Gennome assembly for N. gaditana CCMP526 |
Newbler & Velvet |
454 GS FLX Titanium; Illumina GA IIx; ~230X |
Gennome assembly for N. gaditana B-31 |
Newbler & SCAMPI |
454; SOLiD; ~17X |
Gene prediction for N. salina CCMP1776 (version 2) |
augustus |
augustus |
Gene prediction for N. oceanica IMET1 |
BRAKER1, PASA2 |
de novo, RNA-seq |
Gene prediction for N. gaditana B-31 |
GCA_000569095.1_NagaB31_1.0 |
GCA_000569095.1_NagaB31_1.0 |
Gennome assembly for N. oceanica KB1 |
pomoxis, Canu, Flye |
GCA_009014695.1_ASM901469v1 |
Gennome assembly for N. oceanica BR2 |
pomoxis, Canu, Flye |
GCA_009014725.1_ASM901472v1 |
GO annotation for N. salina CCMP1776 v2 |
BLAST2GO, InterProScan |
Gene model of N. salina CCMP1776 v2 |
Gennome assembly for N. salina CCMP537 |
Newbler |
Illumina GAIIx, ~108.0X, ASM433546v1 |
Gennome assembly for N. oceanica LAMB0001 |
Soapdenovo |
Illumina GA IIx, ~130X |
Gennome assembly for N. gaditana CCMP527 |
Velvet |
Illumina GA IIx, ~30X |
Gennome assembly for N. limnetica CCMP505 |
Velvet |
Illumina GA IIx, ~30X, ASM161422v1 |
Gennome assembly for N. salina CCMP1776 |
Velvet |
Illumina GA IIx, ~30X, ASM161424v1 |
Gennome assembly for N. oculata CCMP525 |
Newbler |
Illumina GAIIx, ~56.0X, ASM433545v1 |
Gennome assembly for N. oceanica CCMP531 |
Newbler |
Illumina GAIIx, ~70X |
Gennome assembly for N. granulata CCMP529 |
Newbler |
Illumina GAIIx, ~72.0X, ASM433540v1 |
GO annotation for IMET1v2 genes |
BLAST2GO |
IMET1v2_genes.gaf |
Homology annotation for N. oceanica IMET1 |
diamond blastp |
IMET1v2.protein.fa |
BLASTP analysis of N. oceanica IMET1 genes |
diamond |
IMET1v2.protein-noStar.fa |
InterPro analysis for N. oceanica IMET1 |
interproscan |
IMET1v2.protein-noStar.fa |