Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr2 genome chr2:1317472..1318862 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G04890.1 vs.
Match: EWM30192.1 (ApaG domain protein [Nannochloropsis gaditana])
HSP 1 Score: 315.1 bits (806), Expect = 2.600e-82
Identity = 179/273 (65.57%), Postives = 212/273 (77.66%), Query Frame = 0
Query: 1 MVHVISKDHSRLVKCLYRQLLRDARRVKHSRAPFLFLQERPSRERYSHLWEVTPDHDARLLDAFLPSYLRHELTTCELKSHEMERIVKANFRRFRNLGVAGASASNSGGSGSSREFATLSPSN-----TSSSSSSSGSSRRGSRNRSGGASSAASASPPPTLDEVIDDCMTLTRLMSEQLRLFECTSVTDSFGVRVIATATAAVDEQQRQEQQQQHH-QSSSSTPQSPPHFFFYNIRVENRNRKATVQLVGRHWVIQDNEGKESDSVPKGSIG 268
M H ISKDHSRLV CLYR LLRDARRV+HSRAPF+FLQERPSRERYSHLWE+TPD+DA +LD LPSYLRHELTTCELK+ ++ERI+KANFRRFR+LG S S + R L PS T S S SSG SRR S +R GA+ + PPPTLD+V+DD M LTR M+EQL LFE TSVT+S+G+RVIATAT A+D+QQ+Q+QQQQ Q S + PP+FFFY IRVENRNR+A+VQL+GRHW+IQD +G+E+DSVPKGSIG
Sbjct: 1 MAHTISKDHSRLVFCLYRLLLRDARRVRHSRAPFVFLQERPSRERYSHLWEITPDYDANVLDNLLPSYLRHELTTCELKAQDLERIIKANFRRFRSLGT-------SEESPNPRHQVPL-PSGPPATPTESPSHSSGHSRRRS-SRMRGAN--ITPIPPPTLDQVLDDTMALTRTMAEQLSLFESTSVTESYGIRVIATATTALDQQQQQQQQQQQQMQQSGAVQPPPPYFFFYTIRVENRNRRASVQLMGRHWIIQDEQGRETDSVPKGSIG 262
The following BLAST results are available for this feature:
BLAST of NO02G04890.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
100 200 300 400 500 600 700 800 900 Expect = 2.60e-82 / Id = 65.57 Sequence EWM30192.1
Match Name E-value Identity Description
EWM30192.1 2.600e-82 65.57 ApaG domain protein [Nannochloropsis gaditana] [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO02G04890.1 ID=NO02G04890.1|Name=NO02G04890.1|organism=Nannochloropsis oceanica|type=mRNA|length=981bp ATGGTGCACGTCATCTCCAAGGACCATTCGCGTTTGGTCAAATGCCTCTA TCGGCAGCTGCTTAGGGACGCCCGCAGGGTTAAGCATTCGCGGGCGCCTT TCCTCTTCCTGCAGGAGCGCCCAAGTAGGGAAAGGTATTCGCACTTGTGG GAAGTGACGCCCGACCACGATGCCAGGCTCCTAGACGCATTCCTGCCATC ATACCTCCGGCACGAGCTAACAACATGCGAACTCAAGTCACATGAGATGG AACGCATCGTCAAGGCCAATTTCCGTCGCTTCCGCAACCTGGGCGTCGCC GGGGCCTCTGCCTCTAACAGTGGCGGCAGCGGTAGCAGCAGAGAGTTCGC AACACTTTCACCTTCCAATACCAGTAGCAGTAGTAGTAGTAGTGGCAGCA