NO14G02040.1, NO14G02040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G02040.1
Unique NameNO14G02040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length432
Alignment locationchr14:622133..622564 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:622133..622564 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G02040.1 vs.
Match: XP_005855407.1 (trafficking protein particle complex subunit 4, partial [Nannochloropsis gaditana CCMP526]; XP_005855438.1 trafficking protein particle complex subunit 4, partial [Nannochloropsis gaditana CCMP526]; EKU20924.1 trafficking protein particle complex subunit 4, partial [Nannochloropsis gaditana CCMP526]; EKU20956.1 trafficking protein particle complex subunit 4, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 284.3 bits (726), Expect = 2.200e-73
Identity = 138/142 (97.18%), Postives = 140/142 (98.59%), Query Frame = 0 
Query:    1 MFLHLFIISRSGGLIYNKDLSVSAPRLTVNEWLVLGSTFHGLHSIAAQVAPLASSGIEKLECDNLKLQCFQSRTAVKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRCELFQQGVERLIERNSRELKKARSD 143
            MFLHLF+ISRSGGLIYNKDLS SAPRLTVNEWLVLGSTFHGLHSIAAQVAPLASSGIEKLECDNLKLQCFQSRT VKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRC+LFQQGVERLIERNSRELKKARSD
Sbjct:    4 MFLHLFVISRSGGLIYNKDLSSSAPRLTVNEWLVLGSTFHGLHSIAAQVAPLASSGIEKLECDNLKLQCFQSRTGVKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRCDLFQQGVERLIERNSRELKKARSD 145
The following BLAST results are available for this feature:
BLAST of NO14G02040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855407.12.200e-7397.18trafficking protein particle complex subunit 4, pa... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02040NO14G02040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G02040.1NO14G02040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G02040.1.cds1NO14G02040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G02040.1 ID=NO14G02040.1|Name=NO14G02040.1|organism=Nannochloropsis oceanica|type=mRNA|length=432bp
ATGTTCCTCCATCTCTTCATAATATCGCGGTCGGGCGGCCTGATCTACAA
TAAGGATCTGAGCGTCAGTGCGCCCCGCCTCACCGTGAACGAATGGCTCG
TCTTGGGGTCGACCTTCCACGGCCTGCACTCCATCGCGGCGCAAGTCGCG
CCCTTGGCCTCGTCAGGCATTGAGAAACTCGAGTGCGACAATCTGAAGCT
CCAGTGCTTTCAAAGTCGGACGGCTGTTAAGTTTGTCTTGACAGCCGAGC
CGGGCACGCCGGACTTGGACAATGTGCTGCATGGGATTTACGAGCTCTAC
GCGGATTACGTGCTGAAGAACCCCTTCTACGAAATGGACATGCCGATTCG
CTGCGAGTTGTTTCAACAGGGCGTGGAGCGGTTGATCGAGCGGAATTCCC
GGGAGCTGAAAAAGGCGCGCAGTGATGGGTGA
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protein sequence of NO14G02040.1

>NO14G02040.1-protein ID=NO14G02040.1-protein|Name=NO14G02040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=144bp
MFLHLFIISRSGGLIYNKDLSVSAPRLTVNEWLVLGSTFHGLHSIAAQVA
PLASSGIEKLECDNLKLQCFQSRTAVKFVLTAEPGTPDLDNVLHGIYELY
ADYVLKNPFYEMDMPIRCELFQQGVERLIERNSRELKKARSDG*
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mRNA from alignment at chr14:622133..622564-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G02040.1 ID=NO14G02040.1|Name=NO14G02040.1|organism=Nannochloropsis oceanica|type=mRNA|length=432bp|location=Sequence derived from alignment at chr14:622133..622564- (Nannochloropsis oceanica)
ATGTTCCTCCATCTCTTCATAATATCGCGGTCGGGCGGCCTGATCTACAA
TAAGGATCTGAGCGTCAGTGCGCCCCGCCTCACCGTGAACGAATGGCTCG
TCTTGGGGTCGACCTTCCACGGCCTGCACTCCATCGCGGCGCAAGTCGCG
CCCTTGGCCTCGTCAGGCATTGAGAAACTCGAGTGCGACAATCTGAAGCT
CCAGTGCTTTCAAAGTCGGACGGCTGTTAAGTTTGTCTTGACAGCCGAGC
CGGGCACGCCGGACTTGGACAATGTGCTGCATGGGATTTACGAGCTCTAC
GCGGATTACGTGCTGAAGAACCCCTTCTACGAAATGGACATGCCGATTCG
CTGCGAGTTGTTTCAACAGGGCGTGGAGCGGTTGATCGAGCGGAATTCCC
GGGAGCTGAAAAAGGCGCGCAGTGATGGGTGA
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Coding sequence (CDS) from alignment at chr14:622133..622564-

>NO14G02040.1 ID=NO14G02040.1|Name=NO14G02040.1|organism=Nannochloropsis oceanica|type=CDS|length=432bp|location=Sequence derived from alignment at chr14:622133..622564- (Nannochloropsis oceanica)
ATGTTCCTCCATCTCTTCATAATATCGCGGTCGGGCGGCCTGATCTACAA
TAAGGATCTGAGCGTCAGTGCGCCCCGCCTCACCGTGAACGAATGGCTCG
TCTTGGGGTCGACCTTCCACGGCCTGCACTCCATCGCGGCGCAAGTCGCG
CCCTTGGCCTCGTCAGGCATTGAGAAACTCGAGTGCGACAATCTGAAGCT
CCAGTGCTTTCAAAGTCGGACGGCTGTTAAGTTTGTCTTGACAGCCGAGC
CGGGCACGCCGGACTTGGACAATGTGCTGCATGGGATTTACGAGCTCTAC
GCGGATTACGTGCTGAAGAACCCCTTCTACGAAATGGACATGCCGATTCG
CTGCGAGTTGTTTCAACAGGGCGTGGAGCGGTTGATCGAGCGGAATTCCC
GGGAGCTGAAAAAGGCGCGCAGTGATGGGTGA
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Synonyms
Publications