NO03G00750.1, NO03G00750.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00750.1
Unique NameNO03G00750.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2125
Alignment locationchr3:243442..246084 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:243442..246084 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G00750.1 vs.
Match: EWM29617.1 (Bestrophin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 526.2 bits (1354), Expect = 1.200e-145
Identity = 279/416 (67.07%), Postives = 315/416 (75.72%), Query Frame = 0 
Query:   34 IYRRIGGFFPSFPTTPPLLLLLFLLPFCLSLHRAIPSAFLGPSHTCFVARHRSPCPTPPFHNFHVVTAATSLPTRRTHTRARGDATFLLDPPQRYQSSDWVENLQSLLDSRIAKRISGHLWFNTAWAGAVTALFEFMPQWHIDAYISPLPHQLMSSALGLLLVFRTNAAYDRFWEARKVWGSVTNNCRNLARTGRIALDRKYHARFSMLVISFSVTLRAHLQRVVVSTELEALLPSWEADQVRMNSCPPALIAMKLTHLINEAVGKNEQRSDFYALYLEQLVGELINCLGMAERILLTPVPASYSRHTSRFLSLYTFTLPFVLVHELEYFTVPAIGAICWTLFSIEEIGHLIEEPFSATSKQLPLRRMTTTIARDVRSLLQTKDGMDFDTLLDEDLLSTEDRILAENAPQSTKVQS 450
            + RR      S P    +L+   L+ FCL +  A   A + P H    +  R      P HN H   +           RA+   T LLDPPQRY+SSDW ENL+SL DSRI KRISGHL FNTAWA  VT ++E MPQWHI + ISP+PHQLMS+ALGLLLVFRTNAAYDRFWEARKVWGSVTN CRNLARTGRIALD++YHARFSML+I+F+VTLRAHLQR +VSTELE LLPSWEADQVRM++CPPAL+ MKLT+LINEAV  NE RSDFYALYLEQLVG+L+NCLGMAERILLTPVPASYSRHTSRFLSLYT TLPFVLVH+LE FT P +G +CW LFSIEEIGHLIEEPF A++KQLPL  MT TIARDV+ LL  K G D    LDE+LLS +D  LAEN PQS    S
Sbjct:   62 VRRRRRRAMSSVPPRGQVLVAAHLVFFCL-VSCASSIALIFPFHAASSSFTRQHVMFRP-HNCHSNPSVNHFVNHIGCRRAKSHVTALLDPPQRYKSSDWAENLRSLFDSRIVKRISGHLLFNTAWATGVTGVYESMPQWHIGSDISPVPHQLMSTALGLLLVFRTNAAYDRFWEARKVWGSVTNICRNLARTGRIALDQRYHARFSMLIIAFAVTLRAHLQRNIVSTELETLLPSWEADQVRMDTCPPALVCMKLTYLINEAVSHNEARSDFYALYLEQLVGDLVNCLGMAERILLTPVPASYSRHTSRFLSLYTLTLPFVLVHQLEIFTAPVLGIVCWGLFSIEEIGHLIEEPFCASTKQLPLISMTETIARDVKHLLGLKAGFDVTFPLDENLLSPDDWKLAENGPQSALASS 475
The following BLAST results are available for this feature:
