Analysis

Name Program Source
Gennome assembly for N. gaditana CCMP526 Newbler & Velvet 454 GS FLX Titanium; Illumina GA IIx; ~230X
Gennome assembly for N. gaditana B-31 Newbler & SCAMPI 454; SOLiD; ~17X
Gene prediction for N. salina CCMP1776 (version 2) augustus augustus
Gene prediction for N. oceanica IMET1 BRAKER1, PASA2 de novo, RNA-seq
Gene prediction for N. gaditana B-31 GCA_000569095.1_NagaB31_1.0 GCA_000569095.1_NagaB31_1.0
Gennome assembly for N. oceanica KB1 pomoxis, Canu, Flye GCA_009014695.1_ASM901469v1
Gennome assembly for N. oceanica BR2 pomoxis, Canu, Flye GCA_009014725.1_ASM901472v1
GO annotation for N. salina CCMP1776 v2 BLAST2GO, InterProScan Gene model of N. salina CCMP1776 v2
Gennome assembly for N. salina CCMP537 Newbler Illumina GAIIx, ~108.0X, ASM433546v1
Gennome assembly for N. oceanica LAMB0001 Soapdenovo Illumina GA IIx, ~130X
Gennome assembly for N. gaditana CCMP527 Velvet Illumina GA IIx, ~30X
Gennome assembly for N. limnetica CCMP505 Velvet Illumina GA IIx, ~30X, ASM161422v1
Gennome assembly for N. salina CCMP1776 Velvet Illumina GA IIx, ~30X, ASM161424v1
Gennome assembly for N. oculata CCMP525 Newbler Illumina GAIIx, ~56.0X, ASM433545v1
Gennome assembly for N. oceanica CCMP531 Newbler Illumina GAIIx, ~70X
Gennome assembly for N. granulata CCMP529 Newbler Illumina GAIIx, ~72.0X, ASM433540v1
GO annotation for IMET1v2 genes BLAST2GO IMET1v2_genes.gaf
Homology annotation for N. oceanica IMET1 diamond blastp IMET1v2.protein.fa
BLASTP analysis of N. oceanica IMET1 genes diamond IMET1v2.protein-noStar.fa
InterPro analysis for N. oceanica IMET1 interproscan IMET1v2.protein-noStar.fa