NO14G02100.1, NO14G02100.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G02100.1
Unique NameNO14G02100.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3683
Alignment locationchr14:633497..637271 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:633497..637271 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO14G02100.1 vs.
Match: EWM24575.1 (trna specific adenosine deaminase [Nannochloropsis gaditana])

HSP 1 Score: 266.2 bits (679), Expect = 1.100e-67
Identity = 134/189 (70.90%), Postives = 149/189 (78.84%), Query Frame = 0
Query:   25 EFNTEDALFMKLALEEGSKAIQEGEVPVGVVFVHYPFSSSLLPSSNINSSKPSSILSHLSARVLGRGHNRTNVTKNGTRHAELVVADEILALGTPIGVFQDCDVYVTCEPCIMCAGALGLLKIRRVVFGCKNERFGGCGSILNVHEAPHLRHRYVAQAGLMEEEAVTLFKNFYARENQQAPVSKRRKKG 214
            EF  E+  FMK+AL EG  AI+EGEVPVGVVFV+ P      P  N   S  SS+       +LG+GHNRTN TKNGTRHAELV+ DEILA G P  VFQ+CDVYVTCEPCIMCAGAL LLKIRRVVFGCKN+RFGGCGSIL+VH APHLRHRYVA AGLME EA+ LFK+FYAREN+QAP +KRRKKG
Sbjct:    3 EFTAEEINFMKIALAEGQIAIEEGEVPVGVVFVYRPD-----PLKNTACSIDSSVPFFGPGEILGKGHNRTNATKNGTRHAELVIVDEILARGHPPSVFQECDVYVTCEPCIMCAGALSLLKIRRVVFGCKNDRFGGCGSILSVHGAPHLRHRYVADAGLMENEAIRLFKSFYARENRQAPDTKRRKKG 186          
The following BLAST results are available for this feature:
BLAST of NO14G02100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24575.11.100e-6770.90trna specific adenosine deaminase [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02100NO14G02100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G02100.1NO14G02100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G02100.1.cds1NO14G02100.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02100.1.cds2NO14G02100.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G02100.1 ID=NO14G02100.1|Name=NO14G02100.1|organism=Nannochloropsis oceanica|type=mRNA|length=3683bp
GCTGCTGCTGCTGCTGCTGCCACCACTACAACCACTACTACTGCTGCTCC
TGCTGCTGCTGTTGTACCTACAGGTGGTGTAAACGATTTAGCTCTAGACA
ACTAGACAACATTGAATACGGGAAGGGATATGCGTAAATGTTGTGGGAAA
ACCTGCCCATAAGACTTCGACAAACACGGTATGCACATTCCTTGCTCGTC
CACGTGAACATTTCCTCTTCCTCCGCCTCGCCTAGCTCTAACCTCTCCCA
ATATACAGCCCCAACCTTCCCACTCTCTCCTTTCCTCGCTCCCTCGCTCC
TTTCCTACCACGGCTACCCCCACTACTACTCCCCTTCGCTAAAATCCCAT
TTCTCCCACTCCTTTTTCAATCGCTCCACCATCTCCTTTTCCGCCTCTTT
GCCCAACATACAATTTTTCCAATTTACCTTCTGTGGCACCCCCAGTAACT
