NO03G05580.1, NO03G05580.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G05580.1
Unique NameNO03G05580.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1835
Alignment locationchr3:1600581..1602870 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1600581..1602870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G05580.1 vs.
Match: EWM30025.1 (cation-transporting atpase [Nannochloropsis gaditana])

HSP 1 Score: 279.6 bits (714), Expect = 2.100e-71
Identity = 162/259 (62.55%), Postives = 189/259 (72.97%), Query Frame = 0 
Query:    1 MTFMSSTTAFLLAWSSTGVIGLFLICDGMFSASA-TPSHGQAFSNLYNPSTAFGFVLAGTLLFLLALPPLYAHFCSSPT--KRPCPSNLPPLPSPFAEVAARAGEG--EEGRDDS-HGALPPLSLDDAIDALQVDVAHGLYSTVARERLYQCGPNEVSPPNAPSYLHIFLDELYEGPQLLLMAVGVAYALLGSMEEACTALVVVLLMINAEIVTEFRAKRAMARLQSTVPKIAAVLRDEGQEMEIPAVTVVPGDIVILR 254
            M F S     LL W + G+IG+ L+ DG++SA A  P H   F   YN    FG +LAG LL L++LPPL+++F  S    KR  P  L PLP  FAEV ARAGEG  E+ R  S H  LP LSLD AI  L  DV+HGLYS  AR RL QCGPNEVS  +APSYL IFL ELYEGPQLLLM VGVAYAL+GS+ E+CTALVV+ LMINAEI+TE+RAKRA++RLQSTVPK+AAVLRDEGQEME+ A TVVPGD+V+LR
Sbjct:    1 MFFFSFPATTLLTWGAAGLIGVLLLADGLYSALAPVPLHSSLF---YNKHMVFGLILAGVLLILISLPPLHSYFRESNVGGKRSLPP-LAPLPPQFAEVVARAGEGGGEQSRQGSAHPTLPLLSLDAAIHILGADVSHGLYSVEARARLLQCGPNEVSTSDAPSYLSIFLKELYEGPQLLLMVVGVAYALVGSVHESCTALVVIFLMINAEIITEYRAKRALSRLQSTVPKLAAVLRDEGQEMEVAAATVVPGDLVVLR 255
The following BLAST results are available for this feature:
BLAST of NO03G05580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30025.12.100e-7162.55cation-transporting atpase [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05580NO03G05580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G05580.1NO03G05580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G05580.1.cds1NO03G05580.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05580.1.cds2NO03G05580.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05580.1.cds3NO03G05580.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05580.1.cds4NO03G05580.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G05580.1 ID=NO03G05580.1|Name=NO03G05580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1835bp
AACACAGGCCGCTGCACACGACGCACGGCCGCAGGTCATCATCCTAGCGC
GTTTATTACCCCGACAAGGCACACCCAACATCATCCTCCTTCGACTCACT
ACTCTACGCAGAAAGCGCCATGACTTTCATGTCCTCCACGACCGCTTTTC
TCTTGGCCTGGAGCTCGACGGGTGTAATTGGCCTTTTCCTGATCTGTGAC
GGAATGTTCAGTGCCTCAGCGACTCCTTCCCATGGCCAAGCCTTCTCCAA
