NO03G04960.1, NO03G04960.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04960.1
Unique NameNO03G04960.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1913
Alignment locationchr3:1411486..1413876 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1411486..1413876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G04960.1 vs.
Match: XP_005853867.1 (glyoxalase domain-containing 4-like protein [Nannochloropsis gaditana CCMP526]; EKU22488.1 glyoxalase domain-containing 4-like protein [Nannochloropsis gaditana CCMP526]; EWM29934.1 glyoxalase domain-containing protein 4 [Nannochloropsis gaditana])

HSP 1 Score: 779.6 bits (2012), Expect = 6.000e-222
Identity = 380/479 (79.33%), Postives = 423/479 (88.31%), Query Frame = 0 
Query:   54 LLAATQLLATT-TLAFRPALFAPVALHHRSSVSSIRTSTTISMATTTLSSKEPAKFSTKDYRRPLHWVFKVGDLKKTLAFYEQGFGMHVHRHEEFASGCEATCNGPYGGCWSKTMVGWGKEDEQFALELTFNYGIDSYKFGNDLRHIAVDSKAWKGPEKEVVVEKGEGGVKRRFVVSPDGYRYLLVDTGSEEVPSEPFLFVSVHVADVEKSKKYYVDVLDANIRASGPGAEEGNENVMVGFDRAGTGVCLELVQLPGGGKVDHALASGRFATETEDGAPEKVGDKVKKAGGDILHGPLKLQPHGEEVVIVADPDGYEFCFVDARGYTNCINVREDAEGTTVDWPYREKLEKAARSGKNAKLEVAKVVAGDYDVKSIKGKMEGFLKAHPVVVFAQATCPFCSKAKALLKEVGAKFEVVEVDAMEGKEGSAMRVELDKVTGRSTVPNIFIGGKPVGGFTDGIEKLHQEGKLVPLLKEAGAV 532
            L  ATQLL TT TLAFRPALFAPV    R S++  RT  T++MAT    +KEP K++TKDYRRPLHWVFKVGDL KTLAFYE+GFGMHVHRHEEFASGCEATCNGPYGGCWSKTMVGWGKEDEQFALELT NYGIDSYK GND RHIAVD+KAW+GP  +V VE G     RR+V SPDGY YLLVDTGS  VPSEPFLFVS+HVADV +S++YYVDVL A +R  GPGAE G ++VMVGFD+AGTGVCLELVQLPGGG+VDHALASGRFATETEDGAP+KVG +V++AGGD+LHGPLKLQPHGEEVVIVADPDGYEFCFVDARGYTNCINVR+ AEGTTVDWPYRE+LEKAARS +N KLEVAKV+AGDYDVK I G ++G+++ HPVVVFAQ TCPFC KAK LL EVGAK+EVVEVDAMEGK+G A+RVELDKVTGRSTVPNIFIGGKPVGGF+DG+E+LH+ GKLVPLLKEAGA+
Sbjct:    7 LFVATQLLTTTSTLAFRPALFAPVISRPRVSINGFRTCKTLTMATKA-PAKEPTKWTTKDYRRPLHWVFKVGDLAKTLAFYEEGFGMHVHRHEEFASGCEATCNGPYGGCWSKTMVGWGKEDEQFALELTCNYGIDSYKAGNDFRHIAVDAKAWRGPASQVKVEDG-----RRYVKSPDGYSYLLVDTGSASVPSEPFLFVSIHVADVPRSQQYYVDVLGATVRPGGPGAETGAQSVMVGFDQAGTGVCLELVQLPGGGQVDHALASGRFATETEDGAPDKVGARVQEAGGDVLHGPLKLQPHGEEVVIVADPDGYEFCFVDARGYTNCINVRDSAEGTTVDWPYRERLEKAARSKENPKLEVAKVLAGDYDVKRICGMLDGWVERHPVVVFAQVTCPFCKKAKELLSEVGAKYEVVEVDAMEGKDGFAIRVELDKVTGRSTVPNIFIGGKPVGGFSDGVEELHKNGKLVPLLKEAGAL 479
