NO14G01930.1, NO14G01930.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G01930.1
Unique NameNO14G01930.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1026
Alignment locationchr14:592933..593958 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:592933..593958 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G01930.1 vs.
Match: EWM24621.1 (Peptidyl-prolyl cis-trans isomerase, FKBP-type [Nannochloropsis gaditana])

HSP 1 Score: 439.5 bits (1129), Expect = 9.500e-120
Identity = 221/296 (74.66%), Postives = 247/296 (83.45%), Query Frame = 0 
Query:    9 GLLLLLLNASQAFLVVPGGRISSTPSSLSFKRGRTALMSIKDEVGSKKQGSLPSMPFVSAPLGGTPPAPPMGLGRRKPDPGKSTSYFDLEDETAPTTPRQLEGDLLRDGGVLKTIVREGGGPLVTPGAEVAVKYEGRTADGQVLCRGEDFRFLQGDGTMIGGFETAVGSMRVGEVAKVTVQPWYAYGSTGVSPVVGPDTPLEFDIEVLEASGNFLNPRSFRDVDPKKLRDSKSIAQDYAQRSELRMRNEEGMTGTEKSLKWFKSLYFFGFFEGETGEKAPWYLTPTITFPIMFVTC 305
            G LL    AS+AFL++P  R+SS  S+ + +      MS KDEV +    S  S P  SAPLGG PPAPP  +GRR+PDP K  SYFD EDETAP+ P+QLEGDLLRDGGV+KTI+  G GPLVTPGAEVAVKYEGRTADGQVLCRGEDFRFLQGDGTMIGGFETAVGSMRVGEVA+V +QPWYAYGS GVSPVVGPD PL+FDIEVLEASGNFLNP+SFRDVDPKKLRD+KSIA+DYAQRSELRMRNEEG++  EK+ +WFKSLYFFGFFEGETGE+ PWYLTPTITFPI+   C
Sbjct:   11 GALLTSFGASRAFLIIPRSRLSS--STFARRCNIAIRMSTKDEVDTT---SKSSTPLPSAPLGGMPPAPPASVGRRRPDPEKGASYFDFEDETAPSVPQQLEGDLLRDGGVMKTIITAGEGPLVTPGAEVAVKYEGRTADGQVLCRGEDFRFLQGDGTMIGGFETAVGSMRVGEVARVQIQPWYAYGSAGVSPVVGPDMPLDFDIEVLEASGNFLNPKSFRDVDPKKLRDAKSIARDYAQRSELRMRNEEGLSNAEKASRWFKSLYFFGFFEGETGERPPWYLTPTITFPIIETWC 301
The following BLAST results are available for this feature:
BLAST of NO14G01930.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24621.19.500e-12074.66Peptidyl-prolyl cis-trans isomerase, FKBP-type [Na... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G01930NO14G01930Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G01930.1NO14G01930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G01930.1.cds1NO14G01930.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G01930.1 ID=NO14G01930.1|Name=NO14G01930.1|organism=Nannochloropsis oceanica|type=mRNA|length=1026bp
ATGGCGAGCATTGTAAGAAAAGCGGGCCTGCTGCTGCTCCTCCTGAACGC
AAGCCAAGCATTTCTCGTCGTGCCCGGCGGCCGCATCAGCAGCACTCCAA
GCAGCCTTTCCTTCAAGCGCGGTCGTACCGCTTTGATGAGTATTAAAGAT
GAGGTGGGCTCCAAGAAGCAAGGCAGCTTGCCCAGCATGCCCTTTGTATC
GGCCCCGTTGGGAGGCACGCCGCCCGCGCCACCCATGGGCTTGGGACGAC
GGAAGCCGGACCCGGGAAAGAGCACTTCGTACTTCGACTTGGAGGACGAA
ACTGCACCTACTACGCCACGGCAGTTGGAGGGCGACTTGCTGCGAGATGG
AGGAGTACTCAAGACAATTGTTAGAGAGGGGGGCGGGCCTTTGGTGACGC
CCGGTGCGGAGGTGGCAGTCAAGTATGAAGGCCGCACGGCGGACGGGCAG
GTGTTGTGTCGGGGGGAAGACTTTCGTTTCTTGCAAGGGGACGGGACCAT
GATTGGTGGGTTTGAGACGGCTGTGGGCTCCATGCGTGTGGGAGAGGTGG
CGAAAGTGACGGTGCAGCCGTGGTATGCCTACGGGAGCACGGGAGTGAGT
CCTGTAGTGGGACCGGACACGCCGTTGGAGTTTGACATTGAAGTGTTGGA
GGCGTCGGGTAACTTTTTGAACCCAAGGTCTTTCCGGGACGTGGATCCGA
AAAAGCTGCGTGATTCTAAGTCGATCGCCCAGGATTATGCGCAGCGGTCT
GAGTTACGGATGCGGAATGAGGAGGGAATGACGGGGACGGAGAAGTCGTT
GAAGTGGTTTAAGTCTCTGTATTTCTTCGGATTCTTCGAGGGAGAGACGG
GCGAGAAGGCTCCCTGGTACTTGACGCCCACCATTACTTTTCCTATCATG
TTCGTCACGTGCGCTGCGGCGTTTTATGTGCTCATTTCGTTCGGCGGAGT
TTCGATCAAGCGGGATTTGGTTTTGGAGGATAGTATTGATTTGGGCTTTG
CCTGGCTTGATCGTATCATGGCATAG
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protein sequence of NO14G01930.1

>NO14G01930.1-protein ID=NO14G01930.1-protein|Name=NO14G01930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MASIVRKAGLLLLLLNASQAFLVVPGGRISSTPSSLSFKRGRTALMSIKD
EVGSKKQGSLPSMPFVSAPLGGTPPAPPMGLGRRKPDPGKSTSYFDLEDE
TAPTTPRQLEGDLLRDGGVLKTIVREGGGPLVTPGAEVAVKYEGRTADGQ
VLCRGEDFRFLQGDGTMIGGFETAVGSMRVGEVAKVTVQPWYAYGSTGVS
PVVGPDTPLEFDIEVLEASGNFLNPRSFRDVDPKKLRDSKSIAQDYAQRS
ELRMRNEEGMTGTEKSLKWFKSLYFFGFFEGETGEKAPWYLTPTITFPIM
FVTCAAAFYVLISFGGVSIKRDLVLEDSIDLGFAWLDRIMA*
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mRNA from alignment at chr14:592933..593958+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G01930.1 ID=NO14G01930.1|Name=NO14G01930.1|organism=Nannochloropsis oceanica|type=mRNA|length=1026bp|location=Sequence derived from alignment at chr14:592933..593958+ (Nannochloropsis oceanica)
ATGGCGAGCATTGTAAGAAAAGCGGGCCTGCTGCTGCTCCTCCTGAACGC
AAGCCAAGCATTTCTCGTCGTGCCCGGCGGCCGCATCAGCAGCACTCCAA
GCAGCCTTTCCTTCAAGCGCGGTCGTACCGCTTTGATGAGTATTAAAGAT
GAGGTGGGCTCCAAGAAGCAAGGCAGCTTGCCCAGCATGCCCTTTGTATC
GGCCCCGTTGGGAGGCACGCCGCCCGCGCCACCCATGGGCTTGGGACGAC
GGAAGCCGGACCCGGGAAAGAGCACTTCGTACTTCGACTTGGAGGACGAA
ACTGCACCTACTACGCCACGGCAGTTGGAGGGCGACTTGCTGCGAGATGG
AGGAGTACTCAAGACAATTGTTAGAGAGGGGGGCGGGCCTTTGGTGACGC
CCGGTGCGGAGGTGGCAGTCAAGTATGAAGGCCGCACGGCGGACGGGCAG
GTGTTGTGTCGGGGGGAAGACTTTCGTTTCTTGCAAGGGGACGGGACCAT
GATTGGTGGGTTTGAGACGGCTGTGGGCTCCATGCGTGTGGGAGAGGTGG
CGAAAGTGACGGTGCAGCCGTGGTATGCCTACGGGAGCACGGGAGTGAGT
CCTGTAGTGGGACCGGACACGCCGTTGGAGTTTGACATTGAAGTGTTGGA
GGCGTCGGGTAACTTTTTGAACCCAAGGTCTTTCCGGGACGTGGATCCGA
AAAAGCTGCGTGATTCTAAGTCGATCGCCCAGGATTATGCGCAGCGGTCT
GAGTTACGGATGCGGAATGAGGAGGGAATGACGGGGACGGAGAAGTCGTT
GAAGTGGTTTAAGTCTCTGTATTTCTTCGGATTCTTCGAGGGAGAGACGG
GCGAGAAGGCTCCCTGGTACTTGACGCCCACCATTACTTTTCCTATCATG
TTCGTCACGTGCGCTGCGGCGTTTTATGTGCTCATTTCGTTCGGCGGAGT
TTCGATCAAGCGGGATTTGGTTTTGGAGGATAGTATTGATTTGGGCTTTG
CCTGGCTTGATCGTATCATGGCATAG
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Coding sequence (CDS) from alignment at chr14:592933..593958+

>NO14G01930.1 ID=NO14G01930.1|Name=NO14G01930.1|organism=Nannochloropsis oceanica|type=CDS|length=1026bp|location=Sequence derived from alignment at chr14:592933..593958+ (Nannochloropsis oceanica)
ATGGCGAGCATTGTAAGAAAAGCGGGCCTGCTGCTGCTCCTCCTGAACGC
AAGCCAAGCATTTCTCGTCGTGCCCGGCGGCCGCATCAGCAGCACTCCAA
GCAGCCTTTCCTTCAAGCGCGGTCGTACCGCTTTGATGAGTATTAAAGAT
GAGGTGGGCTCCAAGAAGCAAGGCAGCTTGCCCAGCATGCCCTTTGTATC
GGCCCCGTTGGGAGGCACGCCGCCCGCGCCACCCATGGGCTTGGGACGAC
GGAAGCCGGACCCGGGAAAGAGCACTTCGTACTTCGACTTGGAGGACGAA
ACTGCACCTACTACGCCACGGCAGTTGGAGGGCGACTTGCTGCGAGATGG
AGGAGTACTCAAGACAATTGTTAGAGAGGGGGGCGGGCCTTTGGTGACGC
CCGGTGCGGAGGTGGCAGTCAAGTATGAAGGCCGCACGGCGGACGGGCAG
GTGTTGTGTCGGGGGGAAGACTTTCGTTTCTTGCAAGGGGACGGGACCAT
GATTGGTGGGTTTGAGACGGCTGTGGGCTCCATGCGTGTGGGAGAGGTGG
CGAAAGTGACGGTGCAGCCGTGGTATGCCTACGGGAGCACGGGAGTGAGT
CCTGTAGTGGGACCGGACACGCCGTTGGAGTTTGACATTGAAGTGTTGGA
GGCGTCGGGTAACTTTTTGAACCCAAGGTCTTTCCGGGACGTGGATCCGA
AAAAGCTGCGTGATTCTAAGTCGATCGCCCAGGATTATGCGCAGCGGTCT
GAGTTACGGATGCGGAATGAGGAGGGAATGACGGGGACGGAGAAGTCGTT
GAAGTGGTTTAAGTCTCTGTATTTCTTCGGATTCTTCGAGGGAGAGACGG
GCGAGAAGGCTCCCTGGTACTTGACGCCCACCATTACTTTTCCTATCATG
TTCGTCACGTGCGCTGCGGCGTTTTATGTGCTCATTTCGTTCGGCGGAGT
TTCGATCAAGCGGGATTTGGTTTTGGAGGATAGTATTGATTTGGGCTTTG
CCTGGCTTGATCGTATCATGGCATAG
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Synonyms
Publications