|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr14 | genome | chr14:633497..637271 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO14G02100.1 vs.
Match: EWM24575.1 (trna specific adenosine deaminase [Nannochloropsis gaditana]) HSP 1 Score: 266.2 bits (679), Expect = 1.100e-67 Identity = 134/189 (70.90%), Postives = 149/189 (78.84%), Query Frame = 0
Query: 25 EFNTEDALFMKLALEEGSKAIQEGEVPVGVVFVHYPFSSSLLPSSNINSSKPSSILSHLSARVLGRGHNRTNVTKNGTRHAELVVADEILALGTPIGVFQDCDVYVTCEPCIMCAGALGLLKIRRVVFGCKNERFGGCGSILNVHEAPHLRHRYVAQAGLMEEEAVTLFKNFYARENQQAPVSKRRKKG 214
EF E+ FMK+AL EG AI+EGEVPVGVVFV+ P P N S SS+ +LG+GHNRTN TKNGTRHAELV+ DEILA G P VFQ+CDVYVTCEPCIMCAGAL LLKIRRVVFGCKN+RFGGCGSIL+VH APHLRHRYVA AGLME EA+ LFK+FYAREN+QAP +KRRKKG
Sbjct: 3 EFTAEEINFMKIALAEGQIAIEEGEVPVGVVFVYRPD-----PLKNTACSIDSSVPFFGPGEILGKGHNRTNATKNGTRHAELVIVDEILARGHPPSVFQECDVYVTCEPCIMCAGALSLLKIRRVVFGCKNDRFGGCGSILSVHGAPHLRHRYVADAGLMENEAIRLFKSFYARENRQAPDTKRRKKG 186
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO14G02100.1 ID=NO14G02100.1|Name=NO14G02100.1|organism=Nannochloropsis oceanica|type=mRNA|length=3683bp GCTGCTGCTGCTGCTGCTGCCACCACTACAACCACTACTACTGCTGCTCC TGCTGCTGCTGTTGTACCTACAGGTGGTGTAAACGATTTAGCTCTAGACA ACTAGACAACATTGAATACGGGAAGGGATATGCGTAAATGTTGTGGGAAA ACCTGCCCATAAGACTTCGACAAACACGGTATGCACATTCCTTGCTCGTC CACGTGAACATTTCCTCTTCCTCCGCCTCGCCTAGCTCTAACCTCTCCCA ATATACAGCCCCAACCTTCCCACTCTCTCCTTTCCTCGCTCCCTCGCTCC TTTCCTACCACGGCTACCCCCACTACTACTCCCCTTCGCTAAAATCCCAT TTCTCCCACTCCTTTTTCAATCGCTCCACCATCTCCTTTTCCGCCTCTTT GCCCAACATACAATTTTTCCAATTTACCTTCTGTGGCACCCCCAGTAACT CCGCAAGCACGTCTCTCCCATACGTCAGTGGCAGTCTTCCCCCCGGCGGC AACCGATGCAAAAGCCTCGCCACCCCCTTCCCTCCCAATCCCGGAATCTC CAAATAAATATACTGCTGCTCCGGGCTCAATCCCATTTCTGGCAATGATT TCCCTGCCGGCACGTGCTCAAAAAACACACCAAGAGGTTCCCCTCTTTTC TCAAACGCCTCTCTCACCCCCGCAGCCTTCGCAGCCGGCACGGGGATAAT CTGCGCATGCGTATGCCTTGCACCCCTCGTCTCCAACCTCCGTTCGAACA ACACCATCCGCTGCCCCTCTTCTTCTCCATCTCCCTCCTCTTCACCCTCC TTCTGCTCGGCATACATCAACCGTAATGCCTTGGTGTACTTTTCAAATTC CTCCCATTCCACCGGACTCAATTGCGCAAGCCCCGCCACATGATTGATTG GAATCAAAAGAACATGTTCTCGACACAAAGGTCCTTTGGGCACAGCCATG TACAAACTCTCCCCCACAGTCACCAACAGCTCCACCTCCGCTTTCTCTGT CCCAAGGCAAAACCAACACTCAATCGGTGACTGTGGTGGCGGCGGTGGGC CTCCCCGCCCTCCAACCATTCCTCCTCCGGGCCCTCCCATATTCATCATC TGAGGATACACCATTCCACTTGCTGGGCCGTAATGCCCTCCCCCTCCTCC TCCCATTCCTCCCATCCCTAGCGGCGGCGACGGCGGCAACGGCGGCCCAG CCATCATCGAGCCCCTCATCCCTCCTCTCCCCATTCCTCCTCCCCCAGGG CCACCATTACCAATAACCGGAGGAACCATACTTCTCGACGAGCTCTTACT CCAACTCATCTTGGCACCCTGGAACCCCAATGTTATCCCCCGGCTCTCCA AGGCCTTTTTCGCCTCCTCATGCGTCCCAAACGAGACAAACGCAAAGTCC TTCCCCTCCGGTACTTTCACGCGCGTCACTGTGCCGTAGTGACTCAAGCC CCTCTGCAAATCCTCTGCCGGGAATCCCACGGGCAATTTAGCTATGTGCA ACGTAGTGCAATTGGGGTCCACTTCCTGCTGCTGCTGCTGGTGCTGCTGG TGCTGCCCTCGCCCCCCTCCTACTCCTCGACCACCCTTTCCTCCACCCCA AAAAAAAATCCCCGAGTCTCCCCGCTTCGACTCTTCTTCCCGTTGGATCT GCTGCATTGATTCATAAGTTAGAACTCCCACCTCCCCACCCGCTTCTCCT CGTAACTTCTTAAGTGCCCCGCCTTCCTCCTGCCTTCCCACCTCCCCTCC ACTTCGCTTCGCGTCCTTGAACACAGAATAAGGAGACTCGGTGACATCCA CGGGTTCTTCCACTAGTGCCTCCAAGGTCATGTAAGGCAGTGGCTCTATA CTTATGGCATGTAGCCACTTCTTGCTCTTCTCCTTGGATTCCGACACGGG GGCCAAGCTAACAAATCGCGTAACATGACTCAACTTCGTCTTGGGCTTCG TCGCATGGTTCTTGTACGGAGGCCGCTGGAAAAACAAGCTCGGACGAGCC GCAAAATGATAGCGAGGACGAAGGACGACAGCCAAGTCCGCCACTGTGGA AGAGCCGACGTCTGCAGCGTTGCTGATGCCGGATTCGGAGAGGTAGGAAT CATGCCCCGCCGCCACATGCTGCCCCCAATCAGTCGTAAAAAATAAGTCC GCGCCTAGAAACGTGGAGGTACTCGCAGGTTCTAAAATCTTGGCGATATC CTTGTCAGTATGGCGTTGACTCAAATATCCCACGGTCAATTTGCCCACCA ACTCCAACCCCCCCGGGCCAAGGTACTTGCAGTTGGGACACAGCTCGCTT CCGGGCAATACGCTGCCGTACTTGGCCTCAGCGCTGGTGGAGGGTCCTTC CATAAAATAGGTAGGGACAGGAACTTCCTTGACGCCCATCAAGTAGTCTT CGAAGGCAGTGGATGCTACCCCGCCCTCGGGTTCGTCGGCAGGAGGGAAG AATTCACCCGTGATGAACAAGGCGTCGAAGGGCCCCGCTTTGGAGGCGTG CAGTGTGGCTACCCGATTAAAAAGGAGGTCTAGGCGGCCCTTAGTTTCGC CCGCGACCAGCACCTTCATGGCTGGAAAAACTCTGGATTACTTGTTGATT CCGGGCGCAGGGGTTGATGCGGTAGACTCTTTTTTGGGGGGTTAACGGTG GGTAGGACAAGGGAAAGCAAGAGGAGGTCAGGCATGCTTAAGAGGGGAAG GCGTTGTAAGATTAATAGCAAGTAGCAGCCTATCATCATAAATAAAGGCG TGGGTGAATGGCAGGGGCATGTGAAATTCTTGCCTTTGGGGACCTCACAT GACTCCCCCCGTGCGCCTTACGTTCTACGAAACCTCCCCACTCCTCCACC CATGCAAATCTCTCCAGTCCACCCTACAACCACCACAGGACAATGGCCAC AACCAAAGGACCCCCAGGACAAGACATATATCCTCATCATTCGAAAAACG TGCCTCCAGCTGAAGAATTCAACACAGAAGACGCATTGTTCATGAAACTA GCCTTGGAGGAGGGGAGTAAAGCCATACAGGAAGGCGAGGTGCCCGTAGG CGTGGTTTTTGTCCATTATCCCTTCTCGTCCTCCCTACTTCCTTCATCGA ATATCAACAGTTCCAAACCATCTTCTATCCTTTCTCATCTTTCTGCTCGA GTCCTGGGACGAGGGCACAACCGCACCAATGTCACCAAAAATGGGACCCG GCACGCAGAGCTCGTGGTGGCGGATGAAATTCTCGCCCTTGGAACGCCGA TCGGCGTCTTCCAAGATTGTGATGTGTATGTAACATGTGAGCCCTGCATT ATGTGTGCGGGTGCTTTGGGTCTCTTGAAAATTCGGCGTGTGGTATTCGG TTGTAAGAATGAGCGGTTTGGTGGGTGTGGGTCGATTTTGAATGTGCACG AGGCCCCCCATTTGAGGCATCGGTATGTGGCGCAAGCGGGTTTGATGGAG GAAGAGGCCGTGACACTATTCAAAAACTTCTATGCACGAGAAAATCAGCA AGCACCCGTGTCCAAACGAAGGAAAAAAGGGCAAGGCATCAACGAAGAGG GCCAAGAAACAATTCATAGAGTACCCTCAGCAGCAGCAGCAGCAGCAACA ACAACAACAGAATCAAAAAATGCCTATGATACACCTTCGTGACACGGAAA TAGAGAGAGTAAAAATTAAGAATACAATAAGGT back to topprotein sequence of NO14G02100.1 >NO14G02100.1-protein ID=NO14G02100.1-protein|Name=NO14G02100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=250bp MATTKGPPGQDIYPHHSKNVPPAEEFNTEDALFMKLALEEGSKAIQEGEV PVGVVFVHYPFSSSLLPSSNINSSKPSSILSHLSARVLGRGHNRTNVTKN GTRHAELVVADEILALGTPIGVFQDCDVYVTCEPCIMCAGALGLLKIRRV VFGCKNERFGGCGSILNVHEAPHLRHRYVAQAGLMEEEAVTLFKNFYARE NQQAPVSKRRKKGQGINEEGQETIHRVPSAAAAAATTTTESKNAYDTPS* back to topmRNA from alignment at chr14:633497..637271- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO14G02100.1 ID=NO14G02100.1|Name=NO14G02100.1|organism=Nannochloropsis oceanica|type=mRNA|length=3775bp|location=Sequence derived from alignment at chr14:633497..637271- (Nannochloropsis oceanica) GCTGCTGCTGCTGCTGCTGCCACCACTACAACCACTACTACTGCTGCTCC
TGCTGCTGCTGTTGTACCTACAGGTGGTGTAAACGATTTAGCTCTAGACA
ACTAGACAACATTGAATACGGGAAGGGATATGCGTAAATGTTGTGGGAAA
ACCTGCCCATAAGACTTCGACAAACACGGTATGCACATTCCTTGCTCGTC
CACGTGAACATTTCCTCTTCCTCCGCCTCGCCTAGCTCTAACCTCTCCCA
ATATACAGCCCCAACCTTCCCACTCTCTCCTTTCCTCGCTCCCTCGCTCC
TTTCCTACCACGGCTACCCCCACTACTACTCCCCTTCGCTAAAATCCCAT
TTCTCCCACTCCTTTTTCAATCGCTCCACCATCTCCTTTTCCGCCTCTTT
GCCCAACATACAATTTTTCCAATTTACCTTCTGTGGCACCCCCAGTAACT
CCGCAAGCACGTCTCTCCCATACGTCAGTGGCAGTCTTCCCCCCGGCGGC
AACCGATGCAAAAGCCTCGCCACCCCCTTCCCTCCCAATCCCGGAATCTC
CAAATAAATATACTGCTGCTCCGGGCTCAATCCCATTTCTGGCAATGATT
TCCCTGCCGGCACGTGCTCAAAAAACACACCAAGAGGTTCCCCTCTTTTC
TCAAACGCCTCTCTCACCCCCGCAGCCTTCGCAGCCGGCACGGGGATAAT
CTGCGCATGCGTATGCCTTGCACCCCTCGTCTCCAACCTCCGTTCGAACA
ACACCATCCGCTGCCCCTCTTCTTCTCCATCTCCCTCCTCTTCACCCTCC
TTCTGCTCGGCATACATCAACCGTAATGCCTTGGTGTACTTTTCAAATTC
CTCCCATTCCACCGGACTCAATTGCGCAAGCCCCGCCACATGATTGATTG
GAATCAAAAGAACATGTTCTCGACACAAAGGTCCTTTGGGCACAGCCATG
TACAAACTCTCCCCCACAGTCACCAACAGCTCCACCTCCGCTTTCTCTGT
CCCAAGGCAAAACCAACACTCAATCGGTGACTGTGGTGGCGGCGGTGGGC
CTCCCCGCCCTCCAACCATTCCTCCTCCGGGCCCTCCCATATTCATCATC
TGAGGATACACCATTCCACTTGCTGGGCCGTAATGCCCTCCCCCTCCTCC
TCCCATTCCTCCCATCCCTAGCGGCGGCGACGGCGGCAACGGCGGCCCAG
CCATCATCGAGCCCCTCATCCCTCCTCTCCCCATTCCTCCTCCCCCAGGG
CCACCATTACCAATAACCGGAGGAACCATACTTCTCGACGAGCTCTTACT
CCAACTCATCTTGGCACCCTGGAACCCCAATGTTATCCCCCGGCTCTCCA
AGGCCTTTTTCGCCTCCTCATGCGTCCCAAACGAGACAAACGCAAAGTCC
TTCCCCTCCGGTACTTTCACGCGCGTCACTGTGCCGTAGTGACTCAAGCC
CCTCTGCAAATCCTCTGCCGGGAATCCCACGGGCAATTTAGCTATGTGCA
ACGTAGTGCAATTGGGGTCCACTTCCTGCTGCTGCTGCTGGTGCTGCTGG
TGCTGCCCTCGCCCCCCTCCTACTCCTCGACCACCCTTTCCTCCACCCCA
AAAAAAAATCCCCGAGTCTCCCCGCTTCGACTCTTCTTCCCGTTGGATCT
GCTGCATTGATTCATAAGTTAGAACTCCCACCTCCCCACCCGCTTCTCCT
CGTAACTTCTTAAGTGCCCCGCCTTCCTCCTGCCTTCCCACCTCCCCTCC
ACTTCGCTTCGCGTCCTTGAACACAGAATAAGGAGACTCGGTGACATCCA
CGGGTTCTTCCACTAGTGCCTCCAAGGTCATGTAAGGCAGTGGCTCTATA
CTTATGGCATGTAGCCACTTCTTGCTCTTCTCCTTGGATTCCGACACGGG
GGCCAAGCTAACAAATCGCGTAACATGACTCAACTTCGTCTTGGGCTTCG
TCGCATGGTTCTTGTACGGAGGCCGCTGGAAAAACAAGCTCGGACGAGCC
GCAAAATGATAGCGAGGACGAAGGACGACAGCCAAGTCCGCCACTGTGGA
AGAGCCGACGTCTGCAGCGTTGCTGATGCCGGATTCGGAGAGGTAGGAAT
CATGCCCCGCCGCCACATGCTGCCCCCAATCAGTCGTAAAAAATAAGTCC
GCGCCTAGAAACGTGGAGGTACTCGCAGGTTCTAAAATCTTGGCGATATC
CTTGTCAGTATGGCGTTGACTCAAATATCCCACGGTCAATTTGCCCACCA
ACTCCAACCCCCCCGGGCCAAGGTACTTGCAGTTGGGACACAGCTCGCTT
CCGGGCAATACGCTGCCGTACTTGGCCTCAGCGCTGGTGGAGGGTCCTTC
CATAAAATAGGTAGGGACAGGAACTTCCTTGACGCCCATCAAGTAGTCTT
CGAAGGCAGTGGATGCTACCCCGCCCTCGGGTTCGTCGGCAGGAGGGAAG
AATTCACCCGTGATGAACAAGGCGTCGAAGGGCCCCGCTTTGGAGGCGTG
CAGTGTGGCTACCCGATTAAAAAGGAGGTCTAGGCGGCCCTTAGTTTCGC
CCGCGACCAGCACCTTCATGGCTGGAAAAACTCTGGATTACTTGTTGATT
CCGGGCGCAGGGGTTGATGCGGTAGACTCTTTTTTGGGGGGTTAACGGTG
GGTAGGACAAGGGAAAGCAAGAGGAGGTCAGGCATGCTTAAGAGGGGAAG
GCGTTGTAAGATTAATAGCAAGTAGCAGCCTATCATCATAAATAAAGGCG
TGGGTGAATGGCAGGGGCATGTGAAATTCTTGCCTTTGGGGACCTCACAT
GACTCCCCCCGTGCGCCTTACGTTCTACGAAACCTCCCCACTCCTCCACC
CATGCAAATCTCTCCAGTCCACCCTACAACCACCACAGGACAATGGCCAC
AACCAAAGGACCCCCAGGACAAGACATATATCCTCATCATTCGAAAAACG
TGCCTCCAGCTGAAGAATTCAACACAGAAGACGCATTGTTCATGAAACTA
GCCTTGGAGGAGGGGAGTAAAGCCATACAGGAAGGCGAGGTGCCCGTAGG
CGTGGTTTTTGTCCATTATCCCTTCTCGTCCTCCCTACTTCCTTCATCGA
ATATCAACAGTTCCAAACCATCTTCTATCCTTTCTCATCTTTCTGCTCGA
GTCCTGGGACGAGGGCACAACCGCACCAATGTCACCAAAAATGGGACCCG
GCACGCAGAGCTCGTGGTGGCGGATGAAATTCTCGCCCTTGGAACGCCGA
TCGGCGTCTTCCAAGATTGTGATGTGTATGTAACATGTGAGCCCTGCATT
ATGTGTGCGGGTGCTTTGGGTCTCTTGAAAATTCGGCGTGTGGTATTCGG
TTGTAAGAATGAGCGGTTTGGTGGGTGTGGGTCGATTTTGAATGTGCACG
AGGCCCCCCATTTGAGGCATCGGTATGTGGCGCAAGCGGGTTTGATGGAG
GAAGAGGCCGTGACACTATTCAAAAACTTCTATGCACGAGAAAATCAGCA
AGGTACGAGCGAGGAGATACGATCTTGATGGCTCTCATGTCGATCTCTTC
TAATCCTTTCCTTCATACTACCCCACACTCGTTAACCCTCACAGCACCCG
TGTCCAAACGAAGGAAAAAAGGGCAAGGCATCAACGAAGAGGGCCAAGAA
ACAATTCATAGAGTACCCTCAGCAGCAGCAGCAGCAGCAACAACAACAAC
AGAATCAAAAAATGCCTATGATACACCTTCGTGACACGGAAATAGAGAGA
GTAAAAATTAAGAATACAATAAGGT back to topCoding sequence (CDS) from alignment at chr14:633497..637271- >NO14G02100.1 ID=NO14G02100.1|Name=NO14G02100.1|organism=Nannochloropsis oceanica|type=CDS|length=750bp|location=Sequence derived from alignment at chr14:633497..637271- (Nannochloropsis oceanica) ATGGCCACAACCAAAGGACCCCCAGGACAAGACATATATCCTCATCATTC GAAAAACGTGCCTCCAGCTGAAGAATTCAACACAGAAGACGCATTGTTCA TGAAACTAGCCTTGGAGGAGGGGAGTAAAGCCATACAGGAAGGCGAGGTG CCCGTAGGCGTGGTTTTTGTCCATTATCCCTTCTCGTCCTCCCTACTTCC TTCATCGAATATCAACAGTTCCAAACCATCTTCTATCCTTTCTCATCTTT CTGCTCGAGTCCTGGGACGAGGGCACAACCGCACCAATGTCACCAAAAAT GGGACCCGGCACGCAGAGCTCGTGGTGGCGGATGAAATTCTCGCCCTTGG AACGCCGATCGGCGTCTTCCAAGATTGTGATGTGTATGTAACATGTGAGC CCTGCATTATGTGTGCGGGTGCTTTGGGTCTCTTGAAAATTCGGCGTGTG GTATTCGGTTGTAAGAATGAGCGGTTTGGTGGGTGTGGGTCGATTTTGAA TGTGCACGAGGCCCCCCATTTGAGGCATCGGTATGTGGCGCAAGCGGGTT TGATGGAGGAAGAGGCCGTGACACTATTCAAAAACTTCTATGCACGAGAA AATCAGCAAGCACCCGTGTCCAAACGAAGGAAAAAAGGGCAAGGCATCAA CGAAGAGGGCCAAGAAACAATTCATAGAGTACCCTCAGCAGCAGCAGCAG CAGCAACAACAACAACAGAATCAAAAAATGCCTATGATACACCTTCGTGA back to top
|