGCGTTGCAGGTAAAGG
GAGGGGGGGAGATGGGAAAGGTAGAGAGCATACGGGATACACCGATCTCT
TGTGTTTTTTTTTCATCCCTTTGCCACTCTCTCGCCCGTCCATATTTCAG
TCTGTCACCATTGCTCTGCATTGTACTCATCGGTCACTCTCCCTTATTCC
TTTTCTCCCTCCTTCACTCCCTCCCTCAGGCTATCTTCCAAGAGCAACTC
CAAGCCGAAGGTTCGCCCAAGACCCTTCTCCTCGTCGCTGTGCACGACCA
TGCGGGGCATCAACAGGATGAAAGGACTCGGGAGGCGATTTTGCAGGATC
TTGACTCGATTTGGGCTGGAGTTCCCAAGAGTGAGGACAAGGCATATGCA
GAGCTAAGTGAGCTCTTCGATATGGAGATTGCTTTCTTGCCTCACCCGCG
TTACAGACCCGAGGAATACGAGAGGTAGGTTGAATAATTTCACAACAACA
AATGACGATCAGTATTTGCCCTCGTTTCTTAAATTTTCTTTGAGGTGTGG
GACTTCTCCTCTTTTCTCATCCGCCTCTCCCTTCTTCCCTTTCTCCCTCC
CTACCTCCCTACCCACAGTGCCATTGAAGACCTGCGCAACCGTTTCTTGG
ACTTGGACCTCCTGTCCGCCCGTTACTCCAAGCGCGTAGACCGAGAAAGC
TTTCCCTCAACCCTTTCGGTACTTTGGAACGAGATCAAGGGGAGGGATTT
CGTGGTCCTGCCTTCCCGAGGTGAGCTTCTGGCAACCCACCAAATCGAGA
CTCAGTTTTCCTCTGCTTTGGCCACCGTAGAGAGCAAGCTGTCCTCATGG
CGGGCAGCGGTGGAGAGGGGAAGGGTGGTGAGTGGCTTTGGAGAGGTGGG
AGAGAAGCTGTACGCGAGTGTGCTCGAGAACTTTGATGGGGCCACACAGC
CTTTTGCTGTTTCCCCTCTAAGGGTGAGGAAGCACAAGGAGCTGCAGTCA
TTGTTGACGAGGGGGATTAGTGACTTGGTGCGGCGACAGCTGGCGAATTT
GCAGCAGCAGGGGCTGAAGAAATTCAAGGGGATGTTGATGGGGTATGTGG
GGAAAGAGGAGCGGGAGGATTTGGAGAATGACGCGCAACGGGGGTTGGAA
GAGTGGTTTGCAGAGGGGGCGGCGAAGGTGGTTGTCCCGGGCGTTGTGGG
CGCGGGGAGCTATGAGAAGGCACTGTCGGAGTTTGTGGATCTATTGACGG
AGTATGCCGCTAAATGGCCACAATCGCCGGCATACAACGTCCAGGCCATG
AAACAATTGGAGGGTGGGGCCAAGAAAAAGAAAGGGAAGGCGTCGTGGGG
TGCCACGTTTCAGCTCGTGTCATTGTTAAGGACCCCGGGGGATGGGGCTC
TGCAAGGATTTGCGACCTACCAGGCCGGACCGGTTCAATTTTTGTGTGGG
TTGCAGAATGATCGGGATTTGCCAGAGTCAAGGTTGGAAGGGAAGGTGCC
GCCACTGCTGAGGATTCAGCCCAAGGTGGCGTTTGATGTGGATTTGTAAG
GCGGGGGGGGGGGGG
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Coding sequence (CDS) from alignment at chr13:503235..505699-

>NO13G01700.1 ID=NO13G01700.1|Name=NO13G01700.1|organism=Nannochloropsis oceanica|type=CDS|length=1674bp|location=Sequence derived from alignment at chr13:503235..505699- (Nannochloropsis oceanica)