CCTGTACAACCCCTCCACCGCCTTCGGCTTTGTTCTAGCCGGCACACTAC
TTTTTCTTCTTGCCCTTCCCCCGCTCTATGCTCACTTTTGTAGTAGTCCT
ACCAAACGCCCCTGTCCTTCAAACCTGCCTCCTCTTCCCTCTCCGTTCGC
CGAGGTGGCTGCCCGAGCAGGGGAAGGGGAAGAGGGACGCGATGATAGTC
ACGGAGCCCTCCCTCCTCTGTCTTTGGACGACGCTATCGATGCCTTGCAA
GTAGATGTTGCCCATGGGTTGTACTCTACCGTAGCAAGGGAACGCCTATA
CCAGTGCGGGCCAAACGAGGTCAGCCCGCCTAACGCCCCTTCCTACCTGC
ACATATTTCTCGACGAGCTATATGAGGGCCCCCAACTCCTGCTAATGGCG
GTGGGGGTGGCATATGCATTACTGGGTTCGATGGAAGAAGCGTGCACAGC
GCTGGTGGTGGTGCTTTTGATGATAAATGCGGAAATAGTCACGGAGTTTC
GGGCCAAGCGGGCTATGGCCAGGCTGCAGTCCACGGTTCCCAAAATTGCT
GCCGTCCTCCGGGACGAGGGCCAGGAGATGGAGATTCCTGCCGTCACAGT
CGTGCCTGGTGATATCGTCATTCTGAGGGCGGGTCAAGCCGTGCCTGCGG
ACATCTTAATCCTCTCCGCCTCCTCCTTAGAGATCGACGAGGCGGCCATC
ACGGGCGAAAGCATTCCTAACCACAAAAAAGCAGGGGCTCGAGGAGGAGA
AGGAGGAGGAGGAAGGGAGGGAAGGAACGAGGAAGTGGATGGTGGGGTTC
CTCGAGCAGGATCATTCACACCGCCTGCACTGTCGGTGGTGGTCATGGGA
GGGCCCTCGCAAGAGGAGGAGGAGGAGGAGAGGAGGAGGGGCGGAGGGAA
GGCGGGAGGGGGGGAAAATGTACTGATTAGCGAGCAAAAAGCGTACGGAG
GTACGATGGTCACGCGCGGGAAAGGCCTCGGGCTCGTGACTCGCATCGGA
AGGCATACCTACCTCGGTAGCCTCCTCCTTAAGTCCCGCCGACTCGCCCC
TCCTCGCAGTCCTCTTCAGATCCATCTCCGTGCCCTGGCTGCCCGCCTTA
CCGTGTTCGCCCTCCTGGCCTCCTGCTTCGCCGCTTTCATCGGTGCGGCC
CGCAGCAGCAGCAGCAATCGCAGCAACGTGGGTGGGCCATCTACGAGCTG
GAAAACGACTCTTCTCACCGCGCTCTCCCTTTGCTTTGCCCTTATCCCTG
AGGAGCTGCCCCTCCTTATGGTGGGCGTGCTTGCAGTGGGTGCTCTGACC
CTTAGCCGGAGAGGCATCTACGTGAAGAGTTTGGCTGCCCAGGAGGCCTT
GGCCTATGTAGACGTGGTTCTGGCGGATAAGACCGGCACGCTGACTGAGA
ACAGGTTGAGTCTCGCGGAGATCACTTTGCCGTCGGCGATGGCGGGGGTG
GAGGAGGAGGAAGAAGAGGAAGCCGAGGAGCAGGCGGTGGGGGAGGGGGA
GGGAGGGGGGGATCGCCGGGGGAGAAGGAGGGGAGGAGGAGGAGGAGGAG
GGAGAAGAAGATGCTCAGAGAGGAGGGGGATCTAG
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protein sequence of NO03G05580.1

>NO03G05580.1-protein ID=NO03G05580.1-protein|Name=NO03G05580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=572bp
MTFMSSTTAFLLAWSSTGVIGLFLICDGMFSASATPSHGQAFSNLYNPST
AFGFVLAGTLLFLLALPPLYAHFCSSPTKRPCPSNLPPLPSPFAEVAARA
GEGEEGRDDSHGALPPLSLDDAIDALQVDVAHGLYSTVARERLYQCGPNE
VSPPNAPSYLHIFLDELYEGPQLLLMAVGVAYALLGSMEEACTALVVVLL
MINAEIVTEFRAKRAMARLQSTVPKIAAVLRDEGQEMEIPAVTVVPGDIV
ILRAGQAVPADILILSASSLEIDEAAITGESIPNHKKAGARGGEGGGGRE
GRNEEVDGGVPRAGSFTPPALSVVVMGGPSQEEEEEERRRGGGKAGGGEN
VLISEQKAYGGTMVTRGKGLGLVTRIGRHTYLGSLLLKSRRLAPPRSPLQ
IHLRALAARLTVFALLASCFAAFIGAARSSSSNRSNVGGPSTSWKTTLLT
ALSLCFALIPEELPLLMVGVLAVGALTLSRRGIYVKSLAAQEALAYVDVV
LADKTGTLTENRLSLAEITLPSAMAGVEEEEEEEAEEQAVGEGEGGGDRR
GRRRGGGGGGGRRRCSERRGI*