BLAST of NO03G00750.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29617.11.200e-14567.07Bestrophin-like protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00750NO03G00750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00750.1NO03G00750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00750.1.cds1NO03G00750.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00750.1.cds2NO03G00750.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00750.1.cds3NO03G00750.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00750.1.cds4NO03G00750.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00750.1 ID=NO03G00750.1|Name=NO03G00750.1|organism=Nannochloropsis oceanica|type=mRNA|length=2125bp
CTCTGCCTGAAACCTAAATTCAACTACAATTCACTTGCACAACACACAAG
CTACACACAGCACAATCTCTCTTCCAATGCAATTCAGCGAAAAGCCAACA
CAAATAAAGCGGTAGATTTCCTGCGAGCTTCGTTTTCAAGAAGTGTCTCG
CCGGCGCTTCGGCATCATAACAGATCCTCCGCATGCGCTGGCCGCGTTTT
TGCCTCTCGACTAATGAGTCCCATCCTTCCGCAGGCACAAAGCAAACCCA
CATCCAAAGCCACCCGACAGGTGTACCTTTATCTGCCTGCTGCGATTTCC
TTGCTCGACAATTGTTACCACTCCGGCGCCGCCCACACCAGGAGTTATTA
TCCTTAGCACGAAAGAGGTACGAGCACCCTCAAAAATAAGCCGGCCGCAA
CCCCAAGCACCATGACAACAACAGGAACATCAGCCATGGATAGTGCAGAC
ACGACGGCTCACGCAAGAGCCAGGAGAAGAAAATCACGCAGCACTCATGG
CAGCAGCAGCATTTATCGGAGAATAGGAGGTTTCTTCCCCTCCTTTCCTA
CCACCCCTCCCCTTCTGCTCCTCCTCTTCCTCCTCCCCTTCTGCCTTTCC
CTCCATCGTGCCATCCCTTCAGCCTTCCTTGGCCCCAGCCACACTTGTTT
CGTGGCTCGCCACCGCTCTCCATGTCCAACACCTCCCTTTCATAACTTTC
ACGTCGTCACTGCCGCCACCTCCCTCCCCACACGGCGCACCCACACCCGC
GCCCGCGGCGACGCTACCTTCCTCCTCGATCCGCCCCAGCGATACCAATC
TTCGGATTGGGTCGAAAATTTGCAGTCTTTGCTCGACTCTCGGATTGCCA
AGCGAATATCAGGTCACCTGTGGTTCAATACAGCGTGGGCAGGGGCGGTA
ACGGCGCTGTTTGAATTCATGCCCCAGTGGCACATTGATGCTTATATTTC
CCCTCTTCCGCATCAGCTGATGTCCTCGGCTCTGGGGCTGTTGTTGGTGT
TTCGGACCAACGCCGCCTACGACCGATTTTGGGAAGCTCGAAAAGTGTGG
GGCAGCGTCACCAATAACTGCAGGAATTTGGCGCGAACAGGCCGCATAGC
CCTTGATCGGAAATACCACGCCCGATTCTCCATGTTGGTCATCTCCTTCT
CCGTCACCCTGCGGGCACACCTGCAGAGGGTTGTGGTGTCCACAGAATTG
GAAGCACTGCTTCCTTCGTGGGAAGCGGACCAGGTGAGGATGAATTCCTG
CCCGCCTGCACTGATTGCCATGAAGTTAACGCACCTGATCAACGAAGCCG
TGGGGAAGAACGAGCAGCGGTCGGACTTCTACGCTCTTTATCTAGAGCAA
CTCGTGGGAGAGCTCATAAATTGCCTAGGCATGGCAGAGCGTATCCTCTT
GACGCCTGTTCCGGCCTCCTACTCTAGACACACCTCTCGATTCCTCTCAC
TCTACACCTTCACGCTCCCCTTCGTCCTCGTCCATGAGCTGGAGTATTTT
ACCGTTCCCGCCATTGGCGCGATCTGCTGGACGCTCTTTTCAATCGAGGA
