NO06G04290.1, NO06G04290.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G04290.1
Unique NameNO06G04290.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1636
Alignment locationchr6:1204664..1206554 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1204664..1206554 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G04290.1 vs.
Match: EWM26454.1 (hypothetical protein Naga_100144g13 [Nannochloropsis gaditana])

HSP 1 Score: 556.2 bits (1432), Expect = 8.100e-155
Identity = 259/344 (75.29%), Postives = 294/344 (85.47%), Query Frame = 0 
Query:   53 RSPLSLTSIPSARTPLPCLWQIRSDQQHTEDYFRFIEGKEAPEKVDQPSVIIGKGKLGQALAEWSTFGKDDVLVDRGETIPLTLTAANGTVYESFPIYVCVHEWQVEEVILACPKEKRNDLVFMQSACLENLLKKYGLCNKKTTQCVPYFSVSPLGLPIDGRVQYDVSKTDGEPKYAGQTSVCGLWRGAVAERLKKKGLHVVTMDYMYWRKQMLERLLFDSVFGLLACVHAGSGEKTYGELAQNHWEEIDDILSELNRAVANIMAVVLLTHVDRRLRGLAEGPSWRDKRPRMATAQEYPYRNGVLRSLSRTFTSRGFPSPMATHDEYLNFAKERKLVLYDVDME 397
            RSP     +P +R  L  LWQIRSDQQHTEDYFRFIEGKE P+K DQ SVIIGKGKLGQAL +W   G+DD+L+ R + IP  LT +NG     FPIYVCV EW+VE VIL CPKEKRNDLVFMQSACLE LLK+YGL NKKTTQC+PYFS+SP GLP++GRVQYDVSKTDGEPK+AGQT VCG WRGAVAERL+K+ LHV  MDY YWRK MLERLLFDS+FGLLACVHA SGEKTYGELAQNHWEEIDD++ EL+RA+ANIMAVVLLTHV+RR+RGLAEGP WRD++P+M T +EYP+RNG+LRSLSR+FTSRGFPSPM THDEYL+F +ERKLV YDVD +
Sbjct:   57 RSPCPHEDLPHSRKSLVRLWQIRSDQQHTEDYFRFIEGKEEPDKCDQASVIIGKGKLGQALVQWGGMGEDDLLLGRDDCIPTVLTVSNGCTLNMFPIYVCVPEWEVESVILGCPKEKRNDLVFMQSACLETLLKRYGLANKKTTQCLPYFSISPFGLPVEGRVQYDVSKTDGEPKFAGQTVVCGTWRGAVAERLRKQDLHVEVMDYTYWRKHMLERLLFDSLFGLLACVHADSGEKTYGELAQNHWEEIDDMVWELSRAIANIMAVVLLTHVERRVRGLAEGPHWRDRKPQMPTCREYPFRNGMLRSLSRSFTSRGFPSPMPTHDEYLDFVRERKLVSYDVDQD 400
The following BLAST results are available for this feature:
BLAST of NO06G04290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26454.18.100e-15575.29hypothetical protein Naga_100144g13 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G04290NO06G04290Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G04290.1NO06G04290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G04290.1.cds1NO06G04290.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04290.1.cds2NO06G04290.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G04290.1 ID=NO06G04290.1|Name=NO06G04290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1636bp