GCAGGCGGGGCAGCAGGAACCGGAGCGGGGGCGCTTCTTCGGCGGCTTCT GCTTCTCCGCCTCCGACGCTGGACGAAGTCATAGATGATTGCATGACTTT GACGCGCCTCATGTCCGAGCAATTACGTTTGTTCGAATGCACGAGCGTCA CGGACTCCTTTGGAGTGCGTGTCATTGCTACGGCCACCGCCGCCGTCGAT GAGCAGCAGCGGCAGGAGCAGCAGCAACAACATCATCAAAGCTCTTCTTC CACCCCGCAATCCCCTCCCCACTTCTTCTTCTATAACATCCGCGTCGAGA ATAGAAATCGGAAGGCGACGGTGCAGCTAGTGGGGAGACATTGGGTTATT CAGGATAATGAGGGAAAGGAGAGTGACTCGGTGCCCAAGGGAAGCATTGG GGTTGTGGGTCACGAGCCCGTCTTGCGACCAGGGCAAACGATAGTGTATA TGAGCGGTGCCAAGCTGCCCACCCCATACGGCAGCATGCAGGGCTCCTTT CAAATGGTCAAGAAGATGGGGGAAGGCAACAGTGTACCTGACAAGTTTGA CGCACGGGTCAGCCCGTTTGTTCTCAAGTAG back to top protein sequence of NO02G04890.1
>NO02G04890.1-protein ID=NO02G04890.1-protein|Name=NO02G04890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=327bp MVHVISKDHSRLVKCLYRQLLRDARRVKHSRAPFLFLQERPSRERYSHLW EVTPDHDARLLDAFLPSYLRHELTTCELKSHEMERIVKANFRRFRNLGVA GASASNSGGSGSSREFATLSPSNTSSSSSSSGSSRRGSRNRSGGASSAAS ASPPPTLDEVIDDCMTLTRLMSEQLRLFECTSVTDSFGVRVIATATAAVD EQQRQEQQQQHHQSSSSTPQSPPHFFFYNIRVENRNRKATVQLVGRHWVI QDNEGKESDSVPKGSIGVVGHEPVLRPGQTIVYMSGAKLPTPYGSMQGSF QMVKKMGEGNSVPDKFDARVSPFVLK* back to top mRNA from alignment at chr2:1317472..1318862-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G04890.1 ID=NO02G04890.1|Name=NO02G04890.1|organism=Nannochloropsis oceanica|type=mRNA|length=1391bp|location=Sequence derived from alignment at chr2:1317472..1318862- (Nannochloropsis oceanica)ATGGTGCACGTCATCTCCAAGGACCATTCGCGTTTGGTCAAATGCCTCTA
TCGGCAGCTGCTTAGGGACGCCCGCAGGGTTAAGCATTCGCGGGCGCCTT
TCCTCTTCCTGCAGGAGCGCCCAAGTAGGGAAAGGTATTCGCACTTGTGG
GAAGTGACGCCCGACCACGATGCCAGGCTCCTAGACGCATTCCTGCCATC
ATACCTCCGGCACGAGCTAACAACATGCGAACTCAAGTCACAT GTAAGGA
AGAGGTTCAAGGACAGGGGGCTCACATTCCTTTTCTGCCTCAAAGATGAC
CATAAAAATTTGAGACCCAACAACATATTTGCAGTGAGACGTCCACTATC
ACGGGTTGGAAGAACATCTCTACGACCCTCTGGAATCCCTTATCTGAGAC
TTCTTCATTCGTTTCCCGCTCTTATCAAAACAACGACCTCACAGGAGATG
GAACGCATCGTCAAGGCCAATTTCCGTCGCTTCCGCAACCTGGGCGTCGC
CGGGGCCTCTGCCTCTAACAGTGGCGGCAGCGGTAGCAGCAGAGAGTTCG
CAACACTTTCACCTTCCAATACCAGTAGCAGTAGTAGTAGTAGTGGCAGC
AGCAGGCGGGGCAGCAGGAACCGGAGCGGGGGCGCTTCTTCGGCGGCTTC