CCGCAAGCACGTCTCTCCCATACGTCAGTGGCAGTCTTCCCCCCGGCGGC
AACCGATGCAAAAGCCTCGCCACCCCCTTCCCTCCCAATCCCGGAATCTC
CAAATAAATATACTGCTGCTCCGGGCTCAATCCCATTTCTGGCAATGATT
TCCCTGCCGGCACGTGCTCAAAAAACACACCAAGAGGTTCCCCTCTTTTC
TCAAACGCCTCTCTCACCCCCGCAGCCTTCGCAGCCGGCACGGGGATAAT
CTGCGCATGCGTATGCCTTGCACCCCTCGTCTCCAACCTCCGTTCGAACA
ACACCATCCGCTGCCCCTCTTCTTCTCCATCTCCCTCCTCTTCACCCTCC
TTCTGCTCGGCATACATCAACCGTAATGCCTTGGTGTACTTTTCAAATTC
CTCCCATTCCACCGGACTCAATTGCGCAAGCCCCGCCACATGATTGATTG
GAATCAAAAGAACATGTTCTCGACACAAAGGTCCTTTGGGCACAGCCATG
TACAAACTCTCCCCCACAGTCACCAACAGCTCCACCTCCGCTTTCTCTGT
CCCAAGGCAAAACCAACACTCAATCGGTGACTGTGGTGGCGGCGGTGGGC
CTCCCCGCCCTCCAACCATTCCTCCTCCGGGCCCTCCCATATTCATCATC
TGAGGATACACCATTCCACTTGCTGGGCCGTAATGCCCTCCCCCTCCTCC
TCCCATTCCTCCCATCCCTAGCGGCGGCGACGGCGGCAACGGCGGCCCAG
CCATCATCGAGCCCCTCATCCCTCCTCTCCCCATTCCTCCTCCCCCAGGG
CCACCATTACCAATAACCGGAGGAACCATACTTCTCGACGAGCTCTTACT
CCAACTCATCTTGGCACCCTGGAACCCCAATGTTATCCCCCGGCTCTCCA
AGGCCTTTTTCGCCTCCTCATGCGTCCCAAACGAGACAAACGCAAAGTCC
TTCCCCTCCGGTACTTTCACGCGCGTCACTGTGCCGTAGTGACTCAAGCC
CCTCTGCAAATCCTCTGCCGGGAATCCCACGGGCAATTTAGCTATGTGCA
ACGTAGTGCAATTGGGGTCCACTTCCTGCTGCTGCTGCTGGTGCTGCTGG
TGCTGCCCTCGCCCCCCTCCTACTCCTCGACCACCCTTTCCTCCACCCCA
AAAAAAAATCCCCGAGTCTCCCCGCTTCGACTCTTCTTCCCGTTGGATCT
GCTGCATTGATTCATAAGTTAGAACTCCCACCTCCCCACCCGCTTCTCCT
CGTAACTTCTTAAGTGCCCCGCCTTCCTCCTGCCTTCCCACCTCCCCTCC
ACTTCGCTTCGCGTCCTTGAACACAGAATAAGGAGACTCGGTGACATCCA
CGGGTTCTTCCACTAGTGCCTCCAAGGTCATGTAAGGCAGTGGCTCTATA
CTTATGGCATGTAGCCACTTCTTGCTCTTCTCCTTGGATTCCGACACGGG
GGCCAAGCTAACAAATCGCGTAACATGACTCAACTTCGTCTTGGGCTTCG
TCGCATGGTTCTTGTACGGAGGCCGCTGGAAAAACAAGCTCGGACGAGCC
GCAAAATGATAGCGAGGACGAAGGACGACAGCCAAGTCCGCCACTGTGGA
AGAGCCGACGTCTGCAGCGTTGCTGATGCCGGATTCGGAGAGGTAGGAAT
CATGCCCCGCCGCCACATGCTGCCCCCAATCAGTCGTAAAAAATAAGTCC
GCGCCTAGAAACGTGGAGGTACTCGCAGGTTCTAAAATCTTGGCGATATC
CTTGTCAGTATGGCGTTGACTCAAATATCCCACGGTCAATTTGCCCACCA
ACTCCAACCCCCCCGGGCCAAGGTACTTGCAGTTGGGACACAGCTCGCTT
CCGGGCAATACGCTGCCGTACTTGGCCTCAGCGCTGGTGGAGGGTCCTTC
CATAAAATAGGTAGGGACAGGAACTTCCTTGACGCCCATCAAGTAGTCTT
CGAAGGCAGTGGATGCTACCCCGCCCTCGGGTTCGTCGGCAGGAGGGAAG
AATTCACCCGTGATGAACAAGGCGTCGAAGGGCCCCGCTTTGGAGGCGTG
CAGTGTGGCTACCCGATTAAAAAGGAGGTCTAGGCGGCCCTTAGTTTCGC
CCGCGACCAGCACCTTCATGGCTGGAAAAACTCTGGATTACTTGTTGATT
CCGGGCGCAGGGGTTGATGCGGTAGACTCTTTTTTGGGGGGTTAACGGTG
GGTAGGACAAGGGAAAGCAAGAGGAGGTCAGGCATGCTTAAGAGGGGAAG