CGACAATATGCTCCAGCACACGACAAGAATCTACACATGCATGCACGAAG
TACGGCTTTTAAAATATTGATGCGTGTCACACAGTGTGTGGTGGTATACT
TATTGACAAACAAAGACGTGGAACCAGGAGGGATGGGTCCTTGAAGGCCC
ATCGGAGGGACTGGCGATGCCGCATGCGTATCTTACGATGCATGGCAGTA
ATCGCGACGCAGATACACACAACACACATTTCCATGCATGATTGGACAGG
TAACATTAAAAACTAAGCGACGGACTGCAATAAATAGGAGGGAGTGCAAG
CATTGAGTCGAGGAAATGACGCCGCCGCAGCAGCATCAGCATCACTGGCC
GTCGTCGTTGCAGTTGCTTCTTCTCCTTTCAAGTGCCCATGCTTTTATCC
CGGCTCATGCTCCCACTGCTCCTGTGACAGCTTTCTTCACATCTACTACG
GTCATCTCCAGCCTTTCTTCCCGATCCCCCCTCTCTCTAACCTCCATCCC
CTCTGCCCGCACGCCCCTCCCTTGCCTCTGGCAAATTCGCTCCGACCAAC
AGCACACCGAAGACTACTTCCGCTTTATCGAAGGCAAAGAGGCCCCGGAG
AAGGTTGATCAGCCCAGTGTCATTATCGGCAAGGGCAAGTTGGGTCAAGC
ACTAGCTGAGTGGAGCACCTTCGGAAAAGATGACGTGCTTGTGGACCGTG
GGGAAACCATTCCACTCACACTTACGGCCGCCAACGGCACTGTTTACGAG
AGCTTCCCGATCTATGTGTGTGTGCATGAGTGGCAAGTAGAGGAGGTGAT
CTTAGCGTGTCCCAAGGAAAAGAGAAATGACCTGGTGTTCATGCAGTCTG
CATGCCTAGAAAATCTCCTGAAGAAGTATGGCCTATGCAACAAAAAGACC
ACACAATGCGTCCCCTACTTCTCTGTGTCCCCTCTTGGCCTTCCCATAGA
TGGCCGAGTGCAGTACGACGTGAGCAAGACGGATGGCGAGCCGAAGTACG
CGGGGCAGACGTCTGTGTGTGGCCTATGGCGCGGGGCGGTCGCCGAGCGA
CTCAAGAAGAAGGGGCTGCATGTGGTCACGATGGATTACATGTACTGGCG
GAAGCAGATGTTGGAGCGCTTATTGTTCGATAGTGTGTTTGGCCTCCTGG
CGTGCGTGCATGCGGGCTCGGGGGAGAAGACGTACGGCGAGCTGGCCCAA
AACCACTGGGAGGAGATCGACGACATACTCTCAGAGCTAAATCGCGCTGT
AGCAAACATCATGGCGGTCGTTTTGCTCACACATGTGGACCGACGCCTGC
GGGGACTGGCGGAGGGGCCCAGTTGGCGGGACAAGAGGCCTCGAATGGCC
ACGGCGCAGGAGTACCCTTATCGAAACGGTGTGCTGCGGTCGTTGAGTAG
GACCTTTACGTCGCGCGGCTTTCCCTCCCCCATGGCCACCCACGACGAGT
ACCTGAACTTCGCCAAGGAGCGAAAGCTAGTGTTGTACGATGTGGACATG
GAGCGCTAGGATGGGAGCTGTTGAAGGGAGGCAGTAGGGTGCTTTGTTTT
ATAGGGGAGGAGAGGGGAGTGAATGGCGAGACGGAAATAGAAATCATTGG
GCGCAGAAAGCACAACCTTTGAATGTTTATGGCAAC
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protein sequence of NO06G04290.1

>NO06G04290.1-protein ID=NO06G04290.1-protein|Name=NO06G04290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=398bp
MTPPQQHQHHWPSSLQLLLLLSSAHAFIPAHAPTAPVTAFFTSTTVISSL
