NO11G03480.2, NO11G03480.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G03480.2
Unique NameNO11G03480.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2158
Alignment locationchr11:1119604..1122117 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:1119604..1122117 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G03480.2 vs.
Match: EWM24841.1 (Leucine carboxyl methyltransferase, partial [Nannochloropsis gaditana])

HSP 1 Score: 224.9 bits (572), Expect = 6.500e-55
Identity = 153/339 (45.13%), Postives = 197/339 (58.11%), Query Frame = 0 
Query:   10 AVTRTADTAALCKWSLVRHGYLASAFFNLPPETLSLLAFLA--GAGPSSSPPYRASPLVHRCYTLRATAIMRQVQSFLEGAK--------KGGKRRK--VVVLGGGMDGLLIALCANNM-ASNKMVSLLEIDVPEVVTRKEAALRAWMERGKEGGKEDLVGAFMRESGKYALKVADLRDLESLNKALEKVEIEEEKEGEE--------------------EMLFILEAVLGYLQPNEVERLLRFLSTTSFSCSLLVVDTGRVAGLAGKDAVAAGVKAAFAKRGSPIEGLEGWQSRRDVQGALRAWGWRGRMTVQTLWEATNGRRGGGRKGGRAGGREGE 316
            A++RTADTAALCKWS+ RHGYL S    LP +T+ LLA LA   AGPS    +RASPL+H CY  RA+A++R VQ+FLE  +        KGG+ R+  VVVLGGGMDGL++ALCA    A+   V ++E+D PEVV RKE  L AW    +EGG+E  V  F+R++G Y L+  DLR+   + + + +V  E    G E                    ++LFILEAVLGY++  EV+ LL  L   + S SLL++DTGR + L   DAVAA V AAF  RG  + GL GW+ R +           GR           GR GG R+GGR GGRE E
Sbjct:   13 AISRTADTAALCKWSMARHGYLHSVAHVLPSDTIPLLASLAEASAGPSGYSSFRASPLLHWCYATRASAVLRAVQTFLEDKEGDANRRLDKGGRLRERLVVVLGGGMDGLVLALCARAAEATGVGVKVVELDAPEVVARKEGVLGAW----REGGREGAVREFLRQTGSYRLEAVDLREGGRVGEVVGEVVREGGGAGREGEAPPDGDGSKGGGQGEVEPQVLFILEAVLGYMRLQEVKILLSTLPMVAPSSSLLIIDTGRTSALKNDDAVAAAVDAAFEARGCSLTGLAGWKDRLE-----------GR--------REGGRGGGRREGGREGGREQE 328
The following BLAST results are available for this feature:
BLAST of NO11G03480.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24841.16.500e-5545.13Leucine carboxyl methyltransferase, partial [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G03480NO11G03480Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G03480.2NO11G03480.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G03480.2.cds1NO11G03480.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03480.2.cds2NO11G03480.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03480.2.cds3NO11G03480.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03480.2.cds4NO11G03480.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G03480.2 ID=NO11G03480.2|Name=NO11G03480.2|organism=Nannochloropsis oceanica|type=mRNA|length=2158bp