The following BLAST results are available for this feature:
BLAST of NO03G04960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853867.16.000e-22279.33glyoxalase domain-containing 4-like protein [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04960NO03G04960Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04960.1NO03G04960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04960.1.cds1NO03G04960.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04960.1.cds2NO03G04960.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04960.1.cds3NO03G04960.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04960.1.cds4NO03G04960.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04960.1 ID=NO03G04960.1|Name=NO03G04960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1913bp
TGTTGCCTCAAAAAGCAGCGAGTTCCAGATCGTTGCGCTTGCCATCGCCC
GTCTCGGTGAACCTACGCTATTTTGGCATGGCACAGGCAATGCTTGATAA
ACTCTCGCACTGTGTGGGTAAAACCACGTTGTCCGCAAGTATTCATGGCT
TCTTTTGGACCAGAATTAGGTCGGTTGATTGCTTGACCTCCCCCCTCCTC
CCTATTCCAACAAGAATGCAAGCTCGTCGTGCATTCCTCCTGGCCGCCAC
GCAGCTTCTTGCCACCACCACGCTTGCATTCCGTCCGGCACTCTTCGCAC
CTGTTGCCTTGCACCACCGCAGTAGTGTCAGCAGCATCAGGACGAGCACC
ACCATCAGCATGGCTACGACTACTCTCTCTTCCAAGGAGCCCGCCAAATT
TAGCACTAAGGACTACAGGCGGCCCCTGCATTGGGTCTTCAAAGTCGGCG
ACCTCAAGAAAACCCTCGCCTTCTACGAACAAGGTTTCGGGATGCACGTC
CACAGACACGAAGAATTCGCTTCAGGCTGCGAAGCGACTTGCAATGGCCC
GTATGGTGGATGTTGGAGTAAGACCATGGTAGGATGGGGGAAGGAGGATG
AGCAGTTTGCCCTTGAATTGACCTTCAATTATGGGATTGATTCATATAAG
TTTGGAAACGACTTGCGGCATATCGCCGTGGACAGCAAGGCATGGAAAGG
CCCGGAGAAGGAGGTAGTGGTGGAGAAGGGAGAGGGCGGGGTAAAGCGAC
GGTTTGTCGTCAGTCCGGATGGGTATAGATATTTGTTGGTTGATACGGGG
AGTGAGGAGGTGCCGAGCGAGCCTTTCCTGTTTGTGTCGGTGCACGTGGC
CGATGTCGAGAAGAGCAAGAAGTACTATGTGGATGTATTGGATGCGAATA
TCCGCGCCTCGGGCCCAGGGGCGGAGGAAGGGAACGAGAACGTAATGGTA
GGTTTTGACAGAGCGGGGACAGGGGTGTGTTTGGAACTGGTTCAGCTACC
CGGAGGTGGAAAGGTGGATCACGCCCTGGCCTCGGGGAGGTTTGCGACTG
AGACGGAGGACGGAGCACCGGAAAAGGTGGGGGACAAAGTCAAAAAGGCA
GGCGGGGATATCTTGCATGGCCCCCTCAAGCTGCAGCCCCACGGGGAGGA
GGTGGTGATTGTCGCCGATCCAGACGGCTACGAATTCTGCTTTGTCGACG
CCAGGGGGTATACCAATTGTATCAATGTCCGGGAGGACGCAGAGGGCACG
ACAGTGGACTGGCCCTACCGAGAGAAGCTGGAGAAGGCGGCGCGCAGTGG
GAAAAATGCCAAGCTTGAGGTGGCTAAGGTCGTCGCGGGGGACTATGACG
TCAAGTCGATTAAGGGGAAGATGGAGGGTTTCTTGAAGGCGCATCCGGTG
GTGGTGTTCGCACAGGCGACCTGCCCGTTCTGTTCCAAGGCCAAGGCGTT
GCTGAAGGAGGTGGGGGCAAAATTTGAGGTGGTGGAGGTGGATGCGATGG
AGGGAAAGGAGGGGTCTGCGATGAGGGTGGAGCTGGACAAGGTCACAGGG
AGGAGTACGGTGCCCAACATTTTCATCGGGGGCAAGCCCGTGGGTGGTTT
TACGGATGGGATCGAAAAGTTGCACCAGGAAGGAAAATTGGTGCCATTGT
TGAAGGAAGCTGGGGCAGTGTAATGGAAGAATTGTGGGAAGAAGGCTGCT
TGAAAATCATGCATGAACGTGGTTCGATACTTAAATGGGATGGGACGAAG
GGGTGAGACGAAGGGAAGATCAAGTCTGTGTGGGGACATAGGAGAATTAC
GTCGAGGAGTAAGAAGAAATAATAAACATTACGTGGACCGTGTAAATTGT
AACTCTCGACTCTTCTCTCTTCGGACATTGGCTTGGACGATATGAACTTT
TACCGCCCGTCGT
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protein sequence of NO03G04960.1

>NO03G04960.1-protein ID=NO03G04960.1-protein|Name=NO03G04960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=532bp
MAQAMLDKLSHCVGKTTLSASIHGFFWTRIRSVDCLTSPLLPIPTRMQAR
RAFLLAATQLLATTTLAFRPALFAPVALHHRSSVSSIRTSTTISMATTTL
SSKEPAKFSTKDYRRPLHWVFKVGDLKKTLAFYEQGFGMHVHRHEEFASG
CEATCNGPYGGCWSKTMVGWGKEDEQFALELTFNYGIDSYKFGNDLRHIA
VDSKAWKGPEKEVVVEKGEGGVKRRFVVSPDGYRYLLVDTGSEEVPSEPF
LFVSVHVADVEKSKKYYVDVLDANIRASGPGAEEGNENVMVGFDRAGTGV
CLELVQLPGGGKVDHALASGRFATETEDGAPEKVGDKVKKAGGDILHGPL
KLQPHGEEVVIVADPDGYEFCFVDARGYTNCINVREDAEGTTVDWPYREK
LEKAARSGKNAKLEVAKVVAGDYDVKSIKGKMEGFLKAHPVVVFAQATCP
FCSKAKALLKEVGAKFEVVEVDAMEGKEGSAMRVELDKVTGRSTVPNIFI
GGKPVGGFTDGIEKLHQEGKLVPLLKEAGAV*
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mRNA from alignment at chr3:1411486..1413876+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04960.1 ID=NO03G04960.1|Name=NO03G04960.1|organism=Nannochloropsis oceanica|type=mRNA|length=2391bp|location=Sequence derived from alignment at chr3:1411486..1413876+ (Nannochloropsis oceanica)
TGTTGCCTCAAAAAGCAGCGAGTTCCAGATCGTTGCGCTTGCCATCGCCC
GTCTCGGTGAACCTACGCTATTTTGGCATGGCACAGGCAATGCTTGATAA
ACTCTCGCACTGTGTGGGTAAAACCACGTTGTCCGCAAGTATTCATGGCT
TCTTTTGGACCAGAATTAGGTCGGTTGATTGCTTGACCTCCCCCCTCCTC
CCTATTCCAACAAGAATGCAAGCTCGTCGTGCATTCCTCCTGGCCGCCAC
GCAGCTTCTTGCCACCACCACGCTTGCATTCCGTCCGGCACTCTTCGCAC
CTGTTGCCTTGCACCACCGCAGTAGTGTCAGCAGCATCAGGTACATAGGA
GTTGGGAAAGATGCATGATACATTGCCCACACAATTAAGCTTCTGGAACC
CGATATTAAGCTACAAAGTCCGTCTCAAACGCAACAGGACGAGCACCACC
ATCAGCATGGCTACGACTACTCTCTCTTCCAAGGAGCCCGCCAAATTTAG
CACTAAGGACTACAGGGTATGTACTCAAGGTGTGCTCGGCCAAGCCTCCC
TTCCCCCCCTCCTTTCCTGTCCTTCCGTCTCTTTCAGCAATGTGCACGGC
ACCCGACACTCTGATGTCAGGCATTGCCAATGCTTTGGAACACATGACAG
TGGTTGGGACTGCATTGCAATATGTAATGATTGACATTACTCATGCCATC
TTTCCCTCCCTTTCTCCTCCCTCATCGCCAAATAGCGGCCCCTGCATTGG
GTCTTCAAAGTCGGCGACCTCAAGAAAACCCTCGCCTTCTACGAACAAGG
TTTCGGGATGCACGTCCACAGACACGAAGAATTCGCTTCAGGCTGCGAAG
CGACTTGCAATGGCCCGTATGGTGGATGTTGGAGTAAGACCATGGTAGGA
TGGGGGAAGGAGGATGAGCAGTTTGCCCTTGAATTGACCTTCAATTATGG
GATTGATTCATATAAGTTTGGAAACGACTTGCGGCATATCGCCGTGGACA
GCAAGGCATGGAAAGGCCCGGAGAAGGAGGTAGTGGTGGAGAAGGGAGAG
GGCGGGGTAAAGCGACGGTTTGTCGTCAGTCCGGATGGGTATAGATATTT
GTTGGTTGATACGGGGAGTGAGGAGGTGCCGAGCGAGCCTTTCCTGTTTG
TGTCGGTGCACGTGGCCGATGTCGAGAAGAGCAAGAAGTACTATGTGGAT
GTATTGGATGCGAATATCCGCGCCTCGGGCCCAGGGGCGGAGGAAGGGAA
CGAGAACGTAATGGTAGGTTTTGACAGAGCGGGGACAGGGGTGTGTTTGG
AACTGGTTCAGCTACCCGGAGGTGGAAAGGTGGATCACGCCCTGGCCTCG
GGGAGGTTTGCGACTGAGACGGAGGACGGAGCACCGGAAAAGGTGGGGGA
CAAAGTCAAAAAGGCAGGCGGGGATATCTTGCATGGCCCCCTCAAGCTGC
AGCCCCACGGGGAGGAGGTGGTGATTGTCGCCGATCCAGACGGCTACGAA
TTCTGCTTTGTCGACGCCAGGGGGTATACCAATTGTATCAATGTCCGGGA
GGACGCAGAGGGCACGACAGTGGACTGGCCCTACCGAGAGAAGCTGGAGA
AGGCGGCGCGCAGTGGGAAAAATGCCAAGCTTGAGGTGGCTAAGGTCGTC
GCGGGGGACTATGACGTCAAGTCGATTAAGGGGAAGATGGAGGGTTTCTT
GAAGGCGCATCCGGTGGTGGTGTTCGCACAGGCGACCTGCCCGTTCTGTT
CCAAGGCCAAGGCGTTGCTGAAGGAGGTGGGGGCAAAATTTGAGGTGGTG
GAGGTGGATGCGATGGAGGGAAAGGAGGGGTCTGCGATGAGGGTGGAGCT
GGACAAGGTCACAGGGAGGAGTACGGTACGTTTTGAGGCGGGAGGGTGGA
GGGAAGGGTAAAGACGGTGGCAGTCGGTTTGGAAATGCTTGGGCCTCGTT
TTAAATCAAGTTCACTTAATGCTTCAAACTTCAACTTCAAATTACCTTCT
GTAAACATCATATTTTCCTATTTTCCTCTTCGCTCAGGTGCCCAACATTT
TCATCGGGGGCAAGCCCGTGGGTGGTTTTACGGATGGGATCGAAAAGTTG
CACCAGGAAGGAAAATTGGTGCCATTGTTGAAGGAAGCTGGGGCAGTGTA
ATGGAAGAATTGTGGGAAGAAGGCTGCTTGAAAATCATGCATGAACGTGG
TTCGATACTTAAATGGGATGGGACGAAGGGGTGAGACGAAGGGAAGATCA
AGTCTGTGTGGGGACATAGGAGAATTACGTCGAGGAGTAAGAAGAAATAA
TAAACATTACGTGGACCGTGTAAATTGTAACTCTCGACTCTTCTCTCTTC
GGACATTGGCTTGGACGATATGAACTTTTACCGCCCGTCGT
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Coding sequence (CDS) from alignment at chr3:1411486..1413876+

>NO03G04960.1 ID=NO03G04960.1|Name=NO03G04960.1|organism=Nannochloropsis oceanica|type=CDS|length=1596bp|location=Sequence derived from alignment at chr3:1411486..1413876+ (Nannochloropsis oceanica)
ATGGCACAGGCAATGCTTGATAAACTCTCGCACTGTGTGGGTAAAACCAC
GTTGTCCGCAAGTATTCATGGCTTCTTTTGGACCAGAATTAGGTCGGTTG
ATTGCTTGACCTCCCCCCTCCTCCCTATTCCAACAAGAATGCAAGCTCGT
CGTGCATTCCTCCTGGCCGCCACGCAGCTTCTTGCCACCACCACGCTTGC
ATTCCGTCCGGCACTCTTCGCACCTGTTGCCTTGCACCACCGCAGTAGTG
TCAGCAGCATCAGGACGAGCACCACCATCAGCATGGCTACGACTACTCTC
TCTTCCAAGGAGCCCGCCAAATTTAGCACTAAGGACTACAGGCGGCCCCT
GCATTGGGTCTTCAAAGTCGGCGACCTCAAGAAAACCCTCGCCTTCTACG
AACAAGGTTTCGGGATGCACGTCCACAGACACGAAGAATTCGCTTCAGGC
TGCGAAGCGACTTGCAATGGCCCGTATGGTGGATGTTGGAGTAAGACCAT
GGTAGGATGGGGGAAGGAGGATGAGCAGTTTGCCCTTGAATTGACCTTCA
ATTATGGGATTGATTCATATAAGTTTGGAAACGACTTGCGGCATATCGCC
GTGGACAGCAAGGCATGGAAAGGCCCGGAGAAGGAGGTAGTGGTGGAGAA
GGGAGAGGGCGGGGTAAAGCGACGGTTTGTCGTCAGTCCGGATGGGTATA
GATATTTGTTGGTTGATACGGGGAGTGAGGAGGTGCCGAGCGAGCCTTTC
CTGTTTGTGTCGGTGCACGTGGCCGATGTCGAGAAGAGCAAGAAGTACTA
TGTGGATGTATTGGATGCGAATATCCGCGCCTCGGGCCCAGGGGCGGAGG
AAGGGAACGAGAACGTAATGGTAGGTTTTGACAGAGCGGGGACAGGGGTG
TGTTTGGAACTGGTTCAGCTACCCGGAGGTGGAAAGGTGGATCACGCCCT
GGCCTCGGGGAGGTTTGCGACTGAGACGGAGGACGGAGCACCGGAAAAGG
TGGGGGACAAAGTCAAAAAGGCAGGCGGGGATATCTTGCATGGCCCCCTC
AAGCTGCAGCCCCACGGGGAGGAGGTGGTGATTGTCGCCGATCCAGACGG
CTACGAATTCTGCTTTGTCGACGCCAGGGGGTATACCAATTGTATCAATG
TCCGGGAGGACGCAGAGGGCACGACAGTGGACTGGCCCTACCGAGAGAAG
CTGGAGAAGGCGGCGCGCAGTGGGAAAAATGCCAAGCTTGAGGTGGCTAA
GGTCGTCGCGGGGGACTATGACGTCAAGTCGATTAAGGGGAAGATGGAGG
GTTTCTTGAAGGCGCATCCGGTGGTGGTGTTCGCACAGGCGACCTGCCCG
TTCTGTTCCAAGGCCAAGGCGTTGCTGAAGGAGGTGGGGGCAAAATTTGA
GGTGGTGGAGGTGGATGCGATGGAGGGAAAGGAGGGGTCTGCGATGAGGG
TGGAGCTGGACAAGGTCACAGGGAGGAGTACGGTGCCCAACATTTTCATC
GGGGGCAAGCCCGTGGGTGGTTTTACGGATGGGATCGAAAAGTTGCACCA
GGAAGGAAAATTGGTGCCATTGTTGAAGGAAGCTGGGGCAGTGTAA
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Synonyms
Publications