NO07G01680.1, NO07G01680.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01680.1
Unique NameNO07G01680.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length612
Alignment locationchr7:507274..508046 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:507274..508046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G01680.1 vs.
Match: SAL95951.1 (hypothetical protein [Absidia glauca])

HSP 1 Score: 72.0 bits (175), Expect = 2.400e-9
Identity = 55/168 (32.74%), Postives = 77/168 (45.83%), Query Frame = 0 
Query:   34 CAIDSPLWQRVRVVTLEENVRIRAAHDAGQDLRIFSNGMRADLLLAVGEGRATPPTPTVGTLHSTPPFPPPQLEFVLPPFMHPPSELNYDPIRLLDHVYGDFNNARNTTKKTLIDRTILNPKNKDVDASNDYAVHSFPGEEMVYLSADRPAQDDNEDARPMDYTIFFI 202
            C I S +WQ V+V+TL EN+R+R  +    D         A +LLAVG G                  PP Q    +P      SE   D   L++ +Y   + A + +      R IL  KN+ VD  N++A  +FPG EMVY S D     D+ DA  M+Y + F+
Sbjct:  273 CIISSYIWQGVKVLTLVENMRVRGTNQEAVDF--------AKMLLAVGNGD-----------------PPYQEHVQIPRHWLLDSE---DVSTLINKIYPSLSLASDPS--FFATRAILTTKNQFVDRINNHATQAFPGAEMVYRSNDCVIDGDDPDADSMNYPVEFL 410
The following BLAST results are available for this feature:
BLAST of NO07G01680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
SAL95951.12.400e-932.74hypothetical protein [Absidia glauca][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01680NO07G01680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01680.1NO07G01680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01680.1.cds1NO07G01680.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01680.1.cds2NO07G01680.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01680.1 ID=NO07G01680.1|Name=NO07G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=612bp
ATGTTGACGATGAAGAGGCAGCTCAGACACACGGAACGGCAGCCGCAAGA
CGCAGAGAAGAACCAGCCACCACGCGTTGCAGGCATAAACACCGTTGTCT
GTGCGATAGATTCCCCTCTCTGGCAACGTGTCCGCGTCGTTACCCTGGAG
GAAAACGTGCGTATCCGTGCGGCGCACGACGCGGGCCAGGATCTTAGGAT
CTTCTCCAATGGTATGCGGGCGGACCTCCTCCTCGCGGTAGGGGAAGGAC
GGGCAACCCCACCCACTCCGACAGTAGGCACCCTCCATTCCACCCCGCCT
TTCCCTCCACCCCAGCTGGAGTTCGTCCTGCCCCCCTTCATGCACCCTCC
GTCAGAGTTGAACTACGACCCCATTAGGCTCCTCGACCACGTCTACGGGG
ACTTCAATAACGCGCGCAATACAACGAAGAAAACTCTCATTGATCGCACC
ATCCTCAACCCCAAGAATAAGGACGTCGACGCCTCGAATGACTACGCCGT
CCATTCTTTCCCCGGAGAAGAGATGGTATACCTCTCAGCAGACAGGCCGG
CGCAGGACGATAACGAGGATGCGCGGCCTATGGATTATACCATTTTTTTT
ATCTTAATGTGA
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protein sequence of NO07G01680.1

>NO07G01680.1-protein ID=NO07G01680.1-protein|Name=NO07G01680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MLTMKRQLRHTERQPQDAEKNQPPRVAGINTVVCAIDSPLWQRVRVVTLE
ENVRIRAAHDAGQDLRIFSNGMRADLLLAVGEGRATPPTPTVGTLHSTPP
FPPPQLEFVLPPFMHPPSELNYDPIRLLDHVYGDFNNARNTTKKTLIDRT
ILNPKNKDVDASNDYAVHSFPGEEMVYLSADRPAQDDNEDARPMDYTIFF
ILM*
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mRNA from alignment at chr7:507274..508046-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01680.1 ID=NO07G01680.1|Name=NO07G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=773bp|location=Sequence derived from alignment at chr7:507274..508046- (Nannochloropsis oceanica)
ATGTTGACGATGAAGAGGCAGCTCAGACACACGGAACGGCAGCCGCAAGA
CGCAGAGAAGAACCAGCCACCACGCGTTGCAGGCATAAACACCGTTGTCT
GTGCGATAGATTCGTGGGTTGGGTTGGGTCAATGAGTGATGGAAAACGCG
ACTGCGTCAGTTGAAGTGTTGAAGTGAACACTACCGAATAACCCCCGGGG
GATCGACGTAAAATCCTCCTAGTGGTCCGAGACGACGACCAAAGTGCTAC
CGTGCGCGCTTCCCCAATTTGTAGCCCTCTCTGGCAACGTGTCCGCGTCG
TTACCCTGGAGGAAAACGTGCGTATCCGTGCGGCGCACGACGCGGGCCAG
GATCTTAGGATCTTCTCCAATGGTATGCGGGCGGACCTCCTCCTCGCGGT
AGGGGAAGGACGGGCAACCCCACCCACTCCGACAGTAGGCACCCTCCATT
CCACCCCGCCTTTCCCTCCACCCCAGCTGGAGTTCGTCCTGCCCCCCTTC
ATGCACCCTCCGTCAGAGTTGAACTACGACCCCATTAGGCTCCTCGACCA
CGTCTACGGGGACTTCAATAACGCGCGCAATACAACGAAGAAAACTCTCA
TTGATCGCACCATCCTCAACCCCAAGAATAAGGACGTCGACGCCTCGAAT
GACTACGCCGTCCATTCTTTCCCCGGAGAAGAGATGGTATACCTCTCAGC
AGACAGGCCGGCGCAGGACGATAACGAGGATGCGCGGCCTATGGATTATA
CCATTTTTTTTATCTTAATGTGA
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Coding sequence (CDS) from alignment at chr7:507274..508046-

>NO07G01680.1 ID=NO07G01680.1|Name=NO07G01680.1|organism=Nannochloropsis oceanica|type=CDS|length=612bp|location=Sequence derived from alignment at chr7:507274..508046- (Nannochloropsis oceanica)
ATGTTGACGATGAAGAGGCAGCTCAGACACACGGAACGGCAGCCGCAAGA
CGCAGAGAAGAACCAGCCACCACGCGTTGCAGGCATAAACACCGTTGTCT
GTGCGATAGATTCCCCTCTCTGGCAACGTGTCCGCGTCGTTACCCTGGAG
GAAAACGTGCGTATCCGTGCGGCGCACGACGCGGGCCAGGATCTTAGGAT
CTTCTCCAATGGTATGCGGGCGGACCTCCTCCTCGCGGTAGGGGAAGGAC
GGGCAACCCCACCCACTCCGACAGTAGGCACCCTCCATTCCACCCCGCCT
TTCCCTCCACCCCAGCTGGAGTTCGTCCTGCCCCCCTTCATGCACCCTCC
GTCAGAGTTGAACTACGACCCCATTAGGCTCCTCGACCACGTCTACGGGG
ACTTCAATAACGCGCGCAATACAACGAAGAAAACTCTCATTGATCGCACC
ATCCTCAACCCCAAGAATAAGGACGTCGACGCCTCGAATGACTACGCCGT
CCATTCTTTCCCCGGAGAAGAGATGGTATACCTCTCAGCAGACAGGCCGG
CGCAGGACGATAACGAGGATGCGCGGCCTATGGATTATACCATTTTTTTT
ATCTTAATGTGA
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Synonyms
Publications