GCGTTGTAAGATTAATAGCAAGTAGCAGCCTATCATCATAAATAAAGGCG
TGGGTGAATGGCAGGGGCATGTGAAATTCTTGCCTTTGGGGACCTCACAT
GACTCCCCCCGTGCGCCTTACGTTCTACGAAACCTCCCCACTCCTCCACC
CATGCAAATCTCTCCAGTCCACCCTACAACCACCACAGGACAATGGCCAC
AACCAAAGGACCCCCAGGACAAGACATATATCCTCATCATTCGAAAAACG
TGCCTCCAGCTGAAGAATTCAACACAGAAGACGCATTGTTCATGAAACTA
GCCTTGGAGGAGGGGAGTAAAGCCATACAGGAAGGCGAGGTGCCCGTAGG
CGTGGTTTTTGTCCATTATCCCTTCTCGTCCTCCCTACTTCCTTCATCGA
ATATCAACAGTTCCAAACCATCTTCTATCCTTTCTCATCTTTCTGCTCGA
GTCCTGGGACGAGGGCACAACCGCACCAATGTCACCAAAAATGGGACCCG
GCACGCAGAGCTCGTGGTGGCGGATGAAATTCTCGCCCTTGGAACGCCGA
TCGGCGTCTTCCAAGATTGTGATGTGTATGTAACATGTGAGCCCTGCATT
ATGTGTGCGGGTGCTTTGGGTCTCTTGAAAATTCGGCGTGTGGTATTCGG
TTGTAAGAATGAGCGGTTTGGTGGGTGTGGGTCGATTTTGAATGTGCACG
AGGCCCCCCATTTGAGGCATCGGTATGTGGCGCAAGCGGGTTTGATGGAG
GAAGAGGCCGTGACACTATTCAAAAACTTCTATGCACGAGAAAATCAGCA
AGCACCCGTGTCCAAACGAAGGAAAAAAGGGCAAGGCATCAACGAAGAGG
GCCAAGAAACAATTCATAGAGTACCCTCAGCAGCAGCAGCAGCAGCAACA
ACAACAACAGAATCAAAAAATGCCTATGATACACCTTCGTGACACGGAAA
TAGAGAGAGTAAAAATTAAGAATACAATAAGGT
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protein sequence of NO14G02100.1

>NO14G02100.1-protein ID=NO14G02100.1-protein|Name=NO14G02100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=250bp
MATTKGPPGQDIYPHHSKNVPPAEEFNTEDALFMKLALEEGSKAIQEGEV
PVGVVFVHYPFSSSLLPSSNINSSKPSSILSHLSARVLGRGHNRTNVTKN
GTRHAELVVADEILALGTPIGVFQDCDVYVTCEPCIMCAGALGLLKIRRV
VFGCKNERFGGCGSILNVHEAPHLRHRYVAQAGLMEEEAVTLFKNFYARE
NQQAPVSKRRKKGQGINEEGQETIHRVPSAAAAAATTTTESKNAYDTPS*
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mRNA from alignment at chr14:633497..637271-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G02100.1 ID=NO14G02100.1|Name=NO14G02100.1|organism=Nannochloropsis oceanica|type=mRNA|length=3775bp|location=Sequence derived from alignment at chr14:633497..637271- (Nannochloropsis oceanica)
GCTGCTGCTGCTGCTGCTGCCACCACTACAACCACTACTACTGCTGCTCC TGCTGCTGCTGTTGTACCTACAGGTGGTGTAAACGATTTAGCTCTAGACA ACTAGACAACATTGAATACGGGAAGGGATATGCGTAAATGTTGTGGGAAA ACCTGCCCATAAGACTTCGACAAACACGGTATGCACATTCCTTGCTCGTC CACGTGAACATTTCCTCTTCCTCCGCCTCGCCTAGCTCTAACCTCTCCCA ATATACAGCCCCAACCTTCCCACTCTCTCCTTTCCTCGCTCCCTCGCTCC TTTCCTACCACGGCTACCCCCACTACTACTCCCCTTCGCTAAAATCCCAT TTCTCCCACTCCTTTTTCAATCGCTCCACCATCTCCTTTTCCGCCTCTTT GCCCAACATACAATTTTTCCAATTTACCTTCTGTGGCACCCCCAGTAACT