NO14G02020.1, NO14G02020.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G02020.1
Unique NameNO14G02020.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2750
Alignment locationchr14:613395..616318 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:613395..616318 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G02020.1 vs.
Match: EWM24603.1 (mpn pad-1 domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 416.8 bits (1070), Expect = 6.700e-113
Identity = 223/348 (64.08%), Postives = 253/348 (72.70%), Query Frame = 0 
Query:    2 EDDLERRLCHLRGWDALSSKRLLSPLGRGKEGEVGHLLEDELHSPLSVASISGSMMLEPSAPPLFLDDGPPLPPVDADNSVKSGLSATELETAFNSLRLEEADDPASPRVRHYYPCLSSPVGGKKKEKEEEEEGEGKKGELMVSPFAVPGQEVWFRKRGMLRRMVLPSGLVGKFLEIADANSRKPPDGIETCGVLAGVQDGAGLMRCTTLIIPKQEGTSDTVGMTHEEELIGYCCS-----ADGKNLLQLGWIHTHPSQKCFMSSVDIHTHCGYQTMLPEAVAVVVALCNPQKPEVGVFRLTEPEGLQLIQRCELRGFHPHPLPDPQIYKNHHAVMWEDSAFAVVDLR 345
            ++DL RR   LRG  A S   + S  G+G          +E  +PLS        M EPSAPPLFLDDGP   P DA  +   GLSA EL+ AF SLR+ + DD  S +VR +YP L S        +  + +GE    E M SP  +PGQ  WF KRG LR ++LP+GLVGKFLEIAD NSRKPPDGIETCGVLAGV+DG GLMRCTTLIIPKQEGTSDTV MTHEEELI +CCS      +  NLLQLGWIHTHPSQ CFMSSVDIHTHCGYQTMLPEAVAVVVAL N ++P+VGVFRLTEPEGLQLIQRCELRGFHPHP+PDPQIYK+HH V+WE+S F+VVDLR
Sbjct:  165 DEDLTRRFQRLRGGGAPSYPGIDSSFGQGDTAS------EENEAPLSPVLT----MPEPSAPPLFLDDGP--APQDA--AENEGLSARELDAAFQSLRMADGDDEPS-QVRRFYPSLPS-------SRASQPKGE----ERMGSPL-IPGQANWFSKRGKLRPLMLPAGLVGKFLEIADKNSRKPPDGIETCGVLAGVRDGQGLMRCTTLIIPKQEGTSDTVSMTHEEELISFCCSGKHPMGEEGNLLQLGWIHTHPSQSCFMSSVDIHTHCGYQTMLPEAVAVVVALVNSRRPQVGVFRLTEPEGLQLIQRCELRGFHPHPIPDPQIYKSHHTVVWEESGFSVVDLR 485
The following BLAST results are available for this feature:
BLAST of NO14G02020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24603.16.700e-11364.08mpn pad-1 domain-containing protein [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02020NO14G02020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G02020.1NO14G02020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G02020.1.cds1NO14G02020.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02020.1.cds2NO14G02020.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G02020.1 ID=NO14G02020.1|Name=NO14G02020.1|organism=Nannochloropsis oceanica|type=mRNA|length=2750bp
TCCAGTACACATCGATTTTGCATTTCATTTCCTTTTTTGTCGTCATTCCG
TCCTATCCTCATTTCTTGCTTCCCCCTCTGCAGGCCGGTGAGGCCGGCAC
AGCGCCTTGCACCTTCTCCCACTCCGATGCCGTCTTAGCCACAATCGAAA
GGGCGTGTACCCCCGTGTCTAACTCCTCTTTGAGAATCCCATTGATCAGT
CGATGCCGGGCTAGCAAACCCTTGCCTTCGAACAAGGCCGAGATCGCCAC
CACCTTGAAATGTGTCTCCGAGCCCTTGGGCACGTTGTGACTGCTGCTTT
CGTTGATGATCTGCAAATGGGCGGGGGTCAAGGCGTCTTGGAGCTTGTCT
TGGATGGATTTTTGGACTGGCCCGCAAGGGATGGTCATGATGTTGGTGCT
GCTCCTACTGAGATGACGGAGAGCTGCAGCGGTCTGGGTTCTTGAGCTAT
GTCTTGCGAGGATCGCCGAGGTGCGGAATAACATGTAGGAGACAAGGCTA
GTATGAGTGCAGATGAGAAAGATGCTGTACTCCTGGGTGTGCTGCTTTCT
TTGGACTCTGTTGTGTGTTGAGTGTCGCGAATGTAGAGGAGTGAGGAGTG
GGGAGGTTGAATTCGTGCACAGAAGTGCCAGACAATGTCAGCATAGCCCC
CCAGGCGCCCATGCTTTGCCAATGAAAGCATTGAGGAATCAGTCTAGTAC
CTTAAGCTTCAGTCGGAATCGGGTATACGTAATTTGAGATCAGATAGACG
CAACGGCAGGAGGGAAGGCCGCCTCGCCGCCACTACATCACACCCTCACT
CCCTCCTTATCCACCTCATACACAGACACGGCTCCAATGCCCGTGGCGTC
GCCTGCTGGTGCAGTCGTGGAGGAGCTCTCCAAGCGCCATTTGAAGGAGC
TGGACAGGTGCGTAGAAAGAAGAGCAGTCACCTGCTGCCGCGAGTTGTAG
GAAGCATGATCAAACCCTCCCTCCTCCCTCCCTGACATAGGTATGTGGAG
GTTCCCAAGCTTCAAGACAGCACCCGTCTCAGTGTTTACTATGGGATGAG
CAAGCAGGTCCTGGCTCAGGCACAGCAATTCAGGGAATCGCGCGACATCG
ATCGGGTACGTCGCACTTCCCTTCTGGGAGGGAAGGAGGGGTTGGAAAGG
CATGCCTTCGGCCGACATCAAGCATAGGGAAGATAAATCCGTATCTGAAT
GAGGAATAATTTGATCGTAATGATGTCTGAAGGGAAAATTTTCCTTGCTT
TGGGATGATCAACTCTTTCAAACACACACCATCTTTTCTCCGTCCCTCTG
CCCTCCTACCACACCGCACGTACCCCAACAGGCCTACATTTTCTATAAGC
GCTTCCTCCGCCTCGCCCTCGATTGCATTCCCGAGCACATTGCCTACAAA
GAAGCCACTTTCGGCCGTGAAAAGAACTGGTTAGTAGGTGAGCGTCGACA
GGCGCTTAAGGCACTGGAAGAGGTCAATGGCGCGATCACAGCAGAAATCG
CCGAGCGCTGTTGTCGAGGTGTGGCTTCTCCTTCTTGCCCTCCCGTTGCA
TCAGCCGCTCCTCCATCATCACCAGGCCAAGCTATGGAAGATGACTTGGA
AAGGCGCCTGTGCCATTTAAGAGGATGGGATGCCTTGTCTAGCAAGCGAT
TGCTCAGTCCCCTGGGCCGAGGAAAGGAGGGAGAGGTTGGACACCTGCTC
GAGGACGAGCTACATTCACCGTTGTCAGTGGCAAGCATATCTGGGAGCAT
GATGCTCGAGCCGTCGGCGCCTCCTTTGTTTTTGGATGATGGCCCTCCTC
TTCCTCCGGTGGACGCCGACAACAGTGTGAAGAGCGGCTTGAGCGCCACT
GAGCTCGAAACCGCATTTAATTCCTTGCGGTTGGAGGAGGCGGATGACCC
TGCATCACCGAGAGTACGGCATTACTACCCTTGTCTTTCCTCGCCTGTGG
GGGGGAAGAAGAAGGAGAAAGAGGAGGAGGAGGAGGGGGAGGGGAAGAAG
GGGGAGTTGATGGTTTCTCCGTTTGCGGTCCCCGGGCAGGAGGTTTGGTT
TAGGAAGAGGGGGATGTTGAGGAGGATGGTGCTACCGAGTGGGCTGGTGG
GCAAGTTTCTAGAGATTGCCGATGCGAATAGTAGGAAGCCACCAGATGGC
ATCGAGACATGCGGTGTTCTCGCTGGGGTCCAAGACGGGGCAGGGCTCAT
GCGTTGCACCACTCTAATTATACCCAAGCAAGAGGGCACGTCGGACACCG
TCGGCATGACACACGAAGAGGAACTCATTGGGTACTGCTGTTCGGCAGAT
GGGAAGAATTTGCTGCAGCTTGGCTGGATCCATACGCACCCGAGTCAGAA
GTGCTTCATGTCTTCTGTCGACATCCACACGCATTGCGGCTATCAAACCA
TGTTGCCAGAAGCCGTCGCCGTGGTCGTCGCGCTGTGCAATCCTCAGAAG
CCAGAAGTGGGCGTCTTCCGCCTGACCGAACCCGAGGGCTTGCAGCTTAT
TCAGAGGTGCGAACTACGCGGTTTCCACCCTCATCCTCTGCCCGACCCCC
AAATCTACAAGAACCACCACGCGGTCATGTGGGAAGACTCAGCGTTTGCC
GTCGTGGACTTGAGATGATGCGATCTTACAATAAGGAGGAAGGAAAATTC
AACGAAATGGATGTACACGTAATTAAGCAAGCATGAGAAGAAACATAAAG
TTTACCTGAAGAAGCTCGAAGCTCGGATCTAATGTATACCGAGAGCTTGC
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protein sequence of NO14G02020.1

>NO14G02020.1-protein ID=NO14G02020.1-protein|Name=NO14G02020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=345bp
MEDDLERRLCHLRGWDALSSKRLLSPLGRGKEGEVGHLLEDELHSPLSVA
SISGSMMLEPSAPPLFLDDGPPLPPVDADNSVKSGLSATELETAFNSLRL
EEADDPASPRVRHYYPCLSSPVGGKKKEKEEEEEGEGKKGELMVSPFAVP
GQEVWFRKRGMLRRMVLPSGLVGKFLEIADANSRKPPDGIETCGVLAGVQ
DGAGLMRCTTLIIPKQEGTSDTVGMTHEEELIGYCCSADGKNLLQLGWIH
THPSQKCFMSSVDIHTHCGYQTMLPEAVAVVVALCNPQKPEVGVFRLTEP
EGLQLIQRCELRGFHPHPLPDPQIYKNHHAVMWEDSAFAVVDLR*
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mRNA from alignment at chr14:613395..616318+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G02020.1 ID=NO14G02020.1|Name=NO14G02020.1|organism=Nannochloropsis oceanica|type=mRNA|length=2924bp|location=Sequence derived from alignment at chr14:613395..616318+ (Nannochloropsis oceanica)
TCCAGTACACATCGATTTTGCATTTCATTTCCTTTTTTGTCGTCATTCCG
TCCTATCCTCATTTCTTGCTTCCCCCTCTGCAGGCCGGTGAGGCCGGCAC
AGCGCCTTGCACCTTCTCCCACTCCGATGCCGTCTTAGCCACAATCGAAA
GGGCGTGTACCCCCGTGTCTAACTCCTCTTTGAGAATCCCATTGATCAGT
CGATGCCGGGCTAGCAAACCCTTGCCTTCGAACAAGGCCGAGATCGCCAC
CACCTTGAAATGTGTCTCCGAGCCCTTGGGCACGTTGTGACTGCTGCTTT
CGTTGATGATCTGCAAATGGGCGGGGGTCAAGGCGTCTTGGAGCTTGTCT
TGGATGGATTTTTGGACTGGCCCGCAAGGGATGGTCATGATGTTGGTGCT
GCTCCTACTGAGATGACGGAGAGCTGCAGCGGTCTGGGTTCTTGAGCTAT
GTCTTGCGAGGATCGCCGAGGTGCGGAATAACATGTAGGAGACAAGGCTA
GTATGAGTGCAGATGAGAAAGATGCTGTACTCCTGGGTGTGCTGCTTTCT
TTGGACTCTGTTGTGTGTTGAGTGTCGCGAATGTAGAGGAGTGAGGAGTG
GGGAGGTTGAATTCGTGCACAGAAGTGCCAGACAATGTCAGCATAGCCCC
CCAGGCGCCCATGCTTTGCCAATGAAAGCATTGAGGAATCAGTCTAGTAC
CTTAAGCTTCAGTCGGAATCGGGTATACGTAATTTGAGATCAGATAGACG
CAACGGCAGGAGGGAAGGCCGCCTCGCCGCCACTACATCACACCCTCACT
CCCTCCTTATCCACCTCATACACAGACACGGCTCCAATGCCCGTGGCGTC
GCCTGCTGGTGCAGTCGTGGAGGAGCTCTCCAAGCGCCATTTGAAGGAGC
TGGACAGGTGCGTAGAAAGAAGAGCAGTCACCTGCTGCCGCGAGTTGTAG
GAAGCATGATCAAACCCTCCCTCCTCCCTCCCTGACATAGGTATGTGGAG
GTTCCCAAGCTTCAAGACAGCACCCGTCTCAGTGTTTACTATGGGATGAG
CAAGCAGGTCCTGGCTCAGGCACAGCAATTCAGGGAATCGCGCGACATCG
ATCGGGTACGTCGCACTTCCCTTCTGGGAGGGAAGGAGGGGTTGGAAAGG
CATGCCTTCGGCCGACATCAAGCATAGGGAAGATAAATCCGTATCTGAAT
GAGGAATAATTTGATCGTAATGATGTCTGAAGGGAAAATTTTCCTTGCTT
TGGGATGATCAACTCTTTCAAACACACACCATCTTTTCTCCGTCCCTCTG
CCCTCCTACCACACCGCACGTACCCCAACAGGCCTACATTTTCTATAAGC
GCTTCCTCCGCCTCGCCCTCGATTGCATTCCCGAGCACATTGCCTACAAA
GAAGCCACTTTCGGCCGTGAAAAGAACTGGTTAGTAGGTGAGCGTCGACA
GGCGCTTAAGGCACTGGAAGAGGTCAATGGCGCGATCACAGCAGAAATCG
CCGAGCGCTGTTGTCGAGGTGTGGCTTCTCCTTCTTGCCCTCCCGTTGCA
TCAGCCGCTCCTCCATCATCACCAGGCCAAGCTATGGAAGATGACTTGGA
AAGGCGCCTGTGCCATTTAAGAGGATGGGATGCCTTGTCTAGCAAGCGAT
TGCTCAGTCCCCTGGGCCGAGGAAAGGAGGGAGAGGTTGGACACCTGCTC
GAGGACGAGCTACATTCACCGTTGTCAGTGGCAAGCATATCTGGGAGCAT
GATGCTCGAGCCGTCGGCGCCTCCTTTGTTTTTGGATGATGGCCCTCCTC
TTCCTCCGGTGGACGCCGACAACAGTGTGAAGAGCGGCTTGAGCGCCACT
GAGCTCGAAACCGCATTTAATTCCTTGCGGTTGGAGGAGGCGGATGACCC
TGCATCACCGAGAGTACGGCATTACTACCCTTGTCTTTCCTCGCCTGTGG
GGGGGAAGAAGAAGGAGAAAGAGGAGGAGGAGGAGGGGGAGGGGAAGAAG
GGGGAGTTGATGGTTTCTCCGTTTGCGGTCCCCGGGCAGGAGGTTTGGTT
TAGGAAGAGGGGGATGTTGAGGAGGATGGTGCTACCGAGTGGGCTGGTGG
GCAAGTTTCTAGAGATTGCCGATGCGAATAGTAGGAAGGTGCGTGCTTCG
GTGCTGGTGGGATGAGAGGAGGAGTGATGACAGGGGTGGTTGGATGTATG
CTTGTCATACTCCGTTTTCTCGTCGTTTCCCTCGGATTATTCTATGGGGC
CTCAATGAAGATCATATTAACCCTGATGTCATTCCTTCTCTCATCTACTC
TCCTTCTCGTAGCCACCAGATGGCATCGAGACATGCGGTGTTCTCGCTGG
GGTCCAAGACGGGGCAGGGCTCATGCGTTGCACCACTCTAATTATACCCA
AGCAAGAGGGCACGTCGGACACCGTCGGCATGACACACGAAGAGGAACTC
ATTGGGTACTGCTGTTCGGCAGATGGGAAGAATTTGCTGCAGCTTGGCTG
GATCCATACGCACCCGAGTCAGAAGTGCTTCATGTCTTCTGTCGACATCC
ACACGCATTGCGGCTATCAAACCATGTTGCCAGAAGCCGTCGCCGTGGTC
GTCGCGCTGTGCAATCCTCAGAAGCCAGAAGTGGGCGTCTTCCGCCTGAC
CGAACCCGAGGGCTTGCAGCTTATTCAGAGGTGCGAACTACGCGGTTTCC
ACCCTCATCCTCTGCCCGACCCCCAAATCTACAAGAACCACCACGCGGTC
ATGTGGGAAGACTCAGCGTTTGCCGTCGTGGACTTGAGATGATGCGATCT
TACAATAAGGAGGAAGGAAAATTCAACGAAATGGATGTACACGTAATTAA
GCAAGCATGAGAAGAAACATAAAGTTTACCTGAAGAAGCTCGAAGCTCGG
ATCTAATGTATACCGAGAGCTTGC
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Coding sequence (CDS) from alignment at chr14:613395..616318+

>NO14G02020.1 ID=NO14G02020.1|Name=NO14G02020.1|organism=Nannochloropsis oceanica|type=CDS|length=1035bp|location=Sequence derived from alignment at chr14:613395..616318+ (Nannochloropsis oceanica)
ATGGAAGATGACTTGGAAAGGCGCCTGTGCCATTTAAGAGGATGGGATGC
CTTGTCTAGCAAGCGATTGCTCAGTCCCCTGGGCCGAGGAAAGGAGGGAG
AGGTTGGACACCTGCTCGAGGACGAGCTACATTCACCGTTGTCAGTGGCA
AGCATATCTGGGAGCATGATGCTCGAGCCGTCGGCGCCTCCTTTGTTTTT
GGATGATGGCCCTCCTCTTCCTCCGGTGGACGCCGACAACAGTGTGAAGA
GCGGCTTGAGCGCCACTGAGCTCGAAACCGCATTTAATTCCTTGCGGTTG
GAGGAGGCGGATGACCCTGCATCACCGAGAGTACGGCATTACTACCCTTG
TCTTTCCTCGCCTGTGGGGGGGAAGAAGAAGGAGAAAGAGGAGGAGGAGG
AGGGGGAGGGGAAGAAGGGGGAGTTGATGGTTTCTCCGTTTGCGGTCCCC
GGGCAGGAGGTTTGGTTTAGGAAGAGGGGGATGTTGAGGAGGATGGTGCT
ACCGAGTGGGCTGGTGGGCAAGTTTCTAGAGATTGCCGATGCGAATAGTA
GGAAGCCACCAGATGGCATCGAGACATGCGGTGTTCTCGCTGGGGTCCAA
GACGGGGCAGGGCTCATGCGTTGCACCACTCTAATTATACCCAAGCAAGA
GGGCACGTCGGACACCGTCGGCATGACACACGAAGAGGAACTCATTGGGT
ACTGCTGTTCGGCAGATGGGAAGAATTTGCTGCAGCTTGGCTGGATCCAT
ACGCACCCGAGTCAGAAGTGCTTCATGTCTTCTGTCGACATCCACACGCA
TTGCGGCTATCAAACCATGTTGCCAGAAGCCGTCGCCGTGGTCGTCGCGC
TGTGCAATCCTCAGAAGCCAGAAGTGGGCGTCTTCCGCCTGACCGAACCC
GAGGGCTTGCAGCTTATTCAGAGGTGCGAACTACGCGGTTTCCACCCTCA
TCCTCTGCCCGACCCCCAAATCTACAAGAACCACCACGCGGTCATGTGGG
AAGACTCAGCGTTTGCCGTCGTGGACTTGAGATGA
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Synonyms
Publications