NO01G00730.1, NO01G00730.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G00730.1
Unique NameNO01G00730.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length866
Alignment locationchr1:186656..187994 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:186656..187994 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G00730.1 vs.
Match: CBJ48677.1 (HSPC140 [Ectocarpus siliculosus])

HSP 1 Score: 137.5 bits (345), Expect = 5.600e-29
Identity = 90/252 (35.71%), Postives = 131/252 (51.98%), Query Frame = 0 
Query:    1 MNPLATVECHTSPPSSLPDTFFSSFDIIVASDLPPSQLIRLDALMRERGREAGRGGGFMYADTFGLHGWAFVDLGEGFKGRMDEASKGGAGPGEKEGGKPAAPKEFTLSYPSLQEALSEPWSSLKNRF-PVPRVFVMGRLLGIFDEKHGCRPSPSASGKEVALFVSESQAALLENGLEEGFLSEE------ELRALAISGRTELSPVCAVIGGILGQEILKAVSRKGEPALNCFLWDGETHEGRVIQVPPPA 246
            +N LA+V   T P   LPD FF +F ++V S   P+Q  R+  L R+          F   +TFG  G+ F DLG     R  E  +  + P + E             +PS++EA +  WSSLK+R+ P P+ FV  +++ +F EK G RP P+ + +  A+     ++AL  NGL   FL E          +L  +   E+SPVCA++GGILGQE++KA+S KG PA NC    G T E ++ + P  A
Sbjct:  113 LNRLASVSSETRPLEELPDDFFKAFRVVVLSGAAPAQRRRVSTLCRKFN------AAFYTVETFGYDGFLFCDLGPKHVYRR-EIGQILSDPMDME-------------FPSVEEASAAQWSSLKDRWGPPPKPFVTAQVVALFQEKFGRRPLPADTPECAAVI----ESALENNGLPPDFLGEAGPVAGGAAASLCATATAEVSPVCAILGGILGQEVIKAISGKGAPACNCVALTGMTGEAKMFRAPRKA 340
The following BLAST results are available for this feature:
BLAST of NO01G00730.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ48677.15.600e-2935.71HSPC140 [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G00730NO01G00730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G00730.1NO01G00730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G00730.1.cds1NO01G00730.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00730.1.cds2NO01G00730.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00730.1.cds3NO01G00730.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00730.1.cds4NO01G00730.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G00730.1 ID=NO01G00730.1|Name=NO01G00730.1|organism=Nannochloropsis oceanica|type=mRNA|length=866bp
GGGGGAAGGAAAGAAGGAGCAAGCGTAATCATCGTTCAAGCCCTTCTATT
CATGCTCGTATACGATGATCCTTGCTTCCATACCAGCGTGCAGAAGCCTG
CCTCCCGGGTGTCCGAGAGATGAACCCGCTGGCCACCGTTGAGTGCCATA
CTTCTCCCCCTTCCTCCCTCCCCGACACCTTCTTCTCTTCCTTCGACATC
ATCGTCGCTTCAGACCTCCCTCCCTCCCAGCTTATCCGTCTCGATGCCCT
CATGCGGGAACGAGGGAGGGAGGCGGGGAGGGGGGGAGGGTTTATGTACG
CCGACACGTTCGGGCTGCATGGATGGGCCTTCGTTGATTTGGGGGAGGGT
TTCAAGGGGCGGATGGATGAGGCGAGTAAAGGAGGAGCAGGACCAGGAGA
AAAAGAGGGGGGAAAGCCCGCGGCACCGAAGGAGTTCACGCTTTCCTACC
CCTCCCTTCAAGAAGCGCTTTCAGAGCCGTGGTCCTCTTTGAAAAATCGC
TTTCCAGTGCCACGTGTTTTTGTGATGGGTCGTCTCCTTGGCATCTTCGA
CGAGAAGCACGGGTGCCGCCCCTCCCCCTCTGCCAGCGGCAAGGAGGTGG
CGTTGTTCGTGTCCGAGAGCCAAGCGGCCCTGCTGGAGAATGGCTTAGAA
GAAGGATTTTTGAGCGAGGAGGAACTTCGTGCACTCGCTATCTCAGGTCG
GACGGAGCTGTCGCCGGTGTGTGCCGTCATTGGCGGTATTTTGGGGCAAG
AGATATTAAAGGCTGTTTCACGTAAAGGTGAGCCAGCCCTTAATTGCTTC
CTGTGGGATGGGGAGACGCATGAAGGGAGGGTGATCCAGGTACCGCCGCC
TGCGGTAAAGAGGTAG
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protein sequence of NO01G00730.1