CCGCAAGCACGTCTCTCCCATACGTCAGTGGCAGTCTTCCCCCCGGCGGC AACCGATGCAAAAGCCTCGCCACCCCCTTCCCTCCCAATCCCGGAATCTC CAAATAAATATACTGCTGCTCCGGGCTCAATCCCATTTCTGGCAATGATT TCCCTGCCGGCACGTGCTCAAAAAACACACCAAGAGGTTCCCCTCTTTTC TCAAACGCCTCTCTCACCCCCGCAGCCTTCGCAGCCGGCACGGGGATAAT CTGCGCATGCGTATGCCTTGCACCCCTCGTCTCCAACCTCCGTTCGAACA ACACCATCCGCTGCCCCTCTTCTTCTCCATCTCCCTCCTCTTCACCCTCC TTCTGCTCGGCATACATCAACCGTAATGCCTTGGTGTACTTTTCAAATTC CTCCCATTCCACCGGACTCAATTGCGCAAGCCCCGCCACATGATTGATTG GAATCAAAAGAACATGTTCTCGACACAAAGGTCCTTTGGGCACAGCCATG TACAAACTCTCCCCCACAGTCACCAACAGCTCCACCTCCGCTTTCTCTGT CCCAAGGCAAAACCAACACTCAATCGGTGACTGTGGTGGCGGCGGTGGGC CTCCCCGCCCTCCAACCATTCCTCCTCCGGGCCCTCCCATATTCATCATC TGAGGATACACCATTCCACTTGCTGGGCCGTAATGCCCTCCCCCTCCTCC TCCCATTCCTCCCATCCCTAGCGGCGGCGACGGCGGCAACGGCGGCCCAG CCATCATCGAGCCCCTCATCCCTCCTCTCCCCATTCCTCCTCCCCCAGGG CCACCATTACCAATAACCGGAGGAACCATACTTCTCGACGAGCTCTTACT CCAACTCATCTTGGCACCCTGGAACCCCAATGTTATCCCCCGGCTCTCCA AGGCCTTTTTCGCCTCCTCATGCGTCCCAAACGAGACAAACGCAAAGTCC TTCCCCTCCGGTACTTTCACGCGCGTCACTGTGCCGTAGTGACTCAAGCC CCTCTGCAAATCCTCTGCCGGGAATCCCACGGGCAATTTAGCTATGTGCA ACGTAGTGCAATTGGGGTCCACTTCCTGCTGCTGCTGCTGGTGCTGCTGG TGCTGCCCTCGCCCCCCTCCTACTCCTCGACCACCCTTTCCTCCACCCCA AAAAAAAATCCCCGAGTCTCCCCGCTTCGACTCTTCTTCCCGTTGGATCT GCTGCATTGATTCATAAGTTAGAACTCCCACCTCCCCACCCGCTTCTCCT CGTAACTTCTTAAGTGCCCCGCCTTCCTCCTGCCTTCCCACCTCCCCTCC ACTTCGCTTCGCGTCCTTGAACACAGAATAAGGAGACTCGGTGACATCCA CGGGTTCTTCCACTAGTGCCTCCAAGGTCATGTAAGGCAGTGGCTCTATA CTTATGGCATGTAGCCACTTCTTGCTCTTCTCCTTGGATTCCGACACGGG GGCCAAGCTAACAAATCGCGTAACATGACTCAACTTCGTCTTGGGCTTCG TCGCATGGTTCTTGTACGGAGGCCGCTGGAAAAACAAGCTCGGACGAGCC GCAAAATGATAGCGAGGACGAAGGACGACAGCCAAGTCCGCCACTGTGGA AGAGCCGACGTCTGCAGCGTTGCTGATGCCGGATTCGGAGAGGTAGGAAT CATGCCCCGCCGCCACATGCTGCCCCCAATCAGTCGTAAAAAATAAGTCC GCGCCTAGAAACGTGGAGGTACTCGCAGGTTCTAAAATCTTGGCGATATC CTTGTCAGTATGGCGTTGACTCAAATATCCCACGGTCAATTTGCCCACCA ACTCCAACCCCCCCGGGCCAAGGTACTTGCAGTTGGGACACAGCTCGCTT CCGGGCAATACGCTGCCGTACTTGGCCTCAGCGCTGGTGGAGGGTCCTTC CATAAAATAGGTAGGGACAGGAACTTCCTTGACGCCCATCAAGTAGTCTT CGAAGGCAGTGGATGCTACCCCGCCCTCGGGTTCGTCGGCAGGAGGGAAG AATTCACCCGTGATGAACAAGGCGTCGAAGGGCCCCGCTTTGGAGGCGTG CAGTGTGGCTACCCGATTAAAAAGGAGGTCTAGGCGGCCCTTAGTTTCGC CCGCGACCAGCACCTTCATGGCTGGAAAAACTCTGGATTACTTGTTGATT CCGGGCGCAGGGGTTGATGCGGTAGACTCTTTTTTGGGGGGTTAACGGTG GGTAGGACAAGGGAAAGCAAGAGGAGGTCAGGCATGCTTAAGAGGGGAAG GCGTTGTAAGATTAATAGCAAGTAGCAGCCTATCATCATAAATAAAGGCG TGGGTGAATGGCAGGGGCATGTGAAATTCTTGCCTTTGGGGACCTCACAT GACTCCCCCCGTGCGCCTTACGTTCTACGAAACCTCCCCACTCCTCCACC CATGCAAATCTCTCCAGTCCACCCTACAACCACCACAGGACAATGGCCAC AACCAAAGGACCCCCAGGACAAGACATATATCCTCATCATTCGAAAAACG TGCCTCCAGCTGAAGAATTCAACACAGAAGACGCATTGTTCATGAAACTA GCCTTGGAGGAGGGGAGTAAAGCCATACAGGAAGGCGAGGTGCCCGTAGG CGTGGTTTTTGTCCATTATCCCTTCTCGTCCTCCCTACTTCCTTCATCGA ATATCAACAGTTCCAAACCATCTTCTATCCTTTCTCATCTTTCTGCTCGA GTCCTGGGACGAGGGCACAACCGCACCAATGTCACCAAAAATGGGACCCG GCACGCAGAGCTCGTGGTGGCGGATGAAATTCTCGCCCTTGGAACGCCGA TCGGCGTCTTCCAAGATTGTGATGTGTATGTAACATGTGAGCCCTGCATT ATGTGTGCGGGTGCTTTGGGTCTCTTGAAAATTCGGCGTGTGGTATTCGG TTGTAAGAATGAGCGGTTTGGTGGGTGTGGGTCGATTTTGAATGTGCACG AGGCCCCCCATTTGAGGCATCGGTATGTGGCGCAAGCGGGTTTGATGGAG GAAGAGGCCGTGACACTATTCAAAAACTTCTATGCACGAGAAAATCAGCA AGGTACGAGCGAGGAGATACGATCTTGATGGCTCTCATGTCGATCTCTTC TAATCCTTTCCTTCATACTACCCCACACTCGTTAACCCTCACAGCACCCG TGTCCAAACGAAGGAAAAAAGGGCAAGGCATCAACGAAGAGGGCCAAGAA ACAATTCATAGAGTACCCTCAGCAGCAGCAGCAGCAGCAACAACAACAAC AGAATCAAAAAATGCCTATGATACACCTTCGTGACACGGAAATAGAGAGA GTAAAAATTAAGAATACAATAAGGT
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Coding sequence (CDS) from alignment at chr14:633497..637271-

>NO14G02100.1 ID=NO14G02100.1|Name=NO14G02100.1|organism=Nannochloropsis oceanica|type=CDS|length=750bp|location=Sequence derived from alignment at chr14:633497..637271- (Nannochloropsis oceanica)
ATGGCCACAACCAAAGGACCCCCAGGACAAGACATATATCCTCATCATTC
GAAAAACGTGCCTCCAGCTGAAGAATTCAACACAGAAGACGCATTGTTCA
TGAAACTAGCCTTGGAGGAGGGGAGTAAAGCCATACAGGAAGGCGAGGTG
CCCGTAGGCGTGGTTTTTGTCCATTATCCCTTCTCGTCCTCCCTACTTCC
TTCATCGAATATCAACAGTTCCAAACCATCTTCTATCCTTTCTCATCTTT
CTGCTCGAGTCCTGGGACGAGGGCACAACCGCACCAATGTCACCAAAAAT
GGGACCCGGCACGCAGAGCTCGTGGTGGCGGATGAAATTCTCGCCCTTGG
AACGCCGATCGGCGTCTTCCAAGATTGTGATGTGTATGTAACATGTGAGC
CCTGCATTATGTGTGCGGGTGCTTTGGGTCTCTTGAAAATTCGGCGTGTG
GTATTCGGTTGTAAGAATGAGCGGTTTGGTGGGTGTGGGTCGATTTTGAA
TGTGCACGAGGCCCCCCATTTGAGGCATCGGTATGTGGCGCAAGCGGGTT
TGATGGAGGAAGAGGCCGTGACACTATTCAAAAACTTCTATGCACGAGAA
AATCAGCAAGCACCCGTGTCCAAACGAAGGAAAAAAGGGCAAGGCATCAA
CGAAGAGGGCCAAGAAACAATTCATAGAGTACCCTCAGCAGCAGCAGCAG
CAGCAACAACAACAACAGAATCAAAAAATGCCTATGATACACCTTCGTGA
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Synonyms
Publications