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mRNA from alignment at chr3:1600581..1602870+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05580.1 ID=NO03G05580.1|Name=NO03G05580.1|organism=Nannochloropsis oceanica|type=mRNA|length=2290bp|location=Sequence derived from alignment at chr3:1600581..1602870+ (Nannochloropsis oceanica)
AACACAGGCCGCTGCACACGACGCACGGCCGCAGGTCATCATCCTAGCGC
GTTTATTACCCCGACAAGGCACACCCAACATCATCCTCCTTCGACTCACT
ACTCTACGCAGAAAGCGCCATGACTTTCATGTCCTCCACGACCGCTTTTC
TCTTGGCCTGGAGCTCGACGGGTGTAATTGGCCTTTTCCTGATCTGTGAC
GGAATGTTCAGTGCCTCAGCGACTCCTTCCCATGGCCAAGCCTTCTCCAA
CCTGTACAACCCCTCCACCGCCTTCGGCTTTGTTCTAGCCGGCACACTAC
TTTTTCTTCTTGCCCTTCCCCCGCTCTATGCTCACTTTTGTAGTAGTCCT
ACCAAACGCCCCTGTCCTTCAAACCTGCCTCCTCTTCCCTCTCCGTTCGC
CGAGGTGGCTGCCCGAGCAGGGGAAGGGGAAGAGGGACGCGATGATAGTC
ACGGAGCCCTCCCTCCTCTGTCTTTGGACGACGCTATCGATGCCTTGCAA
GTAGATGTTGCCCATGGGTTGTACTCTACCGTAGCAAGGGAACGCCTATA
CCAGTGCGGGCCAAACGAGGTCAGCCCGCCTAACGCCCCTTCCTACCTGC
ACATATTTCTCGACGAGCTATATGAGGGCCCCCAACTCCTGCTAATGGCG
GTGGGGGTGGCATATGCATTACTGGGTTCGATGGAAGAAGCGTGCACAGC
GCTGGTGGTGGTGCTTTTGATGATAAATGCGGAAATAGTCACGGAGTTTC
GGGCCAAGCGGGCTATGGCCAGGCTGCAGTCCACGGTGAGGGAGGAGTGG
AGGGAAGGGAGGGAGGGAAGAGGGGAGAAATATTACCCGACGTGCCCGTT
CTTCTTCTCCTTCATCTTATTTTTCTTTTTATCTTTATCCACCACGCACA
CAAACTTCCATTTCCACCCATTCTGACTTGGTTGTTCCCCCCCTCCCACA
GGTTCCCAAAATTGCTGCCGTCCTCCGGGACGAGGGCCAGGAGATGGAGA
TTCCTGCCGTCACAGTCGTGCCTGGTGATATCGTCATTCTGAGGTATATA
GGCAGATATATAGATATAAACGTATATTTACAGATGGGTATCACATGTAT
ATTCACCTGCTTGCCCTCGGTTCCCTCTTTTCATTCTTCTTCCCTCATCT
TATTACTAGACCATCACTCCTCACTCTCCTCCTCGTTTTACCCCCTTACC
CCCCTATTCTCCCTAGGGCGGGTCAAGCCGTGCCTGCGGACATCTTAATC
CTCTCCGCCTCCTCCTTAGAGATCGACGAGGCGGCCATCACGGGCGAAAG
CATTCCTAACCACAAAAAAGCAGGGGCTCGAGGAGGAGAAGGAGGAGGAG
GAAGGGAGGGAAGGAACGAGGAAGTGGATGGTGGGGTTCCTCGAGCAGGA
TCATTCACACCGCCTGCACTGTCGGTGGTGGTCATGGGAGGGCCCTCGCA
AGAGGAGGAGGAGGAGGAGAGGAGGAGGGGCGGAGGGAAGGCGGGAGGGG
GGGAAAATGTACTGATTAGCGAGCAAAAAGCGTACGGAGGTACGTGAGGC
TGAGGAGATTGTCACATGCACGAGTCATCAACTCCATCCACCCACCCCTT
TCGCGCCACTTTTCCGTCCGTCCCTCCCTCCCTCCCTCCCTCCTTTGCCT
TCCAGGTACGATGGTCACGCGCGGGAAAGGCCTCGGGCTCGTGACTCGCA
TCGGAAGGCATACCTACCTCGGTAGCCTCCTCCTTAAGTCCCGCCGACTC
GCCCCTCCTCGCAGTCCTCTTCAGATCCATCTCCGTGCCCTGGCTGCCCG
CCTTACCGTGTTCGCCCTCCTGGCCTCCTGCTTCGCCGCTTTCATCGGTG
CGGCCCGCAGCAGCAGCAGCAATCGCAGCAACGTGGGTGGGCCATCTACG
AGCTGGAAAACGACTCTTCTCACCGCGCTCTCCCTTTGCTTTGCCCTTAT
CCCTGAGGAGCTGCCCCTCCTTATGGTGGGCGTGCTTGCAGTGGGTGCTC
TGACCCTTAGCCGGAGAGGCATCTACGTGAAGAGTTTGGCTGCCCAGGAG