AAACACAGATAAGAGCAGGTAGAAGAAGTGTTTGCCATGTAATTTCTTCA
ACGTCTGGCAGACATCTTGCTTATTTAATGCGGTAACACGGGCATCCGAA
CCTCGCTATCGACCTCCTCTTGTCTGCTGTGGCTCCCAACGCAGCGTGCA
ACCGACGCAATTCTCGGGCAGGCCCGAGCGGCGGGCAAAGAGCAGTCCCT
GAAGCTGGAACAAGAGGCGGAGCAAGTGTCGAAGCAGCCAGTCAAAGCAT
TCAAGTCCTAGCAAGGACTGGCGTCGCAAATGGAGGCATGCGTTCCCCCT
ATTTTAGCTGTCACTCGTACGGCAGACACGGCCGCGCTCTGCAAATGGTC
CTTGGTTCGTCACGGCTACTTGGCCTCTGCCTTTTTCAACCTCCCGCCCG
AGACTCTCTCCCTCCTCGCTTTCCTAGCCGGCGCAGGCCCTTCCTCCTCC
CCTCCATACCGAGCTAGTCCACTGGTACATAGGTGTTACACATTACGGGC
CACAGCGATAATGAGACAAGTCCAAAGCTTCCTAGAGGGAGCGAAAAAGG
GAGGGAAGCGACGCAAGGTGGTCGTGTTGGGGGGAGGGATGGATGGGTTA
CTAATTGCTCTGTGTGCGAATAATATGGCTTCGAATAAAATGGTAAGTTT
ACTGGAGATCGATGTACCGGAGGTAGTGACCCGAAAGGAGGCGGCTTTGC
GGGCATGGATGGAGAGGGGGAAGGAGGGAGGAAAGGAGGACCTGGTAGGT
GCATTCATGAGGGAGAGCGGGAAATATGCACTGAAAGTGGCAGATCTGAG
AGACTTGGAGAGCCTGAACAAGGCATTGGAAAAGGTGGAGATAGAAGAGG
AGAAGGAGGGGGAGGAGGAGATGCTCTTCATCTTGGAGGCTGTCTTAGGG
TACCTGCAGCCAAACGAAGTGGAGCGATTGCTCAGATTTCTTTCAACCAC
ATCCTTCTCCTGCTCTCTCTTGGTCGTCGACACGGGCCGCGTGGCAGGCC
TAGCGGGGAAAGACGCAGTGGCTGCGGGAGTTAAAGCTGCCTTTGCCAAG
AGGGGATCTCCAATCGAGGGACTGGAGGGTTGGCAGAGCAGGCGAGATGT
TCAGGGAGCCCTGAGGGCGTGGGGGTGGAGAGGCCGGATGACTGTACAAA
CGCTTTGGGAAGCCACCAACGGAAGGAGAGGAGGAGGGAGGAAGGGAGGG
CGGGCGGGAGGGAGGGAAGGCGAGGTGGAGGAGGAGGCATTTGATGAGTA
CGCCGCCTGGCACCTCTTTGCACACCAATCCTGGTGCATCCATGCTTCTT
CTTCTCCTTGCGCGTCTTCGAAACTTCCCTCCGTCTCTTGCTCTCCCTCC
CTCTCCATCCGTCCCTACCGTCCGCAAACCACTGACCACGCCTCTGTTGC
GGCACTAATTGAGGAAGGACGGGAGGACGCGAAGGTGGGAAGGCCGGGAG
TGGCCTCCTTCGTGGCCAGGGCCCTGAGCAAGGATATGAAGCTTTTGGAG
AAGCGGAGATATGCCGGAAGATTCTGGATTGCGGAGGAAAAGGGGCAGGG
GGAGGAGGGAGGAGTGGTGGTAGTGGGGTGTGTAGGCTTACGTGTGTCGA
CCAAGAAGGAGGGAGGGAGGGAGGGAGAGGTGGTGCGACTGTCTGTGGGG
AAGGAATGGAGAGGCCGAGGAGTAGGACTGCGACTGTTGAAATATGTGGA
AAAAGTTGCTCAGACATGGGTGGATGGTGCAGAAGAAGTGGGAGCTGAAG
GAGGAGGAGGAGGAAGAGGAGGAGGAGAGGAAGAAGGAAGACAAGAAGAA
