NO14G02110.1, NO14G02110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G02110.1
Unique NameNO14G02110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2244
Alignment locationchr14:634703..636946 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:634703..636946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G02110.1 vs.
Match: XP_005855404.1 (cwf19-1-like protein, partial [Nannochloropsis gaditana CCMP526]; XP_005855815.1 cwf19-like 1-like protein, partial [Nannochloropsis gaditana CCMP526]; EKU20543.1 cwf19-like 1-like protein, partial [Nannochloropsis gaditana CCMP526]; EKU20953.1 cwf19-1-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 388.7 bits (997), Expect = 4.200e-104
Identity = 185/235 (78.72%), Postives = 214/235 (91.06%), Query Frame = 0 
Query:    1 MKVLVAGETKGRLDLLFNRVATLHASKAGPFDALFITGEFFPPADEPEGGVASTAFEDYLMGVKEVPVPTYFMEGPSTSAEAKYGSVLPGSELCPNCKYLGPGGLELVGKLTVGYLSQRHTDKDIAKILEPASTSTFLGADLFFTTDWGQHVAAGHDSYLSESGISNAADVGSSTVADLAVVLRPRYHFAARPSLFFQRPPYKNHATKPKTKLSHVTRFVSLAPVSESKEKSKKW 236
            MK+LVAGE +GRLDLLF RVA+L+ASKAGPFD LF+TGEFFPPADEPEGG+A+TAFEDY+MGVKEVP+PTYF+EGPS SAEAKYGSV+PG ++ P C YLGPGGLELVGKLTVG+LSQRHTDKDI KI+EPAS+STFLGAD+F +TDWGQ VAAG+D  LS  G+ +AA  GSSTVADLAVVLRPRYHFAARP ++FQRPPYKNHA+KPK+KLSHVTRF+SLAP S +KEK++KW
Sbjct:    6 MKILVAGEVRGRLDLLFTRVASLNASKAGPFDTLFVTGEFFPPADEPEGGMATTAFEDYVMGVKEVPLPTYFIEGPSASAEAKYGSVVPGGDVFPKCTYLGPGGLELVGKLTVGFLSQRHTDKDIEKIVEPASSSTFLGADIFLSTDWGQGVAAGYD--LSAMGVRDAAGTGSSTVADLAVVLRPRYHFAARPGIYFQRPPYKNHASKPKSKLSHVTRFLSLAPASVAKEKARKW 238
The following BLAST results are available for this feature:
BLAST of NO14G02110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855404.14.200e-10478.72cwf19-1-like protein, partial [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02110NO14G02110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G02110.1NO14G02110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G02110.1.cds1NO14G02110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G02110.1 ID=NO14G02110.1|Name=NO14G02110.1|organism=Nannochloropsis oceanica|type=mRNA|length=2244bp
ATGAAGGTGCTGGTCGCGGGCGAAACTAAGGGCCGCCTAGACCTCCTTTT