SSRSPLSLTSIPSARTPLPCLWQIRSDQQHTEDYFRFIEGKEAPEKVDQP
SVIIGKGKLGQALAEWSTFGKDDVLVDRGETIPLTLTAANGTVYESFPIY
VCVHEWQVEEVILACPKEKRNDLVFMQSACLENLLKKYGLCNKKTTQCVP
YFSVSPLGLPIDGRVQYDVSKTDGEPKYAGQTSVCGLWRGAVAERLKKKG
LHVVTMDYMYWRKQMLERLLFDSVFGLLACVHAGSGEKTYGELAQNHWEE
IDDILSELNRAVANIMAVVLLTHVDRRLRGLAEGPSWRDKRPRMATAQEY
PYRNGVLRSLSRTFTSRGFPSPMATHDEYLNFAKERKLVLYDVDMER*
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mRNA from alignment at chr6:1204664..1206554-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G04290.1 ID=NO06G04290.1|Name=NO06G04290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1891bp|location=Sequence derived from alignment at chr6:1204664..1206554- (Nannochloropsis oceanica)
CGACAATATGCTCCAGCACACGACAAGAATCTACACATGCATGCACGAAG
TACGGCTTTTAAAATATTGATGCGTGTCACACAGTGTGTGGTGGTATACT
TATTGACAAACAAAGACGTGGAACCAGGAGGGATGGGTCCTTGAAGGCCC
ATCGGAGGGACTGGCGATGCCGCATGCGTATCTTACGATGCATGGCAGTA
ATCGCGACGCAGATACACACAACACACATTTCCATGCATGATTGGACAGG
TAACATTAAAAACTAAGCGACGGACTGCAATAAATAGGAGGGAGTGCAAG
CATTGAGTCGAGGAAATGACGCCGCCGCAGCAGCATCAGCATCACTGGCC
GTCGTCGTTGCAGTTGCTTCTTCTCCTTTCAAGTGCCCATGCTTTTATCC
CGGCTCATGCTCCCACTGCTCCTGTGACAGCTTTCTTCACATCTACTACG
GTCATCTCCAGCCTTTCTTCCCGATCCCCCCTCTCTCTAACCTCCATCCC
CTCTGCCCGCACGCCCCTCCCTTGCCTCTGGCAAATTCGCTCCGACCAAC
AGCACACCGAAGACTACTTCCGCTTTATCGAAGGCAAAGAGGTGTGTTCA
TGTGCTAGAACCGAGCGTAGAGATAAAGAAGGAAGGAGCAAGCCCCTTCC
ACGTGCCTCTGCTGCCAATTTGCCAATTTGGTCGTCGCTTTTAAAGAGAG
CGAGCTATCCATTTAGTGCCCCTCCTGTCTAGACCTCTTTTGTTGTTCAT
CGTCCGTTCTCTCCTCCAAGAGACATCTCAGACCACTGCCTTGCAAAATG
TTCACTTTCGTCTCTCATTCTCTTCCTTTTTTCTCTCCATCCTTAGGCCC
CGGAGAAGGTTGATCAGCCCAGTGTCATTATCGGCAAGGGCAAGTTGGGT
CAAGCACTAGCTGAGTGGAGCACCTTCGGAAAAGATGACGTGCTTGTGGA
CCGTGGGGAAACCATTCCACTCACACTTACGGCCGCCAACGGCACTGTTT
ACGAGAGCTTCCCGATCTATGTGTGTGTGCATGAGTGGCAAGTAGAGGAG
GTGATCTTAGCGTGTCCCAAGGAAAAGAGAAATGACCTGGTGTTCATGCA
GTCTGCATGCCTAGAAAATCTCCTGAAGAAGTATGGCCTATGCAACAAAA
AGACCACACAATGCGTCCCCTACTTCTCTGTGTCCCCTCTTGGCCTTCCC
ATAGATGGCCGAGTGCAGTACGACGTGAGCAAGACGGATGGCGAGCCGAA
GTACGCGGGGCAGACGTCTGTGTGTGGCCTATGGCGCGGGGCGGTCGCCG
AGCGACTCAAGAAGAAGGGGCTGCATGTGGTCACGATGGATTACATGTAC
TGGCGGAAGCAGATGTTGGAGCGCTTATTGTTCGATAGTGTGTTTGGCCT
