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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:339308..340711 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G01050.1 vs.
Match: EWM27273.1 (actin related protein [Nannochloropsis gaditana]) HSP 1 Score: 634.4 bits (1635), Expect = 2.600e-178 Identity = 316/451 (70.07%), Postives = 361/451 (80.04%), Query Frame = 0
Query: 1 MYVPQDGIDIGAVVAEIGAHAAKLGFAGEDQPRAYFPSHTGYLSPDDSAMDTVPPAK----NNKHTPRKEYKFDLGHNDERLEVHNPLSGGLINDWDMVEQIWQHANKTALSVDFAHTPLLLIERAFAPPKLRHEYVELMFEKFQSPALFMAKDSVLSCFACGKTTGLVVDIGAETSTVAPVQDGWLEAKGLVRSRLGGRMVDRYLLSLLEKNGVVVQPFLRQPPAVGGSRKGGGGEGMSASFREYATLEVVRGLKESVCRMPEVAFSLTDPKFSAAPKVNYELPDGVMVAAGIERFRAAEIYMCPEPAWECLPGAEGEEG-----GEEGGKEED--WSREALPKMVADAVLKCERDQLSPLLNSIVLAGGGACVEGTMERLKSEVETAIYGEGQGGYGRVKVIQAGAQERKICAWLGGSIVASLGSFHEMWVSKAEYAERGAGVIDAKCP 441
MY PQ G+++ AVVAEIG +AA+LGFAGED PR+YFPS G++ PDDS P+ N+K RKEYKFDLGHND R+ VH PLSGGL+ DWDMVEQIWQHANKTAL+VD A TPLLLIERAF KLR EY ELMFEKFQSPALF+AKDSVLSCFACGKT+GLVVDIGAET+TV PVQDGWLEAKGL+RS LGGRMVDRYL + LE +GV + PFL QPP G GEGMSAS+R++ATLEVVRGLKESVCRMPE + + DPK S+ PK NYELPDG +V+AG ERF+AA+I M PEPAWE +P EE GEEGGKE + WSRE+LP+M A AV +CE++Q SPLL+S+VLAGGGAC+EGTMERLK E+E A+YG GQ G RVKV+QAG QERKICAWLGGSIV SLG+FHEMWVSKAEY ERGA V+D KCP
Sbjct: 1 MYQPQGGMEMNAVVAEIGGYAARLGFAGEDYPRSYFPSCAGFIPPDDSTTRATNPSSSKQNNSKQIQRKEYKFDLGHNDSRMNVHTPLSGGLVEDWDMVEQIWQHANKTALTVDLAQTPLLLIERAFNTSKLRQEYAELMFEKFQSPALFLAKDSVLSCFACGKTSGLVVDIGAETTTVGPVQDGWLEAKGLMRSHLGGRMVDRYLRAFLESDGVTIDPFLGQPPVAGT------GEGMSASYRDFATLEVVRGLKESVCRMPEASVTPKDPKDSSVPKANYELPDGTVVSAGWERFQAADILMNPEPAWELMPEGREEEDSMQVDGEEGGKEGEGGWSRESLPRMAATAVRRCEKEQQSPLLSSVVLAGGGACLEGTMERLKVELENAMYGPGQAGSTRVKVLQAGPQERKICAWLGGSIVGSLGTFHEMWVSKAEYGERGARVVDTKCP 445
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G01050.1 ID=NO07G01050.1|Name=NO07G01050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1323bp ATGTATGTCCCCCAAGACGGTATAGATATTGGTGCGGTGGTGGCAGAGAT TGGGGCGCATGCGGCCAAGCTGGGTTTTGCGGGCGAGGACCAACCCCGGG CCTACTTCCCCTCCCATACCGGGTACTTATCACCAGACGACTCCGCAATG GACACGGTCCCGCCCGCCAAAAACAACAAACACACTCCTCGTAAAGAGTA CAAATTTGACTTAGGCCACAATGACGAGCGTCTGGAAGTCCACAATCCGT TGTCGGGCGGTTTGATCAATGACTGGGACATGGTGGAGCAAATCTGGCAG CATGCCAACAAGACTGCCCTCAGCGTAGACTTCGCCCATACTCCTCTTCT CCTTATCGAGCGCGCATTTGCTCCCCCCAAACTCCGCCATGAATACGTCG AGCTCATGTTCGAGAAGTTTCAGTCTCCCGCACTATTCATGGCGAAGGAC AGTGTGCTAAGTTGTTTTGCGTGTGGGAAAACAACGGGGTTAGTGGTGGA TATCGGAGCCGAGACGTCGACCGTTGCCCCCGTTCAAGACGGATGGTTGG AGGCGAAGGGCCTTGTGCGTTCTCGCCTGGGAGGTAGGATGGTGGATCGA TATTTGCTCAGCTTGCTAGAGAAGAATGGCGTTGTAGTCCAGCCCTTCCT GCGGCAACCTCCCGCGGTGGGAGGCTCTCGAAAAGGAGGTGGAGGTGAAG GAATGAGTGCCAGCTTCCGCGAATACGCGACGTTGGAAGTAGTGCGGGGA TTGAAGGAGAGTGTGTGTCGGATGCCAGAGGTTGCATTCTCTCTTACCGA CCCCAAGTTCTCGGCTGCTCCGAAAGTAAATTACGAGCTACCTGATGGAG TAATGGTAGCAGCAGGCATAGAAAGGTTCCGAGCAGCAGAGATCTACATG TGCCCGGAGCCCGCCTGGGAGTGCCTTCCAGGTGCCGAAGGGGAGGAGGG AGGGGAGGAAGGAGGGAAGGAGGAAGATTGGAGTAGGGAGGCGTTGCCGA AGATGGTGGCGGACGCGGTATTGAAGTGTGAGAGAGACCAGCTGTCCCCC TTGCTCAACAGTATAGTGCTTGCCGGAGGGGGAGCATGCGTGGAGGGAAC GATGGAGCGGTTGAAAAGTGAAGTGGAGACGGCAATATATGGGGAGGGGC AGGGAGGGTATGGGCGTGTTAAGGTCATTCAGGCGGGGGCGCAGGAGAGA AAGATATGTGCATGGCTGGGAGGGTCGATAGTCGCTAGCTTGGGTAGCTT CCACGAGATGTGGGTTAGTAAGGCTGAGTATGCAGAGAGGGGGGCTGGGG TAATTGATGCCAAATGTCCATGA back to topprotein sequence of NO07G01050.1 >NO07G01050.1-protein ID=NO07G01050.1-protein|Name=NO07G01050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=441bp MYVPQDGIDIGAVVAEIGAHAAKLGFAGEDQPRAYFPSHTGYLSPDDSAM DTVPPAKNNKHTPRKEYKFDLGHNDERLEVHNPLSGGLINDWDMVEQIWQ HANKTALSVDFAHTPLLLIERAFAPPKLRHEYVELMFEKFQSPALFMAKD SVLSCFACGKTTGLVVDIGAETSTVAPVQDGWLEAKGLVRSRLGGRMVDR YLLSLLEKNGVVVQPFLRQPPAVGGSRKGGGGEGMSASFREYATLEVVRG LKESVCRMPEVAFSLTDPKFSAAPKVNYELPDGVMVAAGIERFRAAEIYM CPEPAWECLPGAEGEEGGEEGGKEEDWSREALPKMVADAVLKCERDQLSP LLNSIVLAGGGACVEGTMERLKSEVETAIYGEGQGGYGRVKVIQAGAQER KICAWLGGSIVASLGSFHEMWVSKAEYAERGAGVIDAKCP* back to topmRNA from alignment at chr7:339308..340711- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G01050.1 ID=NO07G01050.1|Name=NO07G01050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1404bp|location=Sequence derived from alignment at chr7:339308..340711- (Nannochloropsis oceanica) ATGTATGTCCCCCAAGGTAAGCAGCCAGCCACGATGACAAAAGCAATGCG
GAGGCTAGCCGCTCATGACGATCAAACACACCGCTCTACCACATCAGACG
GTATAGATATTGGTGCGGTGGTGGCAGAGATTGGGGCGCATGCGGCCAAG
CTGGGTTTTGCGGGCGAGGACCAACCCCGGGCCTACTTCCCCTCCCATAC
CGGGTACTTATCACCAGACGACTCCGCAATGGACACGGTCCCGCCCGCCA
AAAACAACAAACACACTCCTCGTAAAGAGTACAAATTTGACTTAGGCCAC
AATGACGAGCGTCTGGAAGTCCACAATCCGTTGTCGGGCGGTTTGATCAA
TGACTGGGACATGGTGGAGCAAATCTGGCAGCATGCCAACAAGACTGCCC
TCAGCGTAGACTTCGCCCATACTCCTCTTCTCCTTATCGAGCGCGCATTT
GCTCCCCCCAAACTCCGCCATGAATACGTCGAGCTCATGTTCGAGAAGTT
TCAGTCTCCCGCACTATTCATGGCGAAGGACAGTGTGCTAAGTTGTTTTG
CGTGTGGGAAAACAACGGGGTTAGTGGTGGATATCGGAGCCGAGACGTCG
ACCGTTGCCCCCGTTCAAGACGGATGGTTGGAGGCGAAGGGCCTTGTGCG
TTCTCGCCTGGGAGGTAGGATGGTGGATCGATATTTGCTCAGCTTGCTAG
AGAAGAATGGCGTTGTAGTCCAGCCCTTCCTGCGGCAACCTCCCGCGGTG
GGAGGCTCTCGAAAAGGAGGTGGAGGTGAAGGAATGAGTGCCAGCTTCCG
CGAATACGCGACGTTGGAAGTAGTGCGGGGATTGAAGGAGAGTGTGTGTC
GGATGCCAGAGGTTGCATTCTCTCTTACCGACCCCAAGTTCTCGGCTGCT
CCGAAAGTAAATTACGAGCTACCTGATGGAGTAATGGTAGCAGCAGGCAT
AGAAAGGTTCCGAGCAGCAGAGATCTACATGTGCCCGGAGCCCGCCTGGG
AGTGCCTTCCAGGTGCCGAAGGGGAGGAGGGAGGGGAGGAAGGAGGGAAG
GAGGAAGATTGGAGTAGGGAGGCGTTGCCGAAGATGGTGGCGGACGCGGT
ATTGAAGTGTGAGAGAGACCAGCTGTCCCCCTTGCTCAACAGTATAGTGC
TTGCCGGAGGGGGAGCATGCGTGGAGGGAACGATGGAGCGGTTGAAAAGT
GAAGTGGAGACGGCAATATATGGGGAGGGGCAGGGAGGGTATGGGCGTGT
TAAGGTCATTCAGGCGGGGGCGCAGGAGAGAAAGATATGTGCATGGCTGG
GAGGGTCGATAGTCGCTAGCTTGGGTAGCTTCCACGAGATGTGGGTTAGT
AAGGCTGAGTATGCAGAGAGGGGGGCTGGGGTAATTGATGCCAAATGTCC
ATGA back to topCoding sequence (CDS) from alignment at chr7:339308..340711- >NO07G01050.1 ID=NO07G01050.1|Name=NO07G01050.1|organism=Nannochloropsis oceanica|type=CDS|length=1323bp|location=Sequence derived from alignment at chr7:339308..340711- (Nannochloropsis oceanica) ATGTATGTCCCCCAAGACGGTATAGATATTGGTGCGGTGGTGGCAGAGAT TGGGGCGCATGCGGCCAAGCTGGGTTTTGCGGGCGAGGACCAACCCCGGG CCTACTTCCCCTCCCATACCGGGTACTTATCACCAGACGACTCCGCAATG GACACGGTCCCGCCCGCCAAAAACAACAAACACACTCCTCGTAAAGAGTA CAAATTTGACTTAGGCCACAATGACGAGCGTCTGGAAGTCCACAATCCGT TGTCGGGCGGTTTGATCAATGACTGGGACATGGTGGAGCAAATCTGGCAG CATGCCAACAAGACTGCCCTCAGCGTAGACTTCGCCCATACTCCTCTTCT CCTTATCGAGCGCGCATTTGCTCCCCCCAAACTCCGCCATGAATACGTCG AGCTCATGTTCGAGAAGTTTCAGTCTCCCGCACTATTCATGGCGAAGGAC AGTGTGCTAAGTTGTTTTGCGTGTGGGAAAACAACGGGGTTAGTGGTGGA TATCGGAGCCGAGACGTCGACCGTTGCCCCCGTTCAAGACGGATGGTTGG AGGCGAAGGGCCTTGTGCGTTCTCGCCTGGGAGGTAGGATGGTGGATCGA TATTTGCTCAGCTTGCTAGAGAAGAATGGCGTTGTAGTCCAGCCCTTCCT GCGGCAACCTCCCGCGGTGGGAGGCTCTCGAAAAGGAGGTGGAGGTGAAG GAATGAGTGCCAGCTTCCGCGAATACGCGACGTTGGAAGTAGTGCGGGGA TTGAAGGAGAGTGTGTGTCGGATGCCAGAGGTTGCATTCTCTCTTACCGA CCCCAAGTTCTCGGCTGCTCCGAAAGTAAATTACGAGCTACCTGATGGAG TAATGGTAGCAGCAGGCATAGAAAGGTTCCGAGCAGCAGAGATCTACATG TGCCCGGAGCCCGCCTGGGAGTGCCTTCCAGGTGCCGAAGGGGAGGAGGG AGGGGAGGAAGGAGGGAAGGAGGAAGATTGGAGTAGGGAGGCGTTGCCGA AGATGGTGGCGGACGCGGTATTGAAGTGTGAGAGAGACCAGCTGTCCCCC TTGCTCAACAGTATAGTGCTTGCCGGAGGGGGAGCATGCGTGGAGGGAAC GATGGAGCGGTTGAAAAGTGAAGTGGAGACGGCAATATATGGGGAGGGGC AGGGAGGGTATGGGCGTGTTAAGGTCATTCAGGCGGGGGCGCAGGAGAGA AAGATATGTGCATGGCTGGGAGGGTCGATAGTCGCTAGCTTGGGTAGCTT CCACGAGATGTGGGTTAGTAAGGCTGAGTATGCAGAGAGGGGGGCTGGGG TAATTGATGCCAAATGTCCATGA back to top
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