TGCTTCTCCGCCTCCGACGCTGGACGAAGTCATAGATGATTGCATGACTT
TGACGCGCCTCATGTCCGAGCAATTACGTTTGTTCGAATGCACGAGCGTC
ACGGACTCCTTTGGAGTGCGTGTCATTGCTACGGCCACCGCCGCCGTCGA
TGAGCAGCAGCGGCAGGAGCAGCAGCAACAACATCATCAAAGCTCTTCTT
CCACCCCGCAATCCCCTCCCCACTTCTTCTTCTATAACATCCGCGTCGAG
AATAGAAATCGGAAGGCGACGGTGCAGCTAGTGGGGAGACATTGGGTTAT
TCAGGATAATGAGGGAAAGGAGAGTGACTCGGTGCCCAAGGGAAGCATTG
GTATGTTAGACTTAATGCCTGATGTGATCACCCATGTATACCTCAGACTT
CCGTTGAATGTCTGAAATGTTTGTCGTACACATAAAATGAAGGCCTGTGA
TATGGGCAGAACGCGGAAAGCTTTATCACTTTGACTTCACAAGTCTTTTC
GCTTTTTATGGTCCTAACTTATGCACGTCCCCCGTCCATCCTCCCTTCTT
CACACGCAGGGGTTGTGGGTCACGAGCCCGTCTTGCGACCAGGGCAAACG
ATAGTGTATATGAGCGGTGCCAAGCTGCCCACCCCATACGGCAGCATGCA
GGGCTCCTTTCAAATGGTCAAGAAGATGGGGGAAGGCAACAGTGTACCTG
ACAAGTTTGACGCACGGGTCAGCCCGTTTGTTCTCAAGTAG back to top Coding sequence (CDS) from alignment at chr2:1317472..1318862-
>NO02G04890.1 ID=NO02G04890.1|Name=NO02G04890.1|organism=Nannochloropsis oceanica|type=CDS|length=981bp|location=Sequence derived from alignment at chr2:1317472..1318862- (Nannochloropsis oceanica) ATGGTGCACGTCATCTCCAAGGACCATTCGCGTTTGGTCAAATGCCTCTA TCGGCAGCTGCTTAGGGACGCCCGCAGGGTTAAGCATTCGCGGGCGCCTT TCCTCTTCCTGCAGGAGCGCCCAAGTAGGGAAAGGTATTCGCACTTGTGG GAAGTGACGCCCGACCACGATGCCAGGCTCCTAGACGCATTCCTGCCATC ATACCTCCGGCACGAGCTAACAACATGCGAACTCAAGTCACATGAGATGG AACGCATCGTCAAGGCCAATTTCCGTCGCTTCCGCAACCTGGGCGTCGCC GGGGCCTCTGCCTCTAACAGTGGCGGCAGCGGTAGCAGCAGAGAGTTCGC AACACTTTCACCTTCCAATACCAGTAGCAGTAGTAGTAGTAGTGGCAGCA GCAGGCGGGGCAGCAGGAACCGGAGCGGGGGCGCTTCTTCGGCGGCTTCT GCTTCTCCGCCTCCGACGCTGGACGAAGTCATAGATGATTGCATGACTTT GACGCGCCTCATGTCCGAGCAATTACGTTTGTTCGAATGCACGAGCGTCA CGGACTCCTTTGGAGTGCGTGTCATTGCTACGGCCACCGCCGCCGTCGAT GAGCAGCAGCGGCAGGAGCAGCAGCAACAACATCATCAAAGCTCTTCTTC CACCCCGCAATCCCCTCCCCACTTCTTCTTCTATAACATCCGCGTCGAGA ATAGAAATCGGAAGGCGACGGTGCAGCTAGTGGGGAGACATTGGGTTATT CAGGATAATGAGGGAAAGGAGAGTGACTCGGTGCCCAAGGGAAGCATTGG GGTTGTGGGTCACGAGCCCGTCTTGCGACCAGGGCAAACGATAGTGTATA TGAGCGGTGCCAAGCTGCCCACCCCATACGGCAGCATGCAGGGCTCCTTT CAAATGGTCAAGAAGATGGGGGAAGGCAACAGTGTACCTGACAAGTTTGA CGCACGGGTCAGCCCGTTTGTTCTCAAGTAG back to top