CCTGGCGTGCGTGCATGCGGGCTCGGGGGAGAAGACGTACGGCGAGCTGG
CCCAAAACCACTGGGAGGAGATCGACGACATACTCTCAGAGCTAAATCGC
GCTGTAGCAAACATCATGGCGGTCGTTTTGCTCACACATGTGGACCGACG
CCTGCGGGGACTGGCGGAGGGGCCCAGTTGGCGGGACAAGAGGCCTCGAA
TGGCCACGGCGCAGGAGTACCCTTATCGAAACGGTGTGCTGCGGTCGTTG
AGTAGGACCTTTACGTCGCGCGGCTTTCCCTCCCCCATGGCCACCCACGA
CGAGTACCTGAACTTCGCCAAGGAGCGAAAGCTAGTGTTGTACGATGTGG
ACATGGAGCGCTAGGATGGGAGCTGTTGAAGGGAGGCAGTAGGGTGCTTT
GTTTTATAGGGGAGGAGAGGGGAGTGAATGGCGAGACGGAAATAGAAATC
ATTGGGCGCAGAAAGCACAACCTTTGAATGTTTATGGCAAC
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Coding sequence (CDS) from alignment at chr6:1204664..1206554-

>NO06G04290.1 ID=NO06G04290.1|Name=NO06G04290.1|organism=Nannochloropsis oceanica|type=CDS|length=1194bp|location=Sequence derived from alignment at chr6:1204664..1206554- (Nannochloropsis oceanica)
ATGACGCCGCCGCAGCAGCATCAGCATCACTGGCCGTCGTCGTTGCAGTT
GCTTCTTCTCCTTTCAAGTGCCCATGCTTTTATCCCGGCTCATGCTCCCA
CTGCTCCTGTGACAGCTTTCTTCACATCTACTACGGTCATCTCCAGCCTT
TCTTCCCGATCCCCCCTCTCTCTAACCTCCATCCCCTCTGCCCGCACGCC
CCTCCCTTGCCTCTGGCAAATTCGCTCCGACCAACAGCACACCGAAGACT
ACTTCCGCTTTATCGAAGGCAAAGAGGCCCCGGAGAAGGTTGATCAGCCC
AGTGTCATTATCGGCAAGGGCAAGTTGGGTCAAGCACTAGCTGAGTGGAG
CACCTTCGGAAAAGATGACGTGCTTGTGGACCGTGGGGAAACCATTCCAC
TCACACTTACGGCCGCCAACGGCACTGTTTACGAGAGCTTCCCGATCTAT
GTGTGTGTGCATGAGTGGCAAGTAGAGGAGGTGATCTTAGCGTGTCCCAA
GGAAAAGAGAAATGACCTGGTGTTCATGCAGTCTGCATGCCTAGAAAATC
TCCTGAAGAAGTATGGCCTATGCAACAAAAAGACCACACAATGCGTCCCC
TACTTCTCTGTGTCCCCTCTTGGCCTTCCCATAGATGGCCGAGTGCAGTA
CGACGTGAGCAAGACGGATGGCGAGCCGAAGTACGCGGGGCAGACGTCTG
TGTGTGGCCTATGGCGCGGGGCGGTCGCCGAGCGACTCAAGAAGAAGGGG
CTGCATGTGGTCACGATGGATTACATGTACTGGCGGAAGCAGATGTTGGA
GCGCTTATTGTTCGATAGTGTGTTTGGCCTCCTGGCGTGCGTGCATGCGG
GCTCGGGGGAGAAGACGTACGGCGAGCTGGCCCAAAACCACTGGGAGGAG
ATCGACGACATACTCTCAGAGCTAAATCGCGCTGTAGCAAACATCATGGC
GGTCGTTTTGCTCACACATGTGGACCGACGCCTGCGGGGACTGGCGGAGG
GGCCCAGTTGGCGGGACAAGAGGCCTCGAATGGCCACGGCGCAGGAGTAC
CCTTATCGAAACGGTGTGCTGCGGTCGTTGAGTAGGACCTTTACGTCGCG
CGGCTTTCCCTCCCCCATGGCCACCCACGACGAGTACCTGAACTTCGCCA
AGGAGCGAAAGCTAGTGTTGTACGATGTGGACATGGAGCGCTAG
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Synonyms
Publications