>NO01G00730.1-protein ID=NO01G00730.1-protein|Name=NO01G00730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=249bp
MNPLATVECHTSPPSSLPDTFFSSFDIIVASDLPPSQLIRLDALMRERGR
EAGRGGGFMYADTFGLHGWAFVDLGEGFKGRMDEASKGGAGPGEKEGGKP
AAPKEFTLSYPSLQEALSEPWSSLKNRFPVPRVFVMGRLLGIFDEKHGCR
PSPSASGKEVALFVSESQAALLENGLEEGFLSEEELRALAISGRTELSPV
CAVIGGILGQEILKAVSRKGEPALNCFLWDGETHEGRVIQVPPPAVKR*
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mRNA from alignment at chr1:186656..187994-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00730.1 ID=NO01G00730.1|Name=NO01G00730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1339bp|location=Sequence derived from alignment at chr1:186656..187994- (Nannochloropsis oceanica)
GGGGGAAGGAAAGAAGGAGCAAGCGTAATCATCGTTCAAGCCCTTCTATT
CATGCTCGTATACGATGATCCTTGCTTCCATACCAGCGTGCAGAAGCCTG
CCTCCCGGGTGTCCGAGAGATGAACCCGCTGGCCACCGTTGAGTGCCATA
CTTCTCCCCCTTCCTCCCTCCCCGACACCTTCTTCTCTTCCTTCGACATC
ATCGTCGCTTCAGACCTCCCTCCCTCCCAGCTTATCCGTCTCGATGCCCT
CATGCGGGAACGAGGGAGGGAGGCGGGGAGGGGGGGAGGGTTTATGTACG
CCGACACGTTCGGGCTGCATGGATGGGCCTTCGTTGATTTGGGGGAGGGT
TTCAAGGGGCGGATGGATGAGGCGAGTAAAGGAGGAGCAGGACCAGGAGA
AAAAGAGGGGGGAAAGGTAGGTGGGAAGGAGGGAGGGAGGGAGGAGGGGG
GGGGGAGGGAGGGAGGGAGGGAGGAAGGGGGGGGGGAGGGAGAGAAGGAG
GGAGGACGGGTGCTGCACGTGTAAGGTTACAGACGATTTTGACACCAACA
TTTCTCCTTCCCTCCCTCCCTCCCTCCCTCCATTTCTCTTTCCCTCCCTC
CTTCCAGCCCGCGGCACCGAAGGAGTTCACGCTTTCCTACCCCTCCCTTC
AAGAAGCGCTTTCAGAGCCGTGGTCCTCTTTGAAAAATCGCTTTCCAGTG
CCACGTGTTTTTGTGATGGGTCGTCGTACGTAGGGAGGAAGGGAGGAAGG
GAGGGAGAAAGGGAGGGTGAGTTTTATATCTTGGTCAGCATGTGTACCGG
TAAGCAGAACGTAGTCCTCTCCTCTCTCTCGAGCTCACGTGCTTCCCCTC
CCTCCCTCCCTCCCTCCCTCACGTAGTCCTTGGCATCTTCGACGAGAAGC
ACGGGTGCCGCCCCTCCCCCTCTGCCAGCGGCAAGGAGGTGGCGTTGTTC
GTGTCCGAGAGCCAAGCGGCCCTGCTGGAGAATGGCTTAGAAGAAGGATT
TTTGAGCGAGGAGGAACTTCGGTAAGGAGGGAGGAAGGGAGGGAGGGAGG
GAGGGATAAGATGGAAGGTCAACTTGGCTCTTACTCATGCATGACCATGA
ACTCCTCCTCCCTCCTTCCTTTCTTCCCTCCCTCCTTCCGTCCAACCCTC
AGTGCACTCGCTATCTCAGGTCGGACGGAGCTGTCGCCGGTGTGTGCCGT
CATTGGCGGTATTTTGGGGCAAGAGATATTAAAGGCTGTTTCACGTAAAG
GTGAGCCAGCCCTTAATTGCTTCCTGTGGGATGGGGAGACGCATGAAGGG
AGGGTGATCCAGGTACCGCCGCCTGCGGTAAAGAGGTAG
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Coding sequence (CDS) from alignment at chr1:186656..187994-

>NO01G00730.1 ID=NO01G00730.1|Name=NO01G00730.1|organism=Nannochloropsis oceanica|type=CDS|length=747bp|location=Sequence derived from alignment at chr1:186656..187994- (Nannochloropsis oceanica)
ATGAACCCGCTGGCCACCGTTGAGTGCCATACTTCTCCCCCTTCCTCCCT
CCCCGACACCTTCTTCTCTTCCTTCGACATCATCGTCGCTTCAGACCTCC
CTCCCTCCCAGCTTATCCGTCTCGATGCCCTCATGCGGGAACGAGGGAGG
GAGGCGGGGAGGGGGGGAGGGTTTATGTACGCCGACACGTTCGGGCTGCA
TGGATGGGCCTTCGTTGATTTGGGGGAGGGTTTCAAGGGGCGGATGGATG
AGGCGAGTAAAGGAGGAGCAGGACCAGGAGAAAAAGAGGGGGGAAAGCCC
GCGGCACCGAAGGAGTTCACGCTTTCCTACCCCTCCCTTCAAGAAGCGCT
TTCAGAGCCGTGGTCCTCTTTGAAAAATCGCTTTCCAGTGCCACGTGTTT
TTGTGATGGGTCGTCTCCTTGGCATCTTCGACGAGAAGCACGGGTGCCGC
CCCTCCCCCTCTGCCAGCGGCAAGGAGGTGGCGTTGTTCGTGTCCGAGAG
CCAAGCGGCCCTGCTGGAGAATGGCTTAGAAGAAGGATTTTTGAGCGAGG
AGGAACTTCGTGCACTCGCTATCTCAGGTCGGACGGAGCTGTCGCCGGTG
TGTGCCGTCATTGGCGGTATTTTGGGGCAAGAGATATTAAAGGCTGTTTC
ACGTAAAGGTGAGCCAGCCCTTAATTGCTTCCTGTGGGATGGGGAGACGC
ATGAAGGGAGGGTGATCCAGGTACCGCCGCCTGCGGTAAAGAGGTAG
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Synonyms
Publications