GCCTTGGCCTATGTAGACGTGGTTCTGGCGGATAAGACCGGCACGCTGAC
TGAGAACAGGTTGAGTCTCGCGGAGATCACTTTGCCGTCGGCGATGGCGG
GGGTGGAGGAGGAGGAAGAAGAGGAAGCCGAGGAGCAGGCGGTGGGGGAG
GGGGAGGGAGGGGGGGATCGCCGGGGGAGAAGGAGGGGAGGAGGAGGAGG
AGGAGGGAGAAGAAGATGCTCAGAGAGGAGGGGGATCTAG
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Coding sequence (CDS) from alignment at chr3:1600581..1602870+

>NO03G05580.1 ID=NO03G05580.1|Name=NO03G05580.1|organism=Nannochloropsis oceanica|type=CDS|length=1716bp|location=Sequence derived from alignment at chr3:1600581..1602870+ (Nannochloropsis oceanica)
ATGACTTTCATGTCCTCCACGACCGCTTTTCTCTTGGCCTGGAGCTCGAC
GGGTGTAATTGGCCTTTTCCTGATCTGTGACGGAATGTTCAGTGCCTCAG
CGACTCCTTCCCATGGCCAAGCCTTCTCCAACCTGTACAACCCCTCCACC
GCCTTCGGCTTTGTTCTAGCCGGCACACTACTTTTTCTTCTTGCCCTTCC
CCCGCTCTATGCTCACTTTTGTAGTAGTCCTACCAAACGCCCCTGTCCTT
CAAACCTGCCTCCTCTTCCCTCTCCGTTCGCCGAGGTGGCTGCCCGAGCA
GGGGAAGGGGAAGAGGGACGCGATGATAGTCACGGAGCCCTCCCTCCTCT
GTCTTTGGACGACGCTATCGATGCCTTGCAAGTAGATGTTGCCCATGGGT
TGTACTCTACCGTAGCAAGGGAACGCCTATACCAGTGCGGGCCAAACGAG
GTCAGCCCGCCTAACGCCCCTTCCTACCTGCACATATTTCTCGACGAGCT
ATATGAGGGCCCCCAACTCCTGCTAATGGCGGTGGGGGTGGCATATGCAT
TACTGGGTTCGATGGAAGAAGCGTGCACAGCGCTGGTGGTGGTGCTTTTG
ATGATAAATGCGGAAATAGTCACGGAGTTTCGGGCCAAGCGGGCTATGGC
CAGGCTGCAGTCCACGGTTCCCAAAATTGCTGCCGTCCTCCGGGACGAGG
GCCAGGAGATGGAGATTCCTGCCGTCACAGTCGTGCCTGGTGATATCGTC
ATTCTGAGGGCGGGTCAAGCCGTGCCTGCGGACATCTTAATCCTCTCCGC
CTCCTCCTTAGAGATCGACGAGGCGGCCATCACGGGCGAAAGCATTCCTA
ACCACAAAAAAGCAGGGGCTCGAGGAGGAGAAGGAGGAGGAGGAAGGGAG
GGAAGGAACGAGGAAGTGGATGGTGGGGTTCCTCGAGCAGGATCATTCAC
ACCGCCTGCACTGTCGGTGGTGGTCATGGGAGGGCCCTCGCAAGAGGAGG
AGGAGGAGGAGAGGAGGAGGGGCGGAGGGAAGGCGGGAGGGGGGGAAAAT
GTACTGATTAGCGAGCAAAAAGCGTACGGAGGTACGATGGTCACGCGCGG
GAAAGGCCTCGGGCTCGTGACTCGCATCGGAAGGCATACCTACCTCGGTA
GCCTCCTCCTTAAGTCCCGCCGACTCGCCCCTCCTCGCAGTCCTCTTCAG
ATCCATCTCCGTGCCCTGGCTGCCCGCCTTACCGTGTTCGCCCTCCTGGC
CTCCTGCTTCGCCGCTTTCATCGGTGCGGCCCGCAGCAGCAGCAGCAATC
GCAGCAACGTGGGTGGGCCATCTACGAGCTGGAAAACGACTCTTCTCACC
GCGCTCTCCCTTTGCTTTGCCCTTATCCCTGAGGAGCTGCCCCTCCTTAT
GGTGGGCGTGCTTGCAGTGGGTGCTCTGACCCTTAGCCGGAGAGGCATCT
ACGTGAAGAGTTTGGCTGCCCAGGAGGCCTTGGCCTATGTAGACGTGGTT
CTGGCGGATAAGACCGGCACGCTGACTGAGAACAGGTTGAGTCTCGCGGA
GATCACTTTGCCGTCGGCGATGGCGGGGGTGGAGGAGGAGGAAGAAGAGG
AAGCCGAGGAGCAGGCGGTGGGGGAGGGGGAGGGAGGGGGGGATCGCCGG
GGGAGAAGGAGGGGAGGAGGAGGAGGAGGAGGGAGAAGAAGATGCTCAGA
GAGGAGGGGGATCTAG
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Synonyms
Publications