NO09G00450.1, NO09G00450.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00450.1
Unique NameNO09G00450.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2212
Alignment locationchr9:193773..196252 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:193773..196252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G00450.1 vs.
Match: AET85054.1 (VCP1 [Nannochloropsis sp. W2J3B])

HSP 1 Score: 368.6 bits (945), Expect = 1.300e-98
Identity = 183/209 (87.56%), Postives = 195/209 (93.30%), Query Frame = 0 
Query:    1 MKTAALLTVSTLMGAQAFMAPAPKFSRTRGVARMSFEDEAGVTGPLGYWDPLGLSADGDVEKFNKYRAAEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAGDGIPQSMPYGIGAVTSGAWAAQGWAQVLLFAAALEVLAPQKEDKIPGDVQPDTSAFAKLDEKSEEEALAYQNKELNNGRLAMVSWLGAVVGASLTGGEDPVATLLHKLG 210
            MKTAALLTVSTLMGAQAFMAPAPKFSRTRGVARMSFE+EAGVT PLGYWDPLGLSADGDV+KFN+YRA EIKHGRVAMLAMLHTL+TG GV LPGLV AGDGIPQSMPYGIGA+TSGAWAAQGWAQVL+F +ALEVLAPQKEDKIPGDVQPDTSAFAKLD+K+EEEAL YQN E+NNGRLAMV+W GA VGA LT GE PV TLL+KLG
Sbjct:    1 MKTAALLTVSTLMGAQAFMAPAPKFSRTRGVARMSFENEAGVTAPLGYWDPLGLSADGDVDKFNRYRAIEIKHGRVAMLAMLHTLITGAGVTLPGLVTAGDGIPQSMPYGIGAITSGAWAAQGWAQVLIFCSALEVLAPQKEDKIPGDVQPDTSAFAKLDDKTEEEALKYQNTEINNGRLAMVAWTGATVGALLTNGEHPVTTLLNKLG 209
The following BLAST results are available for this feature:
BLAST of NO09G00450.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
AET85054.11.300e-9887.56VCP1 [Nannochloropsis sp. W2J3B][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00450NO09G00450Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00450.1NO09G00450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00450.1.cds1NO09G00450.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00450.1.cds2NO09G00450.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00450.1.cds3NO09G00450.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00450.1 ID=NO09G00450.1|Name=NO09G00450.1|organism=Nannochloropsis oceanica|type=mRNA|length=2212bp
GCTGCTGTAGAGGATATGGCATCGGGGGTGGGACACGAGCGGGATGTAAG
TGTTGCGATGTTTTGAGGGGTTTCGTCGGGTATGGTGCGAGTCGTGTGAA
GATGTGGAGCACGTGTGGAAAAGGGCAAGAGAACTGGGCAGAACGTATCT
AGGTTTGAAAGCACTCTTCATACTTGATCGCTGGATACGCAACTCAAGGG
AAAGGTCTCTCGAAAGAACAAGAGCGAGAGCCCAGGCTCCTAGAAGGAAG
AGCAAGGGGAGGTCTGTCCATGTCCAATCAGGTAAAGCACACAAAGAGCG
AAGTACAAGGTATCAGCTCTAGCAACTTGGTCAACTAGCTGGGTTTTCTT
GTGACAGGGAAAGACTGTTGAAGATAGATCAGGGGGCACTTATGGGCTCT
CAAGAGGGTTGAGCTGAGCCTGTTCCCTCGCTCCGCTTTGTCCGACGACA
GAAGGCTTTGCGGGTCTTGCCCTCGGGGATCCTTACTGCAAGGTTGAGGC
GTTGAGCAGACCCCATGGGAGGTCGTTGAGGCTTTCGGCACTAAGACAAG
ATAGGCAAGATGCCCCAATGTCCTGTTACCAACTGGGGTGTGGAAGCACG
CCTGGAGCCTCAAGGGCTCGTTGATAAGGGGATGAAATCGTCCCGGCGAG
CAAATCCTGGTTGACCTCGCAGGATCGTTGAAAAGCAGGAGGCACGTTCG
GCGCGAGCCGGTCTGTTGCAGACGCGTGCCATCTTGTTCCGTCTTGCTTA
CGTTTTGGTTGTTTTGACTACTGCTTGACTCTTTGTCATATGTTTATTTG
GTGCATGTGTTTTCTCCTTCTGTCTTCTGTGCCACTGCACCCCAGCGGTT
CCTGCCCCATGGACAGGACCGCATCGCACCTGCATCCCTGTCCTCTCGTC
AAGCCCCCCATCTCTTCGGCCCGTGGGACAATGAAGGGATGGCAGGGAAG
ATCTTGCTTTGGTATCTCACTCTAAGCACACAATCAAGACAGTCACAGAC
ACGCAGCGAAGGCCTCCACCACACAGCCATTTATCACATGCCCACTTCGC
CCACCTCGCATTGCACTCACGCTCCGCCCTTTCCCTCCCCAAACACTCCA
CACGATAGTCAACTCCACCACTCTCTCAAGTATGAAGACCGCCGCTCTCC
TCACTGTCTCTACCCTTATGGGCGCCCAGGCCTTCATGGCCCCCGCCCCC
AAGTTCTCCCGCACCCGCGGTGTTGCCCGCATGTCCTTCGAGGACGAGGC
GGGTGTGACGGGCCCCTTGGGCTACTGGGACCCCCTTGGCCTCTCCGCCG
ACGGGGATGTCGAGAAGTTTAACAAGTATCGCGCCGCCGAGATCAAGCAC
GGCCGAGTTGCCATGCTTGCCATGCTCCACACCCTGGTGACCGGCCTTGG
CGTGAAGCTGCCGGGCCTCGTGGCCGCTGGCGACGGAATCCCCCAGTCCA
TGCCCTACGGCATTGGCGCTGTCACCTCCGGTGCTTGGGCCGCTCAGGGC
TGGGCGCAGGTGCTCCTGTTCGCGGCCGCCCTCGAGGTGCTTGCCCCCCA
GAAGGAGGACAAGATCCCCGGGGATGTGCAGCCCGACACCTCTGCCTTCG
CCAAGCTGGACGAGAAGTCCGAGGAGGAGGCACTGGCCTACCAGAACAAG
GAGCTCAACAACGGCCGCTTGGCGATGGTCTCGTGGCTCGGAGCCGTCGT
GGGCGCTAGCCTCACCGGTGGCGAGGACCCCGTCGCCACCCTCCTCCACA
AGCTCGGTAACTAAGCCGCAGCCTCTTGGGTGAAGTGTTTTTACCCCCCT
TCTCCTTCACCCCCGCATTCAGATGTGCAGCGTAACCATACCTGCTATAC
ATACCTTGCATCATCTAGAATAACTAGAAGGTCAACGACAATATCTTAAA
ACTGAGATTTTGAACGAAAGAGACTTAACAAACAGTAGGAAATAGGAAGT
AATATGGAAGGGATACAGCTAGTAGCAAATGATTGAGTCTAAGTCCTGTC
GTTTGGTTCGTGCCCGCCCCTCGTTTACATCAAGAAATGAAATTCTCGTC
AGACAGCAGGAGGGAGAACATTCACCGTTAAAAGCGTGTAGCCTTTCCAG
AGATAGAGATGGAAAAGCAAGCGACCTATCAGCCGATGAAATAATTTAAA
AAGAAAAGAAAGAAAAGGTAACGAGGATTCAATCATTACTCTGATCCTAC
CTAGTCGATGAT
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protein sequence of NO09G00450.1

>NO09G00450.1-protein ID=NO09G00450.1-protein|Name=NO09G00450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MKTAALLTVSTLMGAQAFMAPAPKFSRTRGVARMSFEDEAGVTGPLGYWD
PLGLSADGDVEKFNKYRAAEIKHGRVAMLAMLHTLVTGLGVKLPGLVAAG
DGIPQSMPYGIGAVTSGAWAAQGWAQVLLFAAALEVLAPQKEDKIPGDVQ
PDTSAFAKLDEKSEEEALAYQNKELNNGRLAMVSWLGAVVGASLTGGEDP
VATLLHKLGN*
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mRNA from alignment at chr9:193773..196252+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00450.1 ID=NO09G00450.1|Name=NO09G00450.1|organism=Nannochloropsis oceanica|type=mRNA|length=2480bp|location=Sequence derived from alignment at chr9:193773..196252+ (Nannochloropsis oceanica)
GCTGCTGTAGAGGATATGGCATCGGGGGTGGGACACGAGCGGGATGTAAG
TGTTGCGATGTTTTGAGGGGTTTCGTCGGGTATGGTGCGAGTCGTGTGAA
GATGTGGAGCACGTGTGGAAAAGGGCAAGAGAACTGGGCAGAACGTATCT
AGGTTTGAAAGCACTCTTCATACTTGATCGCTGGATACGCAACTCAAGGG
AAAGGTCTCTCGAAAGAACAAGAGCGAGAGCCCAGGCTCCTAGAAGGAAG
AGCAAGGGGAGGTCTGTCCATGTCCAATCAGGTAAAGCACACAAAGAGCG
AAGTACAAGGTATCAGCTCTAGCAACTTGGTCAACTAGCTGGGTTTTCTT
GTGACAGGGAAAGACTGTTGAAGATAGATCAGGGGGCACTTATGGGCTCT
CAAGAGGGTTGAGCTGAGCCTGTTCCCTCGCTCCGCTTTGTCCGACGACA
GAAGGCTTTGCGGGTCTTGCCCTCGGGGATCCTTACTGCAAGGTTGAGGC
GTTGAGCAGACCCCATGGGAGGTCGTTGAGGCTTTCGGCACTAAGACAAG
ATAGGCAAGATGCCCCAATGTCCTGTTACCAACTGGGGTGTGGAAGCACG
CCTGGAGCCTCAAGGGCTCGTTGATAAGGGGATGAAATCGTCCCGGCGAG
CAAATCCTGGTTGACCTCGCAGGATCGTTGAAAAGCAGGAGGCACGTTCG
GCGCGAGCCGGTCTGTTGCAGACGCGTGCCATCTTGTTCCGTCTTGCTTA
CGTTTTGGTTGTTTTGACTACTGCTTGACTCTTTGTCATATGTTTATTTG
GTGCATGTGTTTTCTCCTTCTGTCTTCTGTGCCACTGCACCCCAGCGGTT
CCTGCCCCATGGACAGGACCGCATCGCACCTGCATCCCTGTCCTCTCGTC
AAGCCCCCCATCTCTTCGGCCCGTGGGACAATGAAGGGATGGCAGGGAAG
ATCTTGCTTTGGTATCTCACTCTAAGCACACAATCAAGACAGTCACAGAC
ACGCAGCGAAGGCCTCCACCACACAGCCATTTATCACATGCCCACTTCGC
CCACCTCGCATTGCACTCACGCTCCGCCCTTTCCCTCCCCAAACACTCCA
CACGATAGTCAACTCCACCACTCTCTCAAGTATGAAGACCGCCGCTCTCC
TCACTGTCTCTACCCTTATGGGCGCCCAGGCCTTCATGGCCCCCGCCCCC
AAGTTCTCCCGCACCCGCGGTGTTGCCCGCATGTCCTTCGAGGACGAGGC
GGGTGTGACGGGCCCCTTGGGCTACTGGGTAAGTAGCTCCTCCCTCCTAT
ATCGATTTCCCTCCCTGCCCGACTCTTACCCCCCCATTGCCGCCTCCTTA
AAAAACAGGACCCCCTTGGCCTCTCCGCCGACGGGGATGTCGAGAAGTTT
AACAAGTATCGCGCCGCCGAGATCAAGCACGGCCGAGGTAAGCGTCTTGT
ACACCTTGTATAATGAATCTCCCTGTGATGTTTCCTCGGCCAGTCTGTTT
CCCATGGTCCTCATCGAGAAACACATGTCTTCTTTGTTTTCCTATCTCGT
CTCTTCCTTCACCTCCCACACATTGGCATACCCCACTGACCCTTACCTTC
CTCACCCTTCTCTTCCTTGTCACAGTTGCCATGCTTGCCATGCTCCACAC
CCTGGTGACCGGCCTTGGCGTGAAGCTGCCGGGCCTCGTGGCCGCTGGCG
ACGGAATCCCCCAGTCCATGCCCTACGGCATTGGCGCTGTCACCTCCGGT
GCTTGGGCCGCTCAGGGCTGGGCGCAGGTGCTCCTGTTCGCGGCCGCCCT
CGAGGTGCTTGCCCCCCAGAAGGAGGACAAGATCCCCGGGGATGTGCAGC
CCGACACCTCTGCCTTCGCCAAGCTGGACGAGAAGTCCGAGGAGGAGGCA
CTGGCCTACCAGAACAAGGAGCTCAACAACGGCCGCTTGGCGATGGTCTC
GTGGCTCGGAGCCGTCGTGGGCGCTAGCCTCACCGGTGGCGAGGACCCCG
TCGCCACCCTCCTCCACAAGCTCGGTAACTAAGCCGCAGCCTCTTGGGTG
AAGTGTTTTTACCCCCCTTCTCCTTCACCCCCGCATTCAGATGTGCAGCG
TAACCATACCTGCTATACATACCTTGCATCATCTAGAATAACTAGAAGGT
CAACGACAATATCTTAAAACTGAGATTTTGAACGAAAGAGACTTAACAAA
CAGTAGGAAATAGGAAGTAATATGGAAGGGATACAGCTAGTAGCAAATGA
TTGAGTCTAAGTCCTGTCGTTTGGTTCGTGCCCGCCCCTCGTTTACATCA
AGAAATGAAATTCTCGTCAGACAGCAGGAGGGAGAACATTCACCGTTAAA
AGCGTGTAGCCTTTCCAGAGATAGAGATGGAAAAGCAAGCGACCTATCAG
CCGATGAAATAATTTAAAAAGAAAAGAAAGAAAAGGTAACGAGGATTCAA
TCATTACTCTGATCCTACCTAGTCGATGAT
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Coding sequence (CDS) from alignment at chr9:193773..196252+

>NO09G00450.1 ID=NO09G00450.1|Name=NO09G00450.1|organism=Nannochloropsis oceanica|type=CDS|length=633bp|location=Sequence derived from alignment at chr9:193773..196252+ (Nannochloropsis oceanica)
ATGAAGACCGCCGCTCTCCTCACTGTCTCTACCCTTATGGGCGCCCAGGC
CTTCATGGCCCCCGCCCCCAAGTTCTCCCGCACCCGCGGTGTTGCCCGCA
TGTCCTTCGAGGACGAGGCGGGTGTGACGGGCCCCTTGGGCTACTGGGAC
CCCCTTGGCCTCTCCGCCGACGGGGATGTCGAGAAGTTTAACAAGTATCG
CGCCGCCGAGATCAAGCACGGCCGAGTTGCCATGCTTGCCATGCTCCACA
CCCTGGTGACCGGCCTTGGCGTGAAGCTGCCGGGCCTCGTGGCCGCTGGC
GACGGAATCCCCCAGTCCATGCCCTACGGCATTGGCGCTGTCACCTCCGG
TGCTTGGGCCGCTCAGGGCTGGGCGCAGGTGCTCCTGTTCGCGGCCGCCC
TCGAGGTGCTTGCCCCCCAGAAGGAGGACAAGATCCCCGGGGATGTGCAG
CCCGACACCTCTGCCTTCGCCAAGCTGGACGAGAAGTCCGAGGAGGAGGC
ACTGGCCTACCAGAACAAGGAGCTCAACAACGGCCGCTTGGCGATGGTCT
CGTGGCTCGGAGCCGTCGTGGGCGCTAGCCTCACCGGTGGCGAGGACCCC
GTCGCCACCCTCCTCCACAAGCTCGGTAACTAA
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Synonyms
Publications