GAAAATGGAGATAGACATGCAAAAGGAAAATTGAGGGTGTCTGCAGCAGG
AAGAGGGGTGGGAGAAAAGGGAGGAGAAATTGATGTTGGCGAAGGAGTTA
GTAAAGAAGGGCAATCAGGCTTGCGTCGTTTACGGGCCACGACGCTTGGC
GAAGAGGCGTTGCCGGGTGCCCTGGCGTTGTACGTTGACCGGGCAGGCTG
GGTTATGGAGCGCCAGAGTACATACGGAGGAGGGAAAGGGGGACAAGAGG
GTGAAGGGATATTGTACCATTTGTACAAAGACATTTGAGATTGAGAAGCC
TATTGAGAAGACTATTGAAATTAAAAAATATCGTTTAAACGTGAAAAGTT
GCTACCTA
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protein sequence of NO11G03480.2

>NO11G03480.2-protein ID=NO11G03480.2-protein|Name=NO11G03480.2|organism=Nannochloropsis oceanica|type=polypeptide|length=603bp
MEACVPPILAVTRTADTAALCKWSLVRHGYLASAFFNLPPETLSLLAFLA
GAGPSSSPPYRASPLVHRCYTLRATAIMRQVQSFLEGAKKGGKRRKVVVL
GGGMDGLLIALCANNMASNKMVSLLEIDVPEVVTRKEAALRAWMERGKEG
GKEDLVGAFMRESGKYALKVADLRDLESLNKALEKVEIEEEKEGEEEMLF
ILEAVLGYLQPNEVERLLRFLSTTSFSCSLLVVDTGRVAGLAGKDAVAAG
VKAAFAKRGSPIEGLEGWQSRRDVQGALRAWGWRGRMTVQTLWEATNGRR
GGGRKGGRAGGREGEVEEEAFDEYAAWHLFAHQSWCIHASSSPCASSKLP
SVSCSPSLSIRPYRPQTTDHASVAALIEEGREDAKVGRPGVASFVARALS
KDMKLLEKRRYAGRFWIAEEKGQGEEGGVVVVGCVGLRVSTKKEGGREGE
VVRLSVGKEWRGRGVGLRLLKYVEKVAQTWVDGAEEVGAEGGGGGRGGGE
EEGRQEEENGDRHAKGKLRVSAAGRGVGEKGGEIDVGEGVSKEGQSGLRR
LRATTLGEEALPGALALYVDRAGWVMERQSTYGGGKGGQEGEGILYHLYK
DI*
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mRNA from alignment at chr11:1119604..1122117+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G03480.2 ID=NO11G03480.2|Name=NO11G03480.2|organism=Nannochloropsis oceanica|type=mRNA|length=2514bp|location=Sequence derived from alignment at chr11:1119604..1122117+ (Nannochloropsis oceanica)
AAACACAGATAAGAGCAGGTAGAAGAAGTGTTTGCCATGTAATTTCTTCA
ACGTCTGGCAGACATCTTGCTTATTTAATGCGGTAACACGGGCATCCGAA
CCTCGCTATCGACCTCCTCTTGTCTGCTGTGGCTCCCAACGCAGCGTGCA
ACCGACGCAATTCTCGGGCAGGCCCGAGCGGCGGGCAAAGAGCAGTCCCT
GAAGCTGGAACAAGAGGCGGAGCAAGTGTCGAAGCAGCCAGTCAAAGCAT
TCAAGTCCTAGCAAGGACTGGCGTCGCAAATGGAGGCATGCGTTCCCCCT
ATTTTAGCTGTCACTCGTACGGCAGACACGGCCGCGCTCTGCAAATGGTA
AATATTGTACGCTCTCATGTCACCTCCCTCAATTGATCGTCCTCTCACCA
TTTGTTTGAAATCAAACTAACCCCTCCTCCAGGTCCTTGGTTCGTCACGG
CTACTTGGCCTCTGCCTTTTTCAACCTCCCGCCCGAGACTCTCTCCCTCC
TCGCTTTCCTAGCCGGCGCAGGCCCTTCCTCCTCCCCTCCATACCGAGCT
AGTCCACTGGTACATAGGTGTTACACATTACGGGCCACAGCGATAATGAG
ACAAGTCCAAAGCTTCCTAGAGGGAGCGAAAAAGGGAGGGAAGCGACGCA
AGGTGGTCGTGTTGGGGGGAGGGATGGATGGGTTACTAATTGCTCTGTGT
GCGAATAATATGGCTTCGAATAAAATGGTAAGTTTACTGGAGATCGATGT
ACCGGAGGTAGTGACCCGAAAGGAGGCGGCTTTGCGGGCATGGATGGAGA
GGGGGAAGGAGGGAGGAAAGGAGGACCTGGTAGGTGCATTCATGAGGGAG
AGCGGGAAATATGCACTGAAAGTGGCAGATCTGAGAGACTTGGAGAGCCT
GAACAAGGCATTGGAAAAGGTGGAGATAGAAGAGGAGAAGGAGGGGGAGG
AGGAGATGCTCTTCATCTTGGAGGCTGTCTTAGGGTACCTGCAGCCAAAC
GAAGTGGAGCGATTGCTCAGGTGCGTCCTGTCGCCTAAGTGAGTATCGTG
CGTCCACCCTCACCCCCTCACCTCTCTCATCGTTCTCTTCTACCTCCTCT
CTGATTTGCCTCCCTAGATTTCTTTCAACCACATCCTTCTCCTGCTCTCT
CTTGGTCGTCGACACGGGCCGCGTGGCAGGCCTAGCGGGGAAAGACGCAG
TGGCTGCGGGAGTTAAAGCTGCCTTTGCCAAGAGGGGATCTCCAATCGAG
GGACTGGAGGGTTGGCAGAGCAGGTGAAGGAGGGAGGAGGGGAGGGAGGA
GGGGAGGGAGGGGAAAGAGAGCAATTCTTCGCCGGCCCCTAATTATGGCC
CATGCTCCCACTCACCCACTTCCTCCCCTCTCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCCTCCCTCCCTCCCCTCCCTCCCTCCTTTTATCCTAGGCG
AGATGTTCAGGGAGCCCTGAGGGCGTGGGGGTGGAGAGGCCGGATGACTG
TACAAACGCTTTGGGAAGCCACCAACGGAAGGAGAGGAGGAGGGAGGAAG
GGAGGGCGGGCGGGAGGGAGGGAAGGCGAGGTGGAGGAGGAGGCATTTGA
TGAGTACGCCGCCTGGCACCTCTTTGCACACCAATCCTGGTGCATCCATG
CTTCTTCTTCTCCTTGCGCGTCTTCGAAACTTCCCTCCGTCTCTTGCTCT
CCCTCCCTCTCCATCCGTCCCTACCGTCCGCAAACCACTGACCACGCCTC
TGTTGCGGCACTAATTGAGGAAGGACGGGAGGACGCGAAGGTGGGAAGGC
CGGGAGTGGCCTCCTTCGTGGCCAGGGCCCTGAGCAAGGATATGAAGCTT
TTGGAGAAGCGGAGATATGCCGGAAGATTCTGGATTGCGGAGGAAAAGGG
GCAGGGGGAGGAGGGAGGAGTGGTGGTAGTGGGGTGTGTAGGCTTACGTG
TGTCGACCAAGAAGGAGGGAGGGAGGGAGGGAGAGGTGGTGCGACTGTCT
GTGGGGAAGGAATGGAGAGGCCGAGGAGTAGGACTGCGACTGTTGAAATA
TGTGGAAAAAGTTGCTCAGACATGGGTGGATGGTGCAGAAGAAGTGGGAG
CTGAAGGAGGAGGAGGAGGAAGAGGAGGAGGAGAGGAAGAAGGAAGACAA
GAAGAAGAAAATGGAGATAGACATGCAAAAGGAAAATTGAGGGTGTCTGC
AGCAGGAAGAGGGGTGGGAGAAAAGGGAGGAGAAATTGATGTTGGCGAAG
GAGTTAGTAAAGAAGGGCAATCAGGCTTGCGTCGTTTACGGGCCACGACG
CTTGGCGAAGAGGCGTTGCCGGGTGCCCTGGCGTTGTACGTTGACCGGGC
AGGCTGGGTTATGGAGCGCCAGAGTACATACGGAGGAGGGAAAGGGGGAC
AAGAGGGTGAAGGGATATTGTACCATTTGTACAAAGACATTTGAGATTGA
GAAGCCTATTGAGAAGACTATTGAAATTAAAAAATATCGTTTAAACGTGA
AAAGTTGCTACCTA
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Coding sequence (CDS) from alignment at chr11:1119604..1122117+

>NO11G03480.2 ID=NO11G03480.2|Name=NO11G03480.2|organism=Nannochloropsis oceanica|type=CDS|length=1809bp|location=Sequence derived from alignment at chr11:1119604..1122117+ (Nannochloropsis oceanica)
ATGGAGGCATGCGTTCCCCCTATTTTAGCTGTCACTCGTACGGCAGACAC
GGCCGCGCTCTGCAAATGGTCCTTGGTTCGTCACGGCTACTTGGCCTCTG
CCTTTTTCAACCTCCCGCCCGAGACTCTCTCCCTCCTCGCTTTCCTAGCC
GGCGCAGGCCCTTCCTCCTCCCCTCCATACCGAGCTAGTCCACTGGTACA
TAGGTGTTACACATTACGGGCCACAGCGATAATGAGACAAGTCCAAAGCT
TCCTAGAGGGAGCGAAAAAGGGAGGGAAGCGACGCAAGGTGGTCGTGTTG
GGGGGAGGGATGGATGGGTTACTAATTGCTCTGTGTGCGAATAATATGGC
TTCGAATAAAATGGTAAGTTTACTGGAGATCGATGTACCGGAGGTAGTGA
CCCGAAAGGAGGCGGCTTTGCGGGCATGGATGGAGAGGGGGAAGGAGGGA
GGAAAGGAGGACCTGGTAGGTGCATTCATGAGGGAGAGCGGGAAATATGC
ACTGAAAGTGGCAGATCTGAGAGACTTGGAGAGCCTGAACAAGGCATTGG
AAAAGGTGGAGATAGAAGAGGAGAAGGAGGGGGAGGAGGAGATGCTCTTC
ATCTTGGAGGCTGTCTTAGGGTACCTGCAGCCAAACGAAGTGGAGCGATT
GCTCAGATTTCTTTCAACCACATCCTTCTCCTGCTCTCTCTTGGTCGTCG
ACACGGGCCGCGTGGCAGGCCTAGCGGGGAAAGACGCAGTGGCTGCGGGA
GTTAAAGCTGCCTTTGCCAAGAGGGGATCTCCAATCGAGGGACTGGAGGG
TTGGCAGAGCAGGCGAGATGTTCAGGGAGCCCTGAGGGCGTGGGGGTGGA
GAGGCCGGATGACTGTACAAACGCTTTGGGAAGCCACCAACGGAAGGAGA
GGAGGAGGGAGGAAGGGAGGGCGGGCGGGAGGGAGGGAAGGCGAGGTGGA
GGAGGAGGCATTTGATGAGTACGCCGCCTGGCACCTCTTTGCACACCAAT
CCTGGTGCATCCATGCTTCTTCTTCTCCTTGCGCGTCTTCGAAACTTCCC
TCCGTCTCTTGCTCTCCCTCCCTCTCCATCCGTCCCTACCGTCCGCAAAC
CACTGACCACGCCTCTGTTGCGGCACTAATTGAGGAAGGACGGGAGGACG
CGAAGGTGGGAAGGCCGGGAGTGGCCTCCTTCGTGGCCAGGGCCCTGAGC
AAGGATATGAAGCTTTTGGAGAAGCGGAGATATGCCGGAAGATTCTGGAT
TGCGGAGGAAAAGGGGCAGGGGGAGGAGGGAGGAGTGGTGGTAGTGGGGT
GTGTAGGCTTACGTGTGTCGACCAAGAAGGAGGGAGGGAGGGAGGGAGAG
GTGGTGCGACTGTCTGTGGGGAAGGAATGGAGAGGCCGAGGAGTAGGACT
GCGACTGTTGAAATATGTGGAAAAAGTTGCTCAGACATGGGTGGATGGTG
CAGAAGAAGTGGGAGCTGAAGGAGGAGGAGGAGGAAGAGGAGGAGGAGAG
GAAGAAGGAAGACAAGAAGAAGAAAATGGAGATAGACATGCAAAAGGAAA
ATTGAGGGTGTCTGCAGCAGGAAGAGGGGTGGGAGAAAAGGGAGGAGAAA
TTGATGTTGGCGAAGGAGTTAGTAAAGAAGGGCAATCAGGCTTGCGTCGT
TTACGGGCCACGACGCTTGGCGAAGAGGCGTTGCCGGGTGCCCTGGCGTT
GTACGTTGACCGGGCAGGCTGGGTTATGGAGCGCCAGAGTACATACGGAG
GAGGGAAAGGGGGACAAGAGGGTGAAGGGATATTGTACCATTTGTACAAA
GACATTTGA
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Synonyms
Publications