|
BLASTP analysis of N. oceanica IMET1 genes |
diamond |
IMET1v2.protein-noStar.fa |
|
GO annotation for N. oceanica CCMP1779 v2 |
JGI Nanoce1779_2 |
JGI Nanoce1779_2 |
|
PXD010030 |
MaxQuant, Perseus |
LC-MS/MS, C+/C-, PXD010030 |
|
PXD008499 |
MaxQuant, Perseus |
LC-MS/MS, fresh/atomized, PXD008499 |
|
PXD016699 |
MaxQuant |
LC-MS/MS, N+/N-, PXD016699 |
|
PXD016054 |
MaxQuant |
LC-MS/MS, Red/Blue/White, PXD016054 |
|
PXD008721 |
MaxQuant, Perseus |
LC-MS/MS, single-cell heterogeneity, PXD008721 |
|
Gene prediction for Monodopsis sp. C141 |
unpublished |
Monodopsis_C141_genome_v1_annotation_filtered.gff |
|
Gennome assembly for Monodopsis sp. C141 |
unpublished |
Monodopsis_C141_genome_v1.fa |
|
Gene prediction for Monodopsis sp. C73 |
unpublished |
Monodopsis_C73_genome_v1_annotation_filtered.gff |
|
Gennome assembly for Monodopsis sp. C73 |
unpublished |
Monodopsis_C73_genome_v1.fa |
|
BLAST analysis for N. gaditana B-31 |
blastp |
NagaB31-proteins |
|
Gene prediction for N. oceanica CCMP1779 |
JGI Annotation Pipeline |
Nanoce1779_2 |
|
InterPro analysis for N. gaditana B-31 |
InterProScan |
NgB31_proteins |
|
GO annotation for N. gaditana B31 |
Blast2GO |
NgB31_proteins |
|
Gennome assembly for N. oceanica CCMP1779 |
Falcon |
PacBio, ~108.51X |
|
Gennome assembly for N. gaditana CCMP1894 |
HGAP |
PacBio, ~288.0X |
|
Gennome assembly for N. oceanica IMET1 (version 2) |
PBcR, Quiver, FinisherSC, Hi-C |
PacBio, Hi-C |
|
Genome assembly for N. salina CCMP1776 (version 2) |
HGAP3, SSPACE |
PacBio Sequel 100x 4G, illumina PE |
|
Gennome assembly for N. oceanica LAMB2011 |
Canu |
PacBio Sequel, ~113X |