ATGAGTCAACCACAAAAAGGAGGGCTATTGTGGCCCGTGGTGGTGTTGTT
GGTGGTGGGGATGGTGGGGCTAGTGAGCGCAGCGGGGCCGTTAGAAGTAA
TCGATGCGATGGGCAAACTCAAGGGCAAAGAGGAGGTGAAACAGTTCGTG
CAAAAGCGACTTAAGGCCACAGAGCGAGCCGGCCCGGTCATTGTCGGCAG
TGCGGGGAGCAAAGGCTCGGGAAAAAGCACCCTGCTCAACAAGCTCTTTG
ATACTGATTTCGGAGTCGGTCGCTCTCTTGGTCCCGCCGCCCGGCCACAG
GGAGGGGTGGCTTTATGCGCTGCGGGTGATGGGGTATTAATGTGTGTCGA
TTATGATGCGGTAGGCACGGGCGCGGAGGAGGCCACGACGAATGGCAAGA
TTCTGGCCTTGACGACGAGGCTCGCTGATGTGATTGTGCTGAATTTGTGG
AGTTCGGATGTAGGGCGGAATGTGCCGTATAACACGCTGGCGTTGCAGGC
TATCTTCCAAGAGCAACTCCAAGCCGAAGGTTCGCCCAAGACCCTTCTCC
TCGTCGCTGTGCACGACCATGCGGGGCATCAACAGGATGAAAGGACTCGG
GAGGCGATTTTGCAGGATCTTGACTCGATTTGGGCTGGAGTTCCCAAGAG
TGAGGACAAGGCATATGCAGAGCTAAGTGAGCTCTTCGATATGGAGATTG
CTTTCTTGCCTCACCCGCGTTACAGACCCGAGGAATACGAGAGTGCCATT
GAAGACCTGCGCAACCGTTTCTTGGACTTGGACCTCCTGTCCGCCCGTTA
CTCCAAGCGCGTAGACCGAGAAAGCTTTCCCTCAACCCTTTCGGTACTTT
GGAACGAGATCAAGGGGAGGGATTTCGTGGTCCTGCCTTCCCGAGGTGAG
CTTCTGGCAACCCACCAAATCGAGACTCAGTTTTCCTCTGCTTTGGCCAC
CGTAGAGAGCAAGCTGTCCTCATGGCGGGCAGCGGTGGAGAGGGGAAGGG
TGGTGAGTGGCTTTGGAGAGGTGGGAGAGAAGCTGTACGCGAGTGTGCTC
GAGAACTTTGATGGGGCCACACAGCCTTTTGCTGTTTCCCCTCTAAGGGT
GAGGAAGCACAAGGAGCTGCAGTCATTGTTGACGAGGGGGATTAGTGACT
TGGTGCGGCGACAGCTGGCGAATTTGCAGCAGCAGGGGCTGAAGAAATTC
AAGGGGATGTTGATGGGGTATGTGGGGAAAGAGGAGCGGGAGGATTTGGA
GAATGACGCGCAACGGGGGTTGGAAGAGTGGTTTGCAGAGGGGGCGGCGA
AGGTGGTTGTCCCGGGCGTTGTGGGCGCGGGGAGCTATGAGAAGGCACTG
TCGGAGTTTGTGGATCTATTGACGGAGTATGCCGCTAAATGGCCACAATC
GCCGGCATACAACGTCCAGGCCATGAAACAATTGGAGGGTGGGGCCAAGA
AAAAGAAAGGGAAGGCGTCGTGGGGTGCCACGTTTCAGCTCGTGTCATTG
TTAAGGACCCCGGGGGATGGGGCTCTGCAAGGATTTGCGACCTACCAGGC
CGGACCGGTTCAATTTTTGTGTGGGTTGCAGAATGATCGGGATTTGCCAG
AGTCAAGGTTGGAAGGGAAGGTGCCGCCACTGCTGAGGATTCAGCCCAAG
GTGGCGTTTGATGTGGATTTGTAA
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Synonyms
Publications