NO14G02050.1, NO14G02050.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G02050.1
Unique NameNO14G02050.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2160
Alignment locationchr14:623192..625351 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:623192..625351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO14G02050.1 vs.
Match: EWM24588.1 (transketolase [Nannochloropsis gaditana])

HSP 1 Score: 1179.9 bits (3051), Expect = 0.000e+0
Identity = 582/715 (81.40%), Postives = 650/715 (90.91%), Query Frame = 0
Query:    6 PSEETTNGSASKKGKESLVSALSTKAVDTVRVLSADIVQKANSGHPGAPMSLAPLAYLLWTKVMKYNPQDPEWLARDRFVLSNGHACALLYGMLHLTGYPQVTMDDLKNFRQIDSITAGHPENTLIKGIEVSTGPLGQGISNAVGLAIAESHLAAVFNKEGHAKVIDNYTYVICGDGCLQEGVSSEASSLAGHLGLGKLIVYYDDNRITIDGDTGLSFTEDVEKRYEAYGWHVQTVDDVQDLDSLMAATEAAKAVTDKPSMIKVKTEIGFGSKKQGSHSVHGSPLGAEDLKQLKEKFGFNPEETFLVAPEVSELFLAAGARGAAAQAAWQMGLDGYKGAYPKETAELVRQCEHKMPDGWKEALPRYSATDKAMATRKFSEIALNALAPIMPELVGGSADLTPSTLTALACSGDYQKETPAGRYFRFGVREHGMTAVANGIFAYGALRPFVATFLNFIGYAWGSVRLTALSHLGVIFVMTHDSIGLGEDGPTHQPVEILEQCRVMPNLNLIRPADGNEVSGAYISAVDHPFTPTVLALSRQNLPNLEGSSVEKTLLGAYVLSEAGGNEEEGG-PELILTGSGSEVAIAVEAAKKLVAEGVRVRVVSFPSWELFEQQEKDYRLEVFPVGVPVVSVEASSIHGWAKYSHAALGLTWFGASGPYTKVYEKFGLTVENLAEKAKEVMSFYKDGGKPVPSLIDVPVISGHYEHKPVATSQA 720
            PS++  NGSA+KKGK+SLV+ LSTKAV+TVRVL AD+VQKANSGHPGAPMSLAPLAYLLWT+VMKYNP+DP+WLARDRFVLSNGHACALLY MLHLTGY QVTMD LK FRQ+DSITAGHPENTLIKG+EVSTGPLGQGISNAVGLA+AE HL AVFNK GHAK++DNYTYVICGDGCLQEGVSSEASSLAGHLGLG+LIV+YDDN+ITIDGDT LSFTEDV KRYEAYGWHVQT++DVQDLD+L+AATEAAKA TD+PSMIK++T IGFGSKK+GSHSVHGSPLGAEDLKQLK +FGF+PE+ F+V  EV+ELF AAGA+GAAAQAAW   ++ YKGA+P E +ELVR  EH++P+GW+E LPRY+  DKAMATRKFSEIALN LAP++PELVGGSADLTPSTLTALACSGD+QK+TP GRY RFGVREHGMTA+ANG+FAYGALRPFVATFLNFIGYAWG+VRL+ LSHLGVIFVMTHDSIGLGEDGPTHQPVE LEQ R MPNL+L+RPADGNEVSGAYISA++HP+TP+VLALSRQNLPNLEG+S EKTLLGAYVL+E GG+   GG PELILTGSGSEVAIAVEAAK L AE VRVRVVSFPSWELF+QQ K+YRL VFP GVPVVSVEAS+ HGWAKYSHAALGLTWFGASGPY KVY K+GLT +NL  KA+EV++FY  G + VPSLIDVP IS   +HKPVATS A
Sbjct:   12 PSKDA-NGSAAKKGKQSLVTPLSTKAVNTVRVLCADMVQKANSGHPGAPMSLAPLAYLLWTQVMKYNPKDPQWLARDRFVLSNGHACALLYAMLHLTGYAQVTMDALKAFRQVDSITAGHPENTLIKGVEVSTGPLGQGISNAVGLAMAEMHLGAVFNKSGHAKIVDNYTYVICGDGCLQEGVSSEASSLAGHLGLGRLIVFYDDNQITIDGDTALSFTEDVAKRYEAYGWHVQTLEDVQDLDALLAATEAAKAETDRPSMIKIRTRIGFGSKKEGSHSVHGSPLGAEDLKQLKSRFGFDPEQAFVVPTEVAELFQAAGAKGAAAQAAWNTAMEAYKGAFPAEASELVRCTEHRLPEGWREKLPRYTPEDKAMATRKFSEIALNVLAPMLPELVGGSADLTPSTLTALACSGDFQKKTPDGRYVRFGVREHGMTALANGMFAYGALRPFVATFLNFIGYAWGAVRLSCLSHLGVIFVMTHDSIGLGEDGPTHQPVETLEQIRAMPNLHLLRPADGNEVSGAYISALEHPYTPSVLALSRQNLPNLEGTSAEKTLLGAYVLAEMGGSNGGGGAPELILTGSGSEVAIAVEAAKTL-AETVRVRVVSFPSWELFDQQNKEYRLSVFPAGVPVVSVEASATHGWAKYSHAALGLTWFGASGPYAKVYAKYGLTADNLVSKAREVLAFYA-GDRQVPSLIDVPFISKQLDHKPVATSHA 723          
The following BLAST results are available for this feature:
BLAST of NO14G02050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24588.10.000e+081.40transketolase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02050NO14G02050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G02050.1NO14G02050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G02050.1.cds1NO14G02050.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G02050.1 ID=NO14G02050.1|Name=NO14G02050.1|organism=Nannochloropsis oceanica|type=mRNA|length=2160bp
ATGTCGACCAAGCGCCCCTCCGAAGAGACCACCAATGGGTCCGCGTCCAA
GAAAGGGAAGGAATCCCTCGTCAGCGCCCTCTCCACCAAGGCCGTCGACA
CTGTCCGCGTCCTCTCCGCCGACATCGTGCAAAAAGCCAACAGCGGGCAC
CCTGGTGCACCCATGAGCTTGGCCCCGCTTGCTTATCTGCTGTGGACCAA
AGTCATGAAGTACAACCCCCAGGACCCTGAATGGCTGGCGCGCGATCGTT
TCGTCTTGTCCAACGGCCACGCTTGTGCCTTGCTTTATGGAATGTTGCAT
CTCACGGGCTACCCTCAGGTGACGATGGACGATTTGAAGAACTTCAGGCA
GATTGATTCGATCACGGCGGGGCATCCGGAGAACACTCTAATCAAGGGGA
TTGAGGTCTCAACGGGGCCATTGGGGCAGGGGATCTCGAACGCAGTGGGT
TTAGCGATTGCTGAGAGCCACTTGGCAGCTGTGTTTAACAAGGAGGGCCA
CGCTAAGGTGATTGACAACTATACCTATGTGATTTGTGGGGACGGGTGCT
TGCAGGAGGGGGTGTCGAGCGAGGCCAGTTCTCTGGCGGGGCATTTGGGA
CTGGGGAAATTAATTGTTTACTATGACGACAACCGGATCACGATTGATGG
GGATACGGGATTGTCGTTCACGGAGGATGTGGAGAAGAGGTACGAGGCTT
ATGGGTGGCATGTGCAGACCGTGGATGACGTCCAGGACCTTGATTCGTTG
ATGGCAGCGACGGAGGCAGCCAAGGCCGTGACGGACAAGCCGAGCATGAT
CAAAGTGAAGACGGAGATCGGGTTTGGGAGCAAGAAGCAGGGGTCGCATT
CTGTCCACGGGTCGCCGTTGGGGGCGGAGGATCTGAAGCAGTTGAAGGAA
AAATTTGGATTCAACCCGGAGGAGACGTTCCTGGTAGCCCCTGAGGTGAG
TGAGTTGTTTTTGGCGGCGGGCGCGAGGGGGGCGGCGGCGCAGGCGGCTT
GGCAGATGGGGTTGGACGGATATAAGGGAGCTTACCCCAAGGAGACTGCG
GAGTTGGTGCGACAGTGTGAGCACAAGATGCCGGATGGGTGGAAGGAGGC
GTTGCCGCGGTATAGCGCGACGGACAAGGCCATGGCGACGAGGAAGTTCT
CGGAGATTGCGCTGAACGCATTGGCGCCCATCATGCCGGAGTTGGTTGGG
GGGTCGGCGGATCTGACGCCTTCGACGCTGACAGCTTTGGCATGTTCGGG
CGATTATCAGAAGGAGACTCCCGCGGGGAGGTATTTCAGGTTTGGAGTGA
GGGAGCATGGGATGACGGCGGTGGCAAACGGGATATTCGCCTACGGGGCG
TTGAGACCCTTTGTCGCGACGTTTTTGAATTTCATTGGTTATGCCTGGGG
TTCTGTGAGGTTGACTGCATTGTCTCACTTGGGGGTAATTTTTGTGATGA
CGCACGATTCAATCGGATTGGGGGAGGACGGACCCACGCACCAGCCGGTG
GAGATCCTGGAGCAGTGTCGGGTGATGCCTAATTTGAACTTAATCAGACC
TGCAGATGGGAACGAGGTGTCGGGTGCTTACATATCGGCAGTCGACCATC
CCTTCACGCCCACGGTGTTGGCCTTGAGTCGACAGAACCTGCCGAATCTG
GAGGGGAGCAGCGTGGAGAAAACTCTGTTAGGCGCTTATGTCCTGTCGGA
GGCGGGAGGCAATGAAGAGGAGGGGGGGCCAGAACTCATTTTAACGGGTT
CGGGTTCGGAGGTAGCGATTGCGGTCGAGGCAGCCAAGAAGCTGGTGGCG
GAGGGGGTTAGGGTGCGTGTGGTGAGTTTCCCTAGTTGGGAGCTGTTCGA
GCAGCAGGAGAAGGATTACAGGTTGGAAGTTTTCCCGGTGGGAGTGCCGG
TTGTGAGTGTTGAGGCATCTTCGATCCATGGCTGGGCGAAGTACTCGCAT
GCAGCTCTGGGCTTGACCTGGTTTGGGGCCTCGGGGCCTTATACAAAGGT
GTATGAGAAATTTGGGTTGACGGTCGAAAATCTGGCGGAGAAGGCGAAGG
AGGTGATGTCTTTCTATAAGGATGGGGGTAAGCCGGTACCGAGTTTGATT
GACGTGCCCGTGATTTCGGGTCACTATGAGCACAAACCGGTGGCCACCTC
ACAGGCATAA
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protein sequence of NO14G02050.1

>NO14G02050.1-protein ID=NO14G02050.1-protein|Name=NO14G02050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=720bp
MSTKRPSEETTNGSASKKGKESLVSALSTKAVDTVRVLSADIVQKANSGH
PGAPMSLAPLAYLLWTKVMKYNPQDPEWLARDRFVLSNGHACALLYGMLH
LTGYPQVTMDDLKNFRQIDSITAGHPENTLIKGIEVSTGPLGQGISNAVG
LAIAESHLAAVFNKEGHAKVIDNYTYVICGDGCLQEGVSSEASSLAGHLG
LGKLIVYYDDNRITIDGDTGLSFTEDVEKRYEAYGWHVQTVDDVQDLDSL
MAATEAAKAVTDKPSMIKVKTEIGFGSKKQGSHSVHGSPLGAEDLKQLKE
KFGFNPEETFLVAPEVSELFLAAGARGAAAQAAWQMGLDGYKGAYPKETA
ELVRQCEHKMPDGWKEALPRYSATDKAMATRKFSEIALNALAPIMPELVG
GSADLTPSTLTALACSGDYQKETPAGRYFRFGVREHGMTAVANGIFAYGA
LRPFVATFLNFIGYAWGSVRLTALSHLGVIFVMTHDSIGLGEDGPTHQPV
EILEQCRVMPNLNLIRPADGNEVSGAYISAVDHPFTPTVLALSRQNLPNL
EGSSVEKTLLGAYVLSEAGGNEEEGGPELILTGSGSEVAIAVEAAKKLVA
EGVRVRVVSFPSWELFEQQEKDYRLEVFPVGVPVVSVEASSIHGWAKYSH
AALGLTWFGASGPYTKVYEKFGLTVENLAEKAKEVMSFYKDGGKPVPSLI
DVPVISGHYEHKPVATSQA*
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mRNA from alignment at chr14:623192..625351+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G02050.1 ID=NO14G02050.1|Name=NO14G02050.1|organism=Nannochloropsis oceanica|type=mRNA|length=2160bp|location=Sequence derived from alignment at chr14:623192..625351+ (Nannochloropsis oceanica)
ATGTCGACCAAGCGCCCCTCCGAAGAGACCACCAATGGGTCCGCGTCCAA GAAAGGGAAGGAATCCCTCGTCAGCGCCCTCTCCACCAAGGCCGTCGACA CTGTCCGCGTCCTCTCCGCCGACATCGTGCAAAAAGCCAACAGCGGGCAC CCTGGTGCACCCATGAGCTTGGCCCCGCTTGCTTATCTGCTGTGGACCAA AGTCATGAAGTACAACCCCCAGGACCCTGAATGGCTGGCGCGCGATCGTT TCGTCTTGTCCAACGGCCACGCTTGTGCCTTGCTTTATGGAATGTTGCAT CTCACGGGCTACCCTCAGGTGACGATGGACGATTTGAAGAACTTCAGGCA GATTGATTCGATCACGGCGGGGCATCCGGAGAACACTCTAATCAAGGGGA TTGAGGTCTCAACGGGGCCATTGGGGCAGGGGATCTCGAACGCAGTGGGT TTAGCGATTGCTGAGAGCCACTTGGCAGCTGTGTTTAACAAGGAGGGCCA CGCTAAGGTGATTGACAACTATACCTATGTGATTTGTGGGGACGGGTGCT TGCAGGAGGGGGTGTCGAGCGAGGCCAGTTCTCTGGCGGGGCATTTGGGA CTGGGGAAATTAATTGTTTACTATGACGACAACCGGATCACGATTGATGG GGATACGGGATTGTCGTTCACGGAGGATGTGGAGAAGAGGTACGAGGCTT ATGGGTGGCATGTGCAGACCGTGGATGACGTCCAGGACCTTGATTCGTTG ATGGCAGCGACGGAGGCAGCCAAGGCCGTGACGGACAAGCCGAGCATGAT CAAAGTGAAGACGGAGATCGGGTTTGGGAGCAAGAAGCAGGGGTCGCATT CTGTCCACGGGTCGCCGTTGGGGGCGGAGGATCTGAAGCAGTTGAAGGAA AAATTTGGATTCAACCCGGAGGAGACGTTCCTGGTAGCCCCTGAGGTGAG TGAGTTGTTTTTGGCGGCGGGCGCGAGGGGGGCGGCGGCGCAGGCGGCTT GGCAGATGGGGTTGGACGGATATAAGGGAGCTTACCCCAAGGAGACTGCG GAGTTGGTGCGACAGTGTGAGCACAAGATGCCGGATGGGTGGAAGGAGGC GTTGCCGCGGTATAGCGCGACGGACAAGGCCATGGCGACGAGGAAGTTCT CGGAGATTGCGCTGAACGCATTGGCGCCCATCATGCCGGAGTTGGTTGGG GGGTCGGCGGATCTGACGCCTTCGACGCTGACAGCTTTGGCATGTTCGGG CGATTATCAGAAGGAGACTCCCGCGGGGAGGTATTTCAGGTTTGGAGTGA GGGAGCATGGGATGACGGCGGTGGCAAACGGGATATTCGCCTACGGGGCG TTGAGACCCTTTGTCGCGACGTTTTTGAATTTCATTGGTTATGCCTGGGG TTCTGTGAGGTTGACTGCATTGTCTCACTTGGGGGTAATTTTTGTGATGA CGCACGATTCAATCGGATTGGGGGAGGACGGACCCACGCACCAGCCGGTG GAGATCCTGGAGCAGTGTCGGGTGATGCCTAATTTGAACTTAATCAGACC TGCAGATGGGAACGAGGTGTCGGGTGCTTACATATCGGCAGTCGACCATC CCTTCACGCCCACGGTGTTGGCCTTGAGTCGACAGAACCTGCCGAATCTG GAGGGGAGCAGCGTGGAGAAAACTCTGTTAGGCGCTTATGTCCTGTCGGA GGCGGGAGGCAATGAAGAGGAGGGGGGGCCAGAACTCATTTTAACGGGTT CGGGTTCGGAGGTAGCGATTGCGGTCGAGGCAGCCAAGAAGCTGGTGGCG GAGGGGGTTAGGGTGCGTGTGGTGAGTTTCCCTAGTTGGGAGCTGTTCGA GCAGCAGGAGAAGGATTACAGGTTGGAAGTTTTCCCGGTGGGAGTGCCGG TTGTGAGTGTTGAGGCATCTTCGATCCATGGCTGGGCGAAGTACTCGCAT GCAGCTCTGGGCTTGACCTGGTTTGGGGCCTCGGGGCCTTATACAAAGGT GTATGAGAAATTTGGGTTGACGGTCGAAAATCTGGCGGAGAAGGCGAAGG AGGTGATGTCTTTCTATAAGGATGGGGGTAAGCCGGTACCGAGTTTGATT GACGTGCCCGTGATTTCGGGTCACTATGAGCACAAACCGGTGGCCACCTC ACAGGCATAA
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Coding sequence (CDS) from alignment at chr14:623192..625351+

>NO14G02050.1 ID=NO14G02050.1|Name=NO14G02050.1|organism=Nannochloropsis oceanica|type=CDS|length=2160bp|location=Sequence derived from alignment at chr14:623192..625351+ (Nannochloropsis oceanica)
ATGTCGACCAAGCGCCCCTCCGAAGAGACCACCAATGGGTCCGCGTCCAA
GAAAGGGAAGGAATCCCTCGTCAGCGCCCTCTCCACCAAGGCCGTCGACA
CTGTCCGCGTCCTCTCCGCCGACATCGTGCAAAAAGCCAACAGCGGGCAC
CCTGGTGCACCCATGAGCTTGGCCCCGCTTGCTTATCTGCTGTGGACCAA
AGTCATGAAGTACAACCCCCAGGACCCTGAATGGCTGGCGCGCGATCGTT
TCGTCTTGTCCAACGGCCACGCTTGTGCCTTGCTTTATGGAATGTTGCAT
CTCACGGGCTACCCTCAGGTGACGATGGACGATTTGAAGAACTTCAGGCA
GATTGATTCGATCACGGCGGGGCATCCGGAGAACACTCTAATCAAGGGGA
TTGAGGTCTCAACGGGGCCATTGGGGCAGGGGATCTCGAACGCAGTGGGT
TTAGCGATTGCTGAGAGCCACTTGGCAGCTGTGTTTAACAAGGAGGGCCA
CGCTAAGGTGATTGACAACTATACCTATGTGATTTGTGGGGACGGGTGCT
TGCAGGAGGGGGTGTCGAGCGAGGCCAGTTCTCTGGCGGGGCATTTGGGA
CTGGGGAAATTAATTGTTTACTATGACGACAACCGGATCACGATTGATGG
GGATACGGGATTGTCGTTCACGGAGGATGTGGAGAAGAGGTACGAGGCTT
ATGGGTGGCATGTGCAGACCGTGGATGACGTCCAGGACCTTGATTCGTTG
ATGGCAGCGACGGAGGCAGCCAAGGCCGTGACGGACAAGCCGAGCATGAT
CAAAGTGAAGACGGAGATCGGGTTTGGGAGCAAGAAGCAGGGGTCGCATT
CTGTCCACGGGTCGCCGTTGGGGGCGGAGGATCTGAAGCAGTTGAAGGAA
AAATTTGGATTCAACCCGGAGGAGACGTTCCTGGTAGCCCCTGAGGTGAG
TGAGTTGTTTTTGGCGGCGGGCGCGAGGGGGGCGGCGGCGCAGGCGGCTT
GGCAGATGGGGTTGGACGGATATAAGGGAGCTTACCCCAAGGAGACTGCG
GAGTTGGTGCGACAGTGTGAGCACAAGATGCCGGATGGGTGGAAGGAGGC
GTTGCCGCGGTATAGCGCGACGGACAAGGCCATGGCGACGAGGAAGTTCT
CGGAGATTGCGCTGAACGCATTGGCGCCCATCATGCCGGAGTTGGTTGGG
GGGTCGGCGGATCTGACGCCTTCGACGCTGACAGCTTTGGCATGTTCGGG
CGATTATCAGAAGGAGACTCCCGCGGGGAGGTATTTCAGGTTTGGAGTGA
GGGAGCATGGGATGACGGCGGTGGCAAACGGGATATTCGCCTACGGGGCG
TTGAGACCCTTTGTCGCGACGTTTTTGAATTTCATTGGTTATGCCTGGGG
TTCTGTGAGGTTGACTGCATTGTCTCACTTGGGGGTAATTTTTGTGATGA
CGCACGATTCAATCGGATTGGGGGAGGACGGACCCACGCACCAGCCGGTG
GAGATCCTGGAGCAGTGTCGGGTGATGCCTAATTTGAACTTAATCAGACC
TGCAGATGGGAACGAGGTGTCGGGTGCTTACATATCGGCAGTCGACCATC
CCTTCACGCCCACGGTGTTGGCCTTGAGTCGACAGAACCTGCCGAATCTG
GAGGGGAGCAGCGTGGAGAAAACTCTGTTAGGCGCTTATGTCCTGTCGGA
GGCGGGAGGCAATGAAGAGGAGGGGGGGCCAGAACTCATTTTAACGGGTT
CGGGTTCGGAGGTAGCGATTGCGGTCGAGGCAGCCAAGAAGCTGGTGGCG
GAGGGGGTTAGGGTGCGTGTGGTGAGTTTCCCTAGTTGGGAGCTGTTCGA
GCAGCAGGAGAAGGATTACAGGTTGGAAGTTTTCCCGGTGGGAGTGCCGG
TTGTGAGTGTTGAGGCATCTTCGATCCATGGCTGGGCGAAGTACTCGCAT
GCAGCTCTGGGCTTGACCTGGTTTGGGGCCTCGGGGCCTTATACAAAGGT
GTATGAGAAATTTGGGTTGACGGTCGAAAATCTGGCGGAGAAGGCGAAGG
AGGTGATGTCTTTCTATAAGGATGGGGGTAAGCCGGTACCGAGTTTGATT
GACGTGCCCGTGATTTCGGGTCACTATGAGCACAAACCGGTGGCCACCTC
ACAGGCATAA
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Synonyms
Publications