TAATCGGGTAGCCACACTGCACGCCTCCAAAGCGGGGCCCTTCGACGCCT
TGTTCATCACGGGTGAATTCTTCCCTCCTGCCGACGAACCCGAGGGCGGG
GTAGCATCCACTGCCTTCGAAGACTACTTGATGGGCGTCAAGGAAGTTCC
TGTCCCTACCTATTTTATGGAAGGACCCTCCACCAGCGCTGAGGCCAAGT
ACGGCAGCGTATTGCCCGGAAGCGAGCTGTGTCCCAACTGCAAGTACCTT
GGCCCGGGGGGGTTGGAGTTGGTGGGCAAATTGACCGTGGGATATTTGAG
TCAACGCCATACTGACAAGGATATCGCCAAGATTTTAGAACCTGCGAGTA
CCTCCACGTTTCTAGGCGCGGACTTATTTTTTACGACTGATTGGGGGCAG
CATGTGGCGGCGGGGCATGATTCCTACCTCTCCGAATCCGGCATCAGCAA
CGCTGCAGACGTCGGCTCTTCCACAGTGGCGGACTTGGCTGTCGTCCTTC
GTCCTCGCTATCATTTTGCGGCTCGTCCGAGCTTGTTTTTCCAGCGGCCT
CCGTACAAGAACCATGCGACGAAGCCCAAGACGAAGTTGAGTCATGTTAC
GCGATTTGTTAGCTTGGCCCCCGTGTCGGAATCCAAGGAGAAGAGCAAGA
AGTGGCTACATGCCATAAGTATAGAGCCACTGCCTTACATGACCTTGGAG
GCACTAGTGGAAGAACCCGTGGATGTCACCGAGTCTCCTTATTCTGTGTT
CAAGGACGCGAAGCGAAGTGGAGGGGAGGTGGGAAGGCAGGAGGAAGGCG
GGGCACTTAAGAAGTTACGAGGAGAAGCGGGTGGGGAGGTGGGAGTTCTA
ACTTATGAATCAATGCAGCAGATCCAACGGGAAGAAGAGTCGAAGCGGGG
AGACTCGGGGATTTTTTTTTGGGGTGGAGGAAAGGGTGGTCGAGGAGTAG
GAGGGGGGCGAGGGCAGCACCAGCAGCACCAGCAGCAGCAGCAGGAAGTG
GACCCCAATTGCACTACGTTGCACATAGCTAAATTGCCCGTGGGATTCCC
GGCAGAGGATTTGCAGAGGGGCTTGAGTCACTACGGCACAGTGACGCGCG
TGAAAGTACCGGAGGGGAAGGACTTTGCGTTTGTCTCGTTTGGGACGCAT
GAGGAGGCGAAAAAGGCCTTGGAGAGCCGGGGGATAACATTGGGGTTCCA
GGGTGCCAAGATGAGTTGGAGTAAGAGCTCGTCGAGAAGTATGGTTCCTC
CGGTTATTGGTAATGGTGGCCCTGGGGGAGGAGGAATGGGGAGAGGAGGG
ATGAGGGGCTCGATGATGGCTGGGCCGCCGTTGCCGCCGTCGCCGCCGCT
AGGGATGGGAGGAATGGGAGGAGGAGGGGGAGGGCATTACGGCCCAGCAA
GTGGAATGGTGTATCCTCAGATGATGAATATGGGAGGGCCCGGAGGAGGA
ATGGTTGGAGGGCGGGGAGGCCCACCGCCGCCACCACAGTCACCGATTGA
GTGTTGGTTTTGCCTTGGGACAGAGAAAGCGGAGGTGGAGCTGTTGGTGA
CTGTGGGGGAGAGTTTGTACATGGCTGTGCCCAAAGGACCTTTGTGTCGA
GAACATGTTCTTTTGATTCCAATCAATCATGTGGCGGGGCTTGCGCAATT
GAGTCCGGTGGAATGGGAGGAATTTGAAAAGTACACCAAGGCATTACGGT
TGATGTATGCCGAGCAGAAGGAGGGTGAAGAGGAGGGAGATGGAGAAGAA
GAGGGGCAGCGGATGGTGTTGTTCGAACGGAGGTTGGAGACGAGGGGTGC
AAGGCATACGCATGCGCAGATTATCCCCGTGCCGGCTGCGAAGGCTGCGG
GGGTGAGAGAGGCGTTTGAGAAAAGAGGGGAACCTCTTGGTGTGTTTTTT
GAGCACGTGCCGGCAGGGAAATCATTGCCAGAAATGGGATTGAGCCCGGA
GCAGCAGTATATTTATTTGGAGATTCCGGGATTGGGAGGGAAGGGGGTGG
CGAGGCTTTTGCATCGGTTGCCGCCGGGGGGAAGACTGCCACTGACGTAT
GGGAGAGACGTGCTTGCGGAGTTACTGGGGGTGCCACAGAAGGTAAATTG
GAAAAATTGTATGTTGGGCAAAGAGGCGGAAAAGGAGATGGTGGAGCGAT
TGAAAAAGGAGTGGGAGAAATGGGATTTTAGCGAAGGGGAGTAG
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protein sequence of NO14G02110.1

>NO14G02110.1-protein ID=NO14G02110.1-protein|Name=NO14G02110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=748bp
MKVLVAGETKGRLDLLFNRVATLHASKAGPFDALFITGEFFPPADEPEGG
VASTAFEDYLMGVKEVPVPTYFMEGPSTSAEAKYGSVLPGSELCPNCKYL
GPGGLELVGKLTVGYLSQRHTDKDIAKILEPASTSTFLGADLFFTTDWGQ
HVAAGHDSYLSESGISNAADVGSSTVADLAVVLRPRYHFAARPSLFFQRP
PYKNHATKPKTKLSHVTRFVSLAPVSESKEKSKKWLHAISIEPLPYMTLE
ALVEEPVDVTESPYSVFKDAKRSGGEVGRQEEGGALKKLRGEAGGEVGVL
TYESMQQIQREEESKRGDSGIFFWGGGKGGRGVGGGRGQHQQHQQQQQEV
DPNCTTLHIAKLPVGFPAEDLQRGLSHYGTVTRVKVPEGKDFAFVSFGTH
EEAKKALESRGITLGFQGAKMSWSKSSSRSMVPPVIGNGGPGGGGMGRGG
MRGSMMAGPPLPPSPPLGMGGMGGGGGGHYGPASGMVYPQMMNMGGPGGG
MVGGRGGPPPPPQSPIECWFCLGTEKAEVELLVTVGESLYMAVPKGPLCR
EHVLLIPINHVAGLAQLSPVEWEEFEKYTKALRLMYAEQKEGEEEGDGEE
EGQRMVLFERRLETRGARHTHAQIIPVPAAKAAGVREAFEKRGEPLGVFF
EHVPAGKSLPEMGLSPEQQYIYLEIPGLGGKGVARLLHRLPPGGRLPLTY
GRDVLAELLGVPQKVNWKNCMLGKEAEKEMVERLKKEWEKWDFSEGE*
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mRNA from alignment at chr14:634703..636946+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G02110.1 ID=NO14G02110.1|Name=NO14G02110.1|organism=Nannochloropsis oceanica|type=mRNA|length=2244bp|location=Sequence derived from alignment at chr14:634703..636946+ (Nannochloropsis oceanica)
ATGAAGGTGCTGGTCGCGGGCGAAACTAAGGGCCGCCTAGACCTCCTTTT
TAATCGGGTAGCCACACTGCACGCCTCCAAAGCGGGGCCCTTCGACGCCT
TGTTCATCACGGGTGAATTCTTCCCTCCTGCCGACGAACCCGAGGGCGGG
GTAGCATCCACTGCCTTCGAAGACTACTTGATGGGCGTCAAGGAAGTTCC
TGTCCCTACCTATTTTATGGAAGGACCCTCCACCAGCGCTGAGGCCAAGT
ACGGCAGCGTATTGCCCGGAAGCGAGCTGTGTCCCAACTGCAAGTACCTT
GGCCCGGGGGGGTTGGAGTTGGTGGGCAAATTGACCGTGGGATATTTGAG
TCAACGCCATACTGACAAGGATATCGCCAAGATTTTAGAACCTGCGAGTA
CCTCCACGTTTCTAGGCGCGGACTTATTTTTTACGACTGATTGGGGGCAG
CATGTGGCGGCGGGGCATGATTCCTACCTCTCCGAATCCGGCATCAGCAA
CGCTGCAGACGTCGGCTCTTCCACAGTGGCGGACTTGGCTGTCGTCCTTC
GTCCTCGCTATCATTTTGCGGCTCGTCCGAGCTTGTTTTTCCAGCGGCCT
CCGTACAAGAACCATGCGACGAAGCCCAAGACGAAGTTGAGTCATGTTAC
GCGATTTGTTAGCTTGGCCCCCGTGTCGGAATCCAAGGAGAAGAGCAAGA
AGTGGCTACATGCCATAAGTATAGAGCCACTGCCTTACATGACCTTGGAG
GCACTAGTGGAAGAACCCGTGGATGTCACCGAGTCTCCTTATTCTGTGTT
CAAGGACGCGAAGCGAAGTGGAGGGGAGGTGGGAAGGCAGGAGGAAGGCG
GGGCACTTAAGAAGTTACGAGGAGAAGCGGGTGGGGAGGTGGGAGTTCTA
ACTTATGAATCAATGCAGCAGATCCAACGGGAAGAAGAGTCGAAGCGGGG
AGACTCGGGGATTTTTTTTTGGGGTGGAGGAAAGGGTGGTCGAGGAGTAG
GAGGGGGGCGAGGGCAGCACCAGCAGCACCAGCAGCAGCAGCAGGAAGTG
GACCCCAATTGCACTACGTTGCACATAGCTAAATTGCCCGTGGGATTCCC
GGCAGAGGATTTGCAGAGGGGCTTGAGTCACTACGGCACAGTGACGCGCG
TGAAAGTACCGGAGGGGAAGGACTTTGCGTTTGTCTCGTTTGGGACGCAT
GAGGAGGCGAAAAAGGCCTTGGAGAGCCGGGGGATAACATTGGGGTTCCA
GGGTGCCAAGATGAGTTGGAGTAAGAGCTCGTCGAGAAGTATGGTTCCTC
CGGTTATTGGTAATGGTGGCCCTGGGGGAGGAGGAATGGGGAGAGGAGGG
ATGAGGGGCTCGATGATGGCTGGGCCGCCGTTGCCGCCGTCGCCGCCGCT
AGGGATGGGAGGAATGGGAGGAGGAGGGGGAGGGCATTACGGCCCAGCAA
GTGGAATGGTGTATCCTCAGATGATGAATATGGGAGGGCCCGGAGGAGGA
ATGGTTGGAGGGCGGGGAGGCCCACCGCCGCCACCACAGTCACCGATTGA
GTGTTGGTTTTGCCTTGGGACAGAGAAAGCGGAGGTGGAGCTGTTGGTGA
CTGTGGGGGAGAGTTTGTACATGGCTGTGCCCAAAGGACCTTTGTGTCGA
GAACATGTTCTTTTGATTCCAATCAATCATGTGGCGGGGCTTGCGCAATT
GAGTCCGGTGGAATGGGAGGAATTTGAAAAGTACACCAAGGCATTACGGT
TGATGTATGCCGAGCAGAAGGAGGGTGAAGAGGAGGGAGATGGAGAAGAA
GAGGGGCAGCGGATGGTGTTGTTCGAACGGAGGTTGGAGACGAGGGGTGC
AAGGCATACGCATGCGCAGATTATCCCCGTGCCGGCTGCGAAGGCTGCGG
GGGTGAGAGAGGCGTTTGAGAAAAGAGGGGAACCTCTTGGTGTGTTTTTT
GAGCACGTGCCGGCAGGGAAATCATTGCCAGAAATGGGATTGAGCCCGGA
GCAGCAGTATATTTATTTGGAGATTCCGGGATTGGGAGGGAAGGGGGTGG
CGAGGCTTTTGCATCGGTTGCCGCCGGGGGGAAGACTGCCACTGACGTAT
GGGAGAGACGTGCTTGCGGAGTTACTGGGGGTGCCACAGAAGGTAAATTG
GAAAAATTGTATGTTGGGCAAAGAGGCGGAAAAGGAGATGGTGGAGCGAT
TGAAAAAGGAGTGGGAGAAATGGGATTTTAGCGAAGGGGAGTAG
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Coding sequence (CDS) from alignment at chr14:634703..636946+

>NO14G02110.1 ID=NO14G02110.1|Name=NO14G02110.1|organism=Nannochloropsis oceanica|type=CDS|length=2244bp|location=Sequence derived from alignment at chr14:634703..636946+ (Nannochloropsis oceanica)
ATGAAGGTGCTGGTCGCGGGCGAAACTAAGGGCCGCCTAGACCTCCTTTT
TAATCGGGTAGCCACACTGCACGCCTCCAAAGCGGGGCCCTTCGACGCCT
TGTTCATCACGGGTGAATTCTTCCCTCCTGCCGACGAACCCGAGGGCGGG
GTAGCATCCACTGCCTTCGAAGACTACTTGATGGGCGTCAAGGAAGTTCC
TGTCCCTACCTATTTTATGGAAGGACCCTCCACCAGCGCTGAGGCCAAGT
ACGGCAGCGTATTGCCCGGAAGCGAGCTGTGTCCCAACTGCAAGTACCTT
GGCCCGGGGGGGTTGGAGTTGGTGGGCAAATTGACCGTGGGATATTTGAG
TCAACGCCATACTGACAAGGATATCGCCAAGATTTTAGAACCTGCGAGTA
CCTCCACGTTTCTAGGCGCGGACTTATTTTTTACGACTGATTGGGGGCAG
CATGTGGCGGCGGGGCATGATTCCTACCTCTCCGAATCCGGCATCAGCAA
CGCTGCAGACGTCGGCTCTTCCACAGTGGCGGACTTGGCTGTCGTCCTTC
GTCCTCGCTATCATTTTGCGGCTCGTCCGAGCTTGTTTTTCCAGCGGCCT
CCGTACAAGAACCATGCGACGAAGCCCAAGACGAAGTTGAGTCATGTTAC
GCGATTTGTTAGCTTGGCCCCCGTGTCGGAATCCAAGGAGAAGAGCAAGA
AGTGGCTACATGCCATAAGTATAGAGCCACTGCCTTACATGACCTTGGAG
GCACTAGTGGAAGAACCCGTGGATGTCACCGAGTCTCCTTATTCTGTGTT
CAAGGACGCGAAGCGAAGTGGAGGGGAGGTGGGAAGGCAGGAGGAAGGCG
GGGCACTTAAGAAGTTACGAGGAGAAGCGGGTGGGGAGGTGGGAGTTCTA
ACTTATGAATCAATGCAGCAGATCCAACGGGAAGAAGAGTCGAAGCGGGG
AGACTCGGGGATTTTTTTTTGGGGTGGAGGAAAGGGTGGTCGAGGAGTAG
GAGGGGGGCGAGGGCAGCACCAGCAGCACCAGCAGCAGCAGCAGGAAGTG
GACCCCAATTGCACTACGTTGCACATAGCTAAATTGCCCGTGGGATTCCC
GGCAGAGGATTTGCAGAGGGGCTTGAGTCACTACGGCACAGTGACGCGCG
TGAAAGTACCGGAGGGGAAGGACTTTGCGTTTGTCTCGTTTGGGACGCAT
GAGGAGGCGAAAAAGGCCTTGGAGAGCCGGGGGATAACATTGGGGTTCCA
GGGTGCCAAGATGAGTTGGAGTAAGAGCTCGTCGAGAAGTATGGTTCCTC
CGGTTATTGGTAATGGTGGCCCTGGGGGAGGAGGAATGGGGAGAGGAGGG
ATGAGGGGCTCGATGATGGCTGGGCCGCCGTTGCCGCCGTCGCCGCCGCT
AGGGATGGGAGGAATGGGAGGAGGAGGGGGAGGGCATTACGGCCCAGCAA
GTGGAATGGTGTATCCTCAGATGATGAATATGGGAGGGCCCGGAGGAGGA
ATGGTTGGAGGGCGGGGAGGCCCACCGCCGCCACCACAGTCACCGATTGA
GTGTTGGTTTTGCCTTGGGACAGAGAAAGCGGAGGTGGAGCTGTTGGTGA
CTGTGGGGGAGAGTTTGTACATGGCTGTGCCCAAAGGACCTTTGTGTCGA
GAACATGTTCTTTTGATTCCAATCAATCATGTGGCGGGGCTTGCGCAATT
GAGTCCGGTGGAATGGGAGGAATTTGAAAAGTACACCAAGGCATTACGGT
TGATGTATGCCGAGCAGAAGGAGGGTGAAGAGGAGGGAGATGGAGAAGAA
GAGGGGCAGCGGATGGTGTTGTTCGAACGGAGGTTGGAGACGAGGGGTGC
AAGGCATACGCATGCGCAGATTATCCCCGTGCCGGCTGCGAAGGCTGCGG
GGGTGAGAGAGGCGTTTGAGAAAAGAGGGGAACCTCTTGGTGTGTTTTTT
GAGCACGTGCCGGCAGGGAAATCATTGCCAGAAATGGGATTGAGCCCGGA
GCAGCAGTATATTTATTTGGAGATTCCGGGATTGGGAGGGAAGGGGGTGG
CGAGGCTTTTGCATCGGTTGCCGCCGGGGGGAAGACTGCCACTGACGTAT
GGGAGAGACGTGCTTGCGGAGTTACTGGGGGTGCCACAGAAGGTAAATTG
GAAAAATTGTATGTTGGGCAAAGAGGCGGAAAAGGAGATGGTGGAGCGAT
TGAAAAAGGAGTGGGAGAAATGGGATTTTAGCGAAGGGGAGTAG
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Synonyms
Publications