AATTGGACACCTCATCGAAGAGCCTTTCTCCGCCACTAGCAAGCAACTTC
CCCTCAGGCGCATGACCACCACCATCGCCCGCGACGTCCGCTCTCTGCTC
CAAACCAAGGACGGGATGGACTTTGACACCCTTCTTGACGAAGACTTGCT
CTCAACGGAAGACAGAATCCTGGCCGAAAACGCCCCTCAATCGACCAAAG
TGCAGTCCTTCGTTCCTTCCCTCGCGGCCCCTTCGATCTGGGGTCCTGGG
AAAGGGGATGAAACGAAGGAAGACATGGAGGGGGACGAGCAGGGGGGGAA
GCGAAGAGGAGGGGTTGGTGGGAGGGAGGACATTTTTTGGAAAAAAAAGC
AATGGGCCAGCCACGGCGGCCTCGGCGGCGGCGACACTGCAGTCGACTGA
GAGGATGAATATATAACGTGGTGGTGAATGAAAAATGATGGGAAGTGAGG
GGAGGAAGATGCAAGAGGGATTGAGGAAGAGGGAGCGTAGCGACTTAGTG
ATTGACATGTGATAAAGAAACGAGGAACAAGGCGTGTATGTGCGTGCGTG
CGTGTGTGTGTGTGTGTGTGTGTGT
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protein sequence of NO03G00750.1

>NO03G00750.1-protein ID=NO03G00750.1-protein|Name=NO03G00750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=513bp
MTTTGTSAMDSADTTAHARARRRKSRSTHGSSSIYRRIGGFFPSFPTTPP
LLLLLFLLPFCLSLHRAIPSAFLGPSHTCFVARHRSPCPTPPFHNFHVVT
AATSLPTRRTHTRARGDATFLLDPPQRYQSSDWVENLQSLLDSRIAKRIS
GHLWFNTAWAGAVTALFEFMPQWHIDAYISPLPHQLMSSALGLLLVFRTN
AAYDRFWEARKVWGSVTNNCRNLARTGRIALDRKYHARFSMLVISFSVTL
RAHLQRVVVSTELEALLPSWEADQVRMNSCPPALIAMKLTHLINEAVGKN
EQRSDFYALYLEQLVGELINCLGMAERILLTPVPASYSRHTSRFLSLYTF
TLPFVLVHELEYFTVPAIGAICWTLFSIEEIGHLIEEPFSATSKQLPLRR
MTTTIARDVRSLLQTKDGMDFDTLLDEDLLSTEDRILAENAPQSTKVQSF
VPSLAAPSIWGPGKGDETKEDMEGDEQGGKRRGGVGGREDIFWKKKQWAS
HGGLGGGDTAVD*
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mRNA from alignment at chr3:243442..246084+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00750.1 ID=NO03G00750.1|Name=NO03G00750.1|organism=Nannochloropsis oceanica|type=mRNA|length=2643bp|location=Sequence derived from alignment at chr3:243442..246084+ (Nannochloropsis oceanica)
CTCTGCCTGAAACCTAAATTCAACTACAATTCACTTGCACAACACACAAG
CTACACACAGCACAATCTCTCTTCCAATGCAATTCAGCGAAAAGCCAACA
CAAATAAAGCGGTAGATTTCCTGCGAGCTTCGTTTTCAAGAAGTGTCTCG
CCGGCGCTTCGGCATCATAACAGATCCTCCGCATGCGCTGGCCGCGTTTT
TGCCTCTCGACTAATGAGTCCCATCCTTCCGCAGGCACAAAGCAAACCCA
CATCCAAAGCCACCCGACAGGTGTACCTTTATCTGCCTGCTGCGATTTCC
TTGCTCGACAATTGTTACCACTCCGGCGCCGCCCACACCAGGAGTTATTA
TCCTTAGCACGAAAGAGGTACGAGCACCCTCAAAAATAAGCCGGCCGCAA
CCCCAAGCACCATGACAACAACAGGAACATCAGCCATGGATAGTGCAGAC
ACGACGGCTCACGCAAGAGCCAGGAGAAGAAAATCACGCAGCACTCATGG
CAGCAGCAGCATTTATCGGAGAATAGGAGGTTTCTTCCCCTCCTTTCCTA
CCACCCCTCCCCTTCTGCTCCTCCTCTTCCTCCTCCCCTTCTGCCTTTCC
CTCCATCGTGCCATCCCTTCAGCCTTCCTTGGCCCCAGCCACACTTGTTT
CGTGGCTCGCCACCGCTCTCCATGTCCAACACCTCCCTTTCATAACTTTC
ACGTCGTCACTGCCGCCACCTCCCTCCCCACACGGCGCACCCACACCCGC
GCCCGCGGCGACGCTACCTTCCTCCTCGATCCGCCCCAGCGATACCAATC
TTCGGATTGGGTCGAAAATTTGCAGTCTTTGCTCGACTCTCGGATTGCCA
AGCGAATATCAGGTCACCTGTGGTTCAATACAGCGTGGGCAGGGGCGGTA
ACGGCGCTGTTTGAATTCATGCCCCAGTGGCACATTGATGCTTATATTTC
CCCTCTTCCGCATCAGCTGATGTCCTCGGCTCTGGGGCTGTTGTTGGTGT
TTCGGACCAAGTACGTGGGGCTGGAGGGAGGGAAAGTGGGGGGAAAAGGG
CGCACAGTACAGGGGAAGGTAGACGGACCCCATAAATCATACTCACCATT
CTCCCATCCACTCTCTTACCCTCTTTCCCTCCGTCCCCCAATGCCTTTAT
CTCCAGCGCCGCCTACGACCGATTTTGGGAAGCTCGAAAAGTGTGGGGCA
GCGTCACCAATAACTGCAGGAATTTGGCGCGAACAGGCCGCATAGCCCTT
GATCGGAAATACCACGCCCGATTCTCCATGTTGGTCATCTCCTTCTCCGT
CACCCTGCGGGCACACCTGCAGAGGGTTGTGGTGTCCACAGAATTGGAAG
CACTGCTTCCTTCGTGGGAAGCGGACCAGGTGAGGATGAATTCCTGCCCG
CCTGCACTGATTGCCATGAAGTTAACGCACCTGATCAACGAAGCCGTGGG
GAAGAACGAGCAGCGGTCGGACTTCTACGCTCTTTATCTAGAGCAACTCG
TGGGAGAGCTCATAAATTGCCTAGGTGAGCCCTCCTGCCTGCCCTTCTCT
TCTTCCTTCTATTTCCCCATCCGTCCGTCGCTCCGTCCCTCCCTCCCTCC
CTGCCTCCCTCCGGGTTGTTTCGCCTCGGTCCTTTCTTCCCAGTTGGTCG
AAACTGATAATATTAAGAGCACATCGGACGATGTTTGGACCCTTTCACCC
TCTCTCAATCTCCCTCCTTCCCTCCCTCTCTCCCTCCCAGGCATGGCAGA
GCGTATCCTCTTGACGCCTGTTCCGGCCTCCTACTCTAGACACACCTCTC
GATTCCTCTCACTCTACACCTTCACGCTCCCCTTCGTCCTCGTCCATGAG
CTGGAGTATTTTACCGTTCCCGCCATTGGCGCGATCTGCTGGACGCTCTT
TTCAATGTAATGGAGGGAGGGAGGGAGGGAGGGAGGGACAGAGGAAGTGA
AGGCGGGGCAGGGAATTTTCCCCCGTAACGCGAAAGATGAGCGGACACTT
ATTCTCCCTCCCTCCCTCCGTCCCTTTCTGTCACCCTCTCTCCCTTTCCT
CCTCCCTCCCAGCGAGGAAATTGGACACCTCATCGAAGAGCCTTTCTCCG
CCACTAGCAAGCAACTTCCCCTCAGGCGCATGACCACCACCATCGCCCGC
GACGTCCGCTCTCTGCTCCAAACCAAGGACGGGATGGACTTTGACACCCT
TCTTGACGAAGACTTGCTCTCAACGGAAGACAGAATCCTGGCCGAAAACG
CCCCTCAATCGACCAAAGTGCAGTCCTTCGTTCCTTCCCTCGCGGCCCCT
TCGATCTGGGGTCCTGGGAAAGGGGATGAAACGAAGGAAGACATGGAGGG
GGACGAGCAGGGGGGGAAGCGAAGAGGAGGGGTTGGTGGGAGGGAGGACA
TTTTTTGGAAAAAAAAGCAATGGGCCAGCCACGGCGGCCTCGGCGGCGGC
GACACTGCAGTCGACTGAGAGGATGAATATATAACGTGGTGGTGAATGAA
AAATGATGGGAAGTGAGGGGAGGAAGATGCAAGAGGGATTGAGGAAGAGG
GAGCGTAGCGACTTAGTGATTGACATGTGATAAAGAAACGAGGAACAAGG
CGTGTATGTGCGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGT
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Coding sequence (CDS) from alignment at chr3:243442..246084+

>NO03G00750.1 ID=NO03G00750.1|Name=NO03G00750.1|organism=Nannochloropsis oceanica|type=CDS|length=1539bp|location=Sequence derived from alignment at chr3:243442..246084+ (Nannochloropsis oceanica)
ATGACAACAACAGGAACATCAGCCATGGATAGTGCAGACACGACGGCTCA
CGCAAGAGCCAGGAGAAGAAAATCACGCAGCACTCATGGCAGCAGCAGCA
TTTATCGGAGAATAGGAGGTTTCTTCCCCTCCTTTCCTACCACCCCTCCC
CTTCTGCTCCTCCTCTTCCTCCTCCCCTTCTGCCTTTCCCTCCATCGTGC
CATCCCTTCAGCCTTCCTTGGCCCCAGCCACACTTGTTTCGTGGCTCGCC
ACCGCTCTCCATGTCCAACACCTCCCTTTCATAACTTTCACGTCGTCACT
GCCGCCACCTCCCTCCCCACACGGCGCACCCACACCCGCGCCCGCGGCGA
CGCTACCTTCCTCCTCGATCCGCCCCAGCGATACCAATCTTCGGATTGGG
TCGAAAATTTGCAGTCTTTGCTCGACTCTCGGATTGCCAAGCGAATATCA
GGTCACCTGTGGTTCAATACAGCGTGGGCAGGGGCGGTAACGGCGCTGTT
TGAATTCATGCCCCAGTGGCACATTGATGCTTATATTTCCCCTCTTCCGC
ATCAGCTGATGTCCTCGGCTCTGGGGCTGTTGTTGGTGTTTCGGACCAAC
GCCGCCTACGACCGATTTTGGGAAGCTCGAAAAGTGTGGGGCAGCGTCAC
CAATAACTGCAGGAATTTGGCGCGAACAGGCCGCATAGCCCTTGATCGGA
AATACCACGCCCGATTCTCCATGTTGGTCATCTCCTTCTCCGTCACCCTG
CGGGCACACCTGCAGAGGGTTGTGGTGTCCACAGAATTGGAAGCACTGCT
TCCTTCGTGGGAAGCGGACCAGGTGAGGATGAATTCCTGCCCGCCTGCAC
TGATTGCCATGAAGTTAACGCACCTGATCAACGAAGCCGTGGGGAAGAAC
GAGCAGCGGTCGGACTTCTACGCTCTTTATCTAGAGCAACTCGTGGGAGA
GCTCATAAATTGCCTAGGCATGGCAGAGCGTATCCTCTTGACGCCTGTTC
CGGCCTCCTACTCTAGACACACCTCTCGATTCCTCTCACTCTACACCTTC
ACGCTCCCCTTCGTCCTCGTCCATGAGCTGGAGTATTTTACCGTTCCCGC
CATTGGCGCGATCTGCTGGACGCTCTTTTCAATCGAGGAAATTGGACACC
TCATCGAAGAGCCTTTCTCCGCCACTAGCAAGCAACTTCCCCTCAGGCGC
ATGACCACCACCATCGCCCGCGACGTCCGCTCTCTGCTCCAAACCAAGGA
CGGGATGGACTTTGACACCCTTCTTGACGAAGACTTGCTCTCAACGGAAG
ACAGAATCCTGGCCGAAAACGCCCCTCAATCGACCAAAGTGCAGTCCTTC
GTTCCTTCCCTCGCGGCCCCTTCGATCTGGGGTCCTGGGAAAGGGGATGA
AACGAAGGAAGACATGGAGGGGGACGAGCAGGGGGGGAAGCGAAGAGGAG
GGGTTGGTGGGAGGGAGGACATTTTTTGGAAAAAAAAGCAATGGGCCAGC
CACGGCGGCCTCGGCGGCGGCGACACTGCAGTCGACTGA
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Synonyms
Publications