NO11G02670.1, NO11G02670.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO11G02670.1
Unique Name	NO11G02670.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2632
Alignment location	chr11:828315..830946 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr11	genome	chr11:828315..830946 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO11G02670.1 vs.
Match: EWM24933.1 (hypothetical protein Naga_100086g21 [Nannochloropsis gaditana])

HSP 1 Score: 308.9 bits (790), Expect = 1.700e-80
Identity = 193/329 (58.66%), Postives = 229/329 (69.60%), Query Frame = 0

Query:    1 MSRSYRLVGALLPRLPLARLLLLFFLVHPGSCATFESRHYLTQRYPNRDVIPPASLLPSPGQRRRHDTNPGSLLFVRPPTVTDPQQSHSHKHNKKGQTMPSSPVARRVVIGNFVSELESSNYDYRRNAGPRPRLPGQQVQQQHHAHDQQRQ---------QQQVVSKLSSSLTSVSGGASAMPSASVGRLLKKSAASFVDAYDGVMSFVGSRIVTTETSFSKALLAVSSSMATPLTYLEGQKMSSLSSSSSRG----------LRLTSRGAEGR----MSASSVGGNLAKEMLSSSFSSPALVGFMDVDPFEKSKKHFKRNTSLAKLLL 307
            M+RS+R+V  L PR+PLARLL LFFLVHPGS ATFESRHYLTQRYPNRDVIPP SLL S  +RRR+DT    L F+RPP    P +S       K Q + SS VA +V+IG+FVSELE+ N++ RR  GPRPR P Q+     HAH QQ Q         +Q++VS L SSL SV GGAS    + VG+L +KSAA+ VDAYDGV+SFVGSRIVTTE SF+KALLAVSSS+ATPL+ +EG+     S  S  G          +  +S  A GR    +S + +GG  + E LS+SFSSPALVGFMDVDPFEKSKKHFKRNTSLAKLLL
Sbjct:    1 MTRSHRVVKGLFPRVPLARLLALFFLVHPGSSATFESRHYLTQRYPNRDVIPPRSLLTSQ-RRRRYDTTTSPLSFIRPPVQAIPARSD------KDQAILSSAVALKVIIGSFVSELETCNHERRRIGGPRPRSPDQR---SSHAHPQQLQSNSQGRGHHKQRLVSSLPSSLASVQGGASVSSPSPVGKLFQKSAATLVDAYDGVLSFVGSRIVTTEASFNKALLAVSSSLATPLSQVEGRTAGFTSLMSRNGDAHMGMRPSSIEASSEAARGRHDNYLSVAGMGG--SGEALSTSFSSPALVGFMDVDPFEKSKKHFKRNTSLAKLLL 317

The following BLAST results are available for this feature:

BLAST of NO11G02670.1 vs.

BLAST of NO11G02670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM24933.1	1.700e-80	58.66	hypothetical protein Naga_100086g21 [Nannochlorops...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO11G02670	NO11G02670	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO11G02670.1	NO11G02670.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO11G02670.1.cds1	NO11G02670.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr11:828315..830946-
coding sequence from alignment at chr11:828315..830946-

mRNA sequence

>NO11G02670.1 ID=NO11G02670.1|Name=NO11G02670.1|organism=Nannochloropsis oceanica|type=mRNA|length=2632bp
GAAAAGCAAGGAATTGTTCAGCGGCGTCAAAAGACATCGAGACACGAATG
TTTGGAGTTATTACATATACAAGTGTGAAGCTCTTGATTCATTTGTTTGT
GAAGCCTTCATTTTCTGGTGGGCTCGCCTGACACAGCCTCCTCGCGCACG
CATACGTCGTTCGAGCACGCTCAGGAGTGAAACTTACTCTGGCTTGAAGT
GTGCGAGTCGGTCTTTGCACGTCCACGTCCCCAAACAAGAGCCTGCATCC
TCTTGACCACCTCTTTTACGCCCCTATCTTCACTCACACCCTTTCCCCTA
CATTCACACGACCACAGACACAGACACTGCCATCAGCCTTCAAGCAATCA
CACCAACGCGCAACTCCCTCGCACTTCTTCCCGGGACCATGTCACGCTCC
TACCGGCTCGTGGGAGCCCTTCTTCCCCGTCTTCCCCTAGCCCGTCTCCT
CCTCCTCTTCTTTCTGGTGCACCCAGGATCCTGCGCCACCTTTGAGAGCC
GTCACTATTTAACACAACGTTACCCCAATCGGGACGTGATTCCTCCCGCC
AGCCTCCTCCCCTCCCCCGGCCAACGGCGCCGCCATGACACCAATCCTGG
CTCGCTCCTTTTTGTCCGTCCACCCACTGTGACAGACCCACAACAAAGCC
ACAGCCACAAGCACAACAAAAAGGGACAGACCATGCCGTCCTCTCCAGTG
GCTCGCCGCGTCGTGATTGGCAATTTCGTCTCTGAGCTGGAGAGCAGCAA
TTACGACTATCGACGGAACGCGGGGCCTCGTCCTCGCCTTCCCGGCCAGC
AAGTGCAACAACAACATCATGCACATGATCAGCAACGGCAGCAACAGCAA
GTTGTCTCCAAACTTTCTTCCTCCCTCACCTCCGTCTCAGGCGGTGCTTC
CGCAATGCCCTCGGCGTCGGTGGGCAGGCTCCTTAAAAAGTCCGCCGCTT
CCTTCGTTGATGCCTATGACGGCGTCATGAGCTTTGTGGGAAGCCGAATT
GTGACAACCGAGACAAGCTTCAGCAAGGCCCTGCTTGCAGTCTCCTCCTC
CATGGCCACCCCCCTCACATACCTAGAAGGACAGAAGATGTCCTCCTTGT
CCTCCTCTTCCTCGAGAGGCTTGAGATTGACATCTCGAGGAGCGGAAGGA
CGTATGTCTGCTTCCTCAGTCGGTGGGAACTTGGCAAAGGAGATGCTTAG
TTCCTCCTTTTCTTCTCCGGCCCTGGTGGGGTTCATGGATGTGGACCCAT
TCGAGAAGAGCAAGAAGCATTTCAAGCGCAACACCTCGCTGGCCAAGCTC
CTTTTGTAAAGGAGGAAGCGAAAAAGATTTGAAGGTAGCCTGACTTTCTA
GACCATCATCCTCCTCCTGTTCTCTCCCACTCTTCTCTCTTCCTCAACAA
GAGCATCTGCACCTAAAAGATGACTTGAGAAGACATGATGATGGCTCGTT
CCTGTATATTGATAGATAGAAAACCTCTGTTGTTGACCGTGTGATAACTG
AGCATTGTAGGCACTCTTTTACCTTTTTGCCCACGTGTTCTGCGATGCTA
GTCACTACTATGTATTTGATTTAAACGTGTGCGTTGCAGCAAGGGCCACC
CACACTGAAATATTAGCACTACCACCATCATGTGCCGGGAGAGACACAAG
CACAGACGCACATGCACATCCATACACACACACGGAACAAGAGATCGAAA
GAGAGAAAAAAAGAACACTGATGCATCGTGCCACCTCACGCATGGGGAAT
GGGGGAGACTGCGTTGCTTGGGTCATCCATTATTCAGTCACGCTGGATTG
ATTGGTCCATTGTATCGTTTAGGAATAGTAGCAGTAGTAGTATTAGTAGT
AATAGGAGTTCGGCTTGCTTCCGACTGAGATATATGATTGAAACTGAAAT
GATTAAATTATTATTATTCCCATCACCCCATAGTGGGTCGCTTTCGAGAG
AGTGAAAAAAGATATGACCAGACAGACGCACCGACGGAACGAAAATCTGT
CGTCAAGAGATCGTGAAGTTTCGCGCAGCGTGAGAGAGACACGACCTTTG
AGAAATGACACGAAGAAAAGTGGCAAACTTGTACGACATGAAGAACAAAA
TGGAAGGCGAAAAATATATAATATTGAAAAAAACAAAAAAAGAGGAGCAA
GTGAGGTGGAGAGGAAGAGGAAGAGAGCAAGAGAGAGAGAAAACAAAGCA
AGCCAGGAGAAGGTATTATCATTCATTAAATTGATCTCTGATGGGTTTCT
AGCTTACACTTTCATGACTGAAATATTAATATAGGCAAGGGAAAGGGTTG
TAGATGTCCAATCAACAAGGAGGAACTGGGGAACATTGACGACACAGGCT
GGAGAAAATGACGTAAAGCGGAACCCCTACCTGCCTGTTGCCCCGTCTGC
GTGCGCATGGTCGAAAAAAAAAGAAAAGTGAGATAGGCAAAAAGTGAGGC
GAGGGGCTGACGGAAGAGGGCAGGAATTAGTAAATTTCTTGAGATGTGCG
ACATGTGTGCTTGCTATCATGTCCCGTGTGTGGGCTAGAGGCAGCCAGAA
ATCGAATATTTGGCGGATTGATATGTAAGTCGGGTCGAAACGTGCTAGAA
CAACAAAGAACTACAACACACCTTTAGAGAAG

protein sequence of NO11G02670.1

>NO11G02670.1-protein ID=NO11G02670.1-protein|Name=NO11G02670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=307bp
MSRSYRLVGALLPRLPLARLLLLFFLVHPGSCATFESRHYLTQRYPNRDV
IPPASLLPSPGQRRRHDTNPGSLLFVRPPTVTDPQQSHSHKHNKKGQTMP
SSPVARRVVIGNFVSELESSNYDYRRNAGPRPRLPGQQVQQQHHAHDQQR
QQQQVVSKLSSSLTSVSGGASAMPSASVGRLLKKSAASFVDAYDGVMSFV
GSRIVTTETSFSKALLAVSSSMATPLTYLEGQKMSSLSSSSSRGLRLTSR
GAEGRMSASSVGGNLAKEMLSSSFSSPALVGFMDVDPFEKSKKHFKRNTS
LAKLLL*

mRNA from alignment at chr11:828315..830946-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO11G02670.1 ID=NO11G02670.1|Name=NO11G02670.1|organism=Nannochloropsis oceanica|type=mRNA|length=2632bp|location=Sequence derived from alignment at chr11:828315..830946- (Nannochloropsis oceanica)
GAAAAGCAAGGAATTGTTCAGCGGCGTCAAAAGACATCGAGACACGAATG
TTTGGAGTTATTACATATACAAGTGTGAAGCTCTTGATTCATTTGTTTGT
GAAGCCTTCATTTTCTGGTGGGCTCGCCTGACACAGCCTCCTCGCGCACG
CATACGTCGTTCGAGCACGCTCAGGAGTGAAACTTACTCTGGCTTGAAGT
GTGCGAGTCGGTCTTTGCACGTCCACGTCCCCAAACAAGAGCCTGCATCC
TCTTGACCACCTCTTTTACGCCCCTATCTTCACTCACACCCTTTCCCCTA
CATTCACACGACCACAGACACAGACACTGCCATCAGCCTTCAAGCAATCA
CACCAACGCGCAACTCCCTCGCACTTCTTCCCGGGACCATGTCACGCTCC
TACCGGCTCGTGGGAGCCCTTCTTCCCCGTCTTCCCCTAGCCCGTCTCCT
CCTCCTCTTCTTTCTGGTGCACCCAGGATCCTGCGCCACCTTTGAGAGCC
GTCACTATTTAACACAACGTTACCCCAATCGGGACGTGATTCCTCCCGCC
AGCCTCCTCCCCTCCCCCGGCCAACGGCGCCGCCATGACACCAATCCTGG
CTCGCTCCTTTTTGTCCGTCCACCCACTGTGACAGACCCACAACAAAGCC
ACAGCCACAAGCACAACAAAAAGGGACAGACCATGCCGTCCTCTCCAGTG
GCTCGCCGCGTCGTGATTGGCAATTTCGTCTCTGAGCTGGAGAGCAGCAA
TTACGACTATCGACGGAACGCGGGGCCTCGTCCTCGCCTTCCCGGCCAGC
AAGTGCAACAACAACATCATGCACATGATCAGCAACGGCAGCAACAGCAA
GTTGTCTCCAAACTTTCTTCCTCCCTCACCTCCGTCTCAGGCGGTGCTTC
CGCAATGCCCTCGGCGTCGGTGGGCAGGCTCCTTAAAAAGTCCGCCGCTT
CCTTCGTTGATGCCTATGACGGCGTCATGAGCTTTGTGGGAAGCCGAATT
GTGACAACCGAGACAAGCTTCAGCAAGGCCCTGCTTGCAGTCTCCTCCTC
CATGGCCACCCCCCTCACATACCTAGAAGGACAGAAGATGTCCTCCTTGT
CCTCCTCTTCCTCGAGAGGCTTGAGATTGACATCTCGAGGAGCGGAAGGA
CGTATGTCTGCTTCCTCAGTCGGTGGGAACTTGGCAAAGGAGATGCTTAG
TTCCTCCTTTTCTTCTCCGGCCCTGGTGGGGTTCATGGATGTGGACCCAT
TCGAGAAGAGCAAGAAGCATTTCAAGCGCAACACCTCGCTGGCCAAGCTC
CTTTTGTAAAGGAGGAAGCGAAAAAGATTTGAAGGTAGCCTGACTTTCTA
GACCATCATCCTCCTCCTGTTCTCTCCCACTCTTCTCTCTTCCTCAACAA
GAGCATCTGCACCTAAAAGATGACTTGAGAAGACATGATGATGGCTCGTT
CCTGTATATTGATAGATAGAAAACCTCTGTTGTTGACCGTGTGATAACTG
AGCATTGTAGGCACTCTTTTACCTTTTTGCCCACGTGTTCTGCGATGCTA
GTCACTACTATGTATTTGATTTAAACGTGTGCGTTGCAGCAAGGGCCACC
CACACTGAAATATTAGCACTACCACCATCATGTGCCGGGAGAGACACAAG
CACAGACGCACATGCACATCCATACACACACACGGAACAAGAGATCGAAA
GAGAGAAAAAAAGAACACTGATGCATCGTGCCACCTCACGCATGGGGAAT
GGGGGAGACTGCGTTGCTTGGGTCATCCATTATTCAGTCACGCTGGATTG
ATTGGTCCATTGTATCGTTTAGGAATAGTAGCAGTAGTAGTATTAGTAGT
AATAGGAGTTCGGCTTGCTTCCGACTGAGATATATGATTGAAACTGAAAT
GATTAAATTATTATTATTCCCATCACCCCATAGTGGGTCGCTTTCGAGAG
AGTGAAAAAAGATATGACCAGACAGACGCACCGACGGAACGAAAATCTGT
CGTCAAGAGATCGTGAAGTTTCGCGCAGCGTGAGAGAGACACGACCTTTG
AGAAATGACACGAAGAAAAGTGGCAAACTTGTACGACATGAAGAACAAAA
TGGAAGGCGAAAAATATATAATATTGAAAAAAACAAAAAAAGAGGAGCAA
GTGAGGTGGAGAGGAAGAGGAAGAGAGCAAGAGAGAGAGAAAACAAAGCA
AGCCAGGAGAAGGTATTATCATTCATTAAATTGATCTCTGATGGGTTTCT
AGCTTACACTTTCATGACTGAAATATTAATATAGGCAAGGGAAAGGGTTG
TAGATGTCCAATCAACAAGGAGGAACTGGGGAACATTGACGACACAGGCT
GGAGAAAATGACGTAAAGCGGAACCCCTACCTGCCTGTTGCCCCGTCTGC
GTGCGCATGGTCGAAAAAAAAAGAAAAGTGAGATAGGCAAAAAGTGAGGC
GAGGGGCTGACGGAAGAGGGCAGGAATTAGTAAATTTCTTGAGATGTGCG
ACATGTGTGCTTGCTATCATGTCCCGTGTGTGGGCTAGAGGCAGCCAGAA
ATCGAATATTTGGCGGATTGATATGTAAGTCGGGTCGAAACGTGCTAGAA
CAACAAAGAACTACAACACACCTTTAGAGAAG

Coding sequence (CDS) from alignment at chr11:828315..830946-

>NO11G02670.1 ID=NO11G02670.1|Name=NO11G02670.1|organism=Nannochloropsis oceanica|type=CDS|length=921bp|location=Sequence derived from alignment at chr11:828315..830946- (Nannochloropsis oceanica)
ATGTCACGCTCCTACCGGCTCGTGGGAGCCCTTCTTCCCCGTCTTCCCCT
AGCCCGTCTCCTCCTCCTCTTCTTTCTGGTGCACCCAGGATCCTGCGCCA
CCTTTGAGAGCCGTCACTATTTAACACAACGTTACCCCAATCGGGACGTG
ATTCCTCCCGCCAGCCTCCTCCCCTCCCCCGGCCAACGGCGCCGCCATGA
CACCAATCCTGGCTCGCTCCTTTTTGTCCGTCCACCCACTGTGACAGACC
CACAACAAAGCCACAGCCACAAGCACAACAAAAAGGGACAGACCATGCCG
TCCTCTCCAGTGGCTCGCCGCGTCGTGATTGGCAATTTCGTCTCTGAGCT
GGAGAGCAGCAATTACGACTATCGACGGAACGCGGGGCCTCGTCCTCGCC
TTCCCGGCCAGCAAGTGCAACAACAACATCATGCACATGATCAGCAACGG
CAGCAACAGCAAGTTGTCTCCAAACTTTCTTCCTCCCTCACCTCCGTCTC
AGGCGGTGCTTCCGCAATGCCCTCGGCGTCGGTGGGCAGGCTCCTTAAAA
AGTCCGCCGCTTCCTTCGTTGATGCCTATGACGGCGTCATGAGCTTTGTG
GGAAGCCGAATTGTGACAACCGAGACAAGCTTCAGCAAGGCCCTGCTTGC
AGTCTCCTCCTCCATGGCCACCCCCCTCACATACCTAGAAGGACAGAAGA
TGTCCTCCTTGTCCTCCTCTTCCTCGAGAGGCTTGAGATTGACATCTCGA
GGAGCGGAAGGACGTATGTCTGCTTCCTCAGTCGGTGGGAACTTGGCAAA
GGAGATGCTTAGTTCCTCCTTTTCTTCTCCGGCCCTGGTGGGGTTCATGG
ATGTGGACCCATTCGAGAAGAGCAAGAAGCATTTCAAGCGCAACACCTCG
CTGGCCAAGCTCCTTTTGTAA